RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 UNC79Q9P2D8 2635 aa10.41□□□□□ -0.74
CLN3-253ENST00000636977 FAM240AA0A1B0GVK7 77 aa10.41□□□□□ -0.74
CLN3-253ENST00000636977 SPATA3Q8NHX4 192 aa10.41□□□□□ -0.74
CLN3-253ENST00000636977 DPH3Q96FX2 82 aa10.41□□□□□ -0.74
CLN3-253ENST00000636977 LINC00337Q8N6G1 96 aa10.4□□□□□ -0.74
CLN3-253ENST00000636977 C1orf43Q9BWL3 253 aa10.4□□□□□ -0.74
CLN3-253ENST00000636977 C11orf68Q9H3H3 251 aaKnown RBP10.4□□□□□ -0.74
CLN3-253ENST00000636977 A0A096LPF7 62 aa10.4□□□□□ -0.75
CLN3-253ENST00000636977 IGKV2-28A0A075B6P5 120 aa10.39□□□□□ -0.75
CLN3-253ENST00000636977 IGHV3OR16-9A0A0B4J2B5 98 aa10.39□□□□□ -0.75
CLN3-253ENST00000636977 IGKV2D-28P01615 120 aa10.39□□□□□ -0.75
CLN3-253ENST00000636977 CMC4P56277 68 aaPredicted RBP10.39□□□□□ -0.75
CLN3-253ENST00000636977 PKIGQ9Y2B9 76 aa10.39□□□□□ -0.75
CLN3-253ENST00000636977 HIVEP2P31629 2446 aa10.38□□□□□ -0.75
CLN3-253ENST00000636977 LINC00158P58513 81 aa10.38□□□□□ -0.75
CLN3-253ENST00000636977 CLPSL2Q6UWE3 100 aa10.38□□□□□ -0.75
CLN3-253ENST00000636977 SDIM1Q6ZPB5 146 aa10.38□□□□□ -0.75
CLN3-253ENST00000636977 LINC00643Q86TS7 51 aa10.38□□□□□ -0.75
CLN3-253ENST00000636977 Q9HAA7 133 aa10.38□□□□□ -0.75
CLN3-253ENST00000636977 PFN2P35080 140 aa10.38□□□□□ -0.75
CLN3-253ENST00000636977 IMUPQ9GZP8 106 aa10.38□□□□□ -0.75
CLN3-253ENST00000636977 C22orf24Q9Y442 160 aa10.38□□□□□ -0.75
CLN3-253ENST00000636977 DEFB121Q5J5C9 76 aa10.37□□□□□ -0.75
CLN3-253ENST00000636977 C2orf48Q96LS8 159 aa10.37□□□□□ -0.75
CLN3-253ENST00000636977 SND1-IT1Q9HBX3 110 aa10.37□□□□□ -0.75
CLN3-253ENST00000636977 RPS28P62857 69 aaKnown RBP10.36□□□□□ -0.75
CLN3-253ENST00000636977 IGKV3D-7A0A0C4DH55 119 aa10.36□□□□□ -0.75
CLN3-253ENST00000636977 CRYGAP11844 174 aa10.36□□□□□ -0.75
CLN3-253ENST00000636977 GYPEP15421 78 aa10.36□□□□□ -0.75
CLN3-253ENST00000636977 HILS1P60008 231 aa10.36□□□□□ -0.75
CLN3-253ENST00000636977 NOTCH2Q04721 2471 aa10.35□□□□□ -0.75
CLN3-253ENST00000636977 COPS9Q8WXC6 57 aa10.35□□□□□ -0.75
CLN3-253ENST00000636977 DEFB4AO15263 64 aa10.35□□□□□ -0.75
CLN3-253ENST00000636977 CCL18P55774 89 aa10.35□□□□□ -0.75
CLN3-253ENST00000636977 LINC00482Q8N8I6 264 aa10.35□□□□□ -0.75
CLN3-253ENST00000636977 A0A087WVE0 104 aa10.35□□□□□ -0.75
CLN3-253ENST00000636977 LINC00959A0A1B0GUT2 108 aa10.35□□□□□ -0.75
CLN3-253ENST00000636977 BAALC-AS2P0C853 105 aa10.35□□□□□ -0.75
CLN3-253ENST00000636977 XCL1P47992 114 aa10.35□□□□□ -0.75
CLN3-253ENST00000636977 Q5XG85 94 aa10.35□□□□□ -0.75
CLN3-253ENST00000636977 TENM1Q9UKZ4 2725 aa10.34□□□□□ -0.75
CLN3-253ENST00000636977 A0A087WZ39 114 aa10.34□□□□□ -0.75
CLN3-253ENST00000636977 CRPP02741 224 aa10.33□□□□□ -0.76
CLN3-253ENST00000636977 Q8N3U1 123 aa10.33□□□□□ -0.76
CLN3-253ENST00000636977 PF4P02776 101 aa10.33□□□□□ -0.76
CLN3-253ENST00000636977 SMIM11BQ8TCY0 68 aa10.33□□□□□ -0.76
CLN3-253ENST00000636977 X6R8D5 127 aa10.33□□□□□ -0.76
CLN3-253ENST00000636977 ATOX1O00244 68 aa10.32□□□□□ -0.76
CLN3-253ENST00000636977 HECTD1Q9ULT8 2610 aa10.32□□□□□ -0.76
CLN3-253ENST00000636977 A0A087WYN8 130 aa10.32□□□□□ -0.76
CLN3-253ENST00000636977 OTOGQ6ZRI0 2925 aa10.32□□□□□ -0.76
CLN3-253ENST00000636977 TRAV13-2A0A0B4J235 113 aa10.31□□□□□ -0.76
CLN3-253ENST00000636977 ACYP1P07311 99 aa10.31□□□□□ -0.76
CLN3-253ENST00000636977 RPL28P46779 137 aaKnown RBP10.31□□□□□ -0.76
CLN3-253ENST00000636977 TMEM258P61165 79 aa10.31□□□□□ -0.76
CLN3-253ENST00000636977 C9orf129Q5T035 196 aaKnown RBP10.31□□□□□ -0.76
CLN3-253ENST00000636977 ATP5G1P05496 136 aa10.3□□□□□ -0.76
CLN3-253ENST00000636977 C6orf226Q5I0X4 101 aa10.29□□□□□ -0.76
CLN3-253ENST00000636977 LINC00612Q8N6U2 182 aa10.29□□□□□ -0.76
CLN3-253ENST00000636977 FAM222AQ5U5X8 452 aa10.29□□□□□ -0.76
CLN3-253ENST00000636977 MRAPQ8TCY5 172 aa10.29□□□□□ -0.76
CLN3-253ENST00000636977 PAX4O43316 350 aa10.29□□□□□ -0.76
CLN3-253ENST00000636977 LINC00336Q6ZUF6 198 aa10.28□□□□□ -0.76
CLN3-253ENST00000636977 IBA57-AS1B1ANH7 110 aa10.28□□□□□ -0.76
CLN3-253ENST00000636977 PRR3P79522 188 aaKnown RBP10.28□□□□□ -0.76
CLN3-253ENST00000636977 RPL18AQ02543 176 aaKnown RBP10.27□□□□□ -0.77
CLN3-253ENST00000636977 DEFB135Q30KP9 77 aa10.27□□□□□ -0.77
CLN3-253ENST00000636977 IGLV10-54A0A075B6I4 117 aa10.26□□□□□ -0.77
CLN3-253ENST00000636977 TRRAPQ9Y4A5 3859 aa10.26□□□□□ -0.77
CLN3-253ENST00000636977 MALP21145 153 aa10.26□□□□□ -0.77
CLN3-253ENST00000636977 PRO0255Q9UI72 69 aa10.26□□□□□ -0.77
CLN3-253ENST00000636977 SLPIP03973 132 aa10.25□□□□□ -0.77
CLN3-253ENST00000636977 LINC00269Q8N2A0 174 aa10.25□□□□□ -0.77
CLN3-253ENST00000636977 SS18Q15532 418 aa10.24□□□□□ -0.77
CLN3-253ENST00000636977 HIST1H4AP62805 103 aaKnown RBP10.24□□□□□ -0.77
CLN3-253ENST00000636977 SERP2Q8N6R1 65 aa10.24□□□□□ -0.77
CLN3-253ENST00000636977 A0A0U1RQV1 116 aa10.23□□□□□ -0.77
CLN3-253ENST00000636977 LY6G6DO95868 133 aa10.23□□□□□ -0.77
CLN3-253ENST00000636977 CXCL5P42830 114 aa10.23□□□□□ -0.77
CLN3-253ENST00000636977 A0A1B0GUV1 79 aa10.23□□□□□ -0.77
CLN3-253ENST00000636977 LECT2O14960 151 aa10.23□□□□□ -0.77
CLN3-253ENST00000636977 C9orf116Q5BN46 136 aaPredicted RBP10.23□□□□□ -0.77
CLN3-253ENST00000636977 J3QKU1 62 aa10.22□□□□□ -0.77
CLN3-253ENST00000636977 ATRQ13535 2644 aa10.22□□□□□ -0.77
CLN3-253ENST00000636977 CELA1Q9UNI1 258 aa10.22□□□□□ -0.77
CLN3-253ENST00000636977 DNAL4O96015 105 aa10.21□□□□□ -0.77
CLN3-253ENST00000636977 USP17L23D6RBM5 183 aa10.21□□□□□ -0.78
CLN3-253ENST00000636977 C14orf132Q9NPU4 83 aa10.21□□□□□ -0.78
CLN3-253ENST00000636977 Q8IZM0 81 aa10.2□□□□□ -0.78
CLN3-253ENST00000636977 PRO0628Q9UI54 55 aa10.2□□□□□ -0.78
CLN3-253ENST00000636977 IGHV4-28A0A0C4DH34 117 aa10.2□□□□□ -0.78
CLN3-253ENST00000636977 ANGP03950 147 aaKnown RBP10.2□□□□□ -0.78
CLN3-253ENST00000636977 KIAA0087Q14695 138 aa10.2□□□□□ -0.78
CLN3-253ENST00000636977 UPK3BQ9BT76 320 aa10.2□□□□□ -0.78
CLN3-253ENST00000636977 NSD1Q96L73 2696 aaPredicted RBP10.2□□□□□ -0.78
CLN3-253ENST00000636977 FAM236DA0A1B0GTK5 79 aa10.19□□□□□ -0.78
CLN3-253ENST00000636977 FAM236CP0DP71 79 aa10.19□□□□□ -0.78
CLN3-253ENST00000636977 Q8NDZ9 215 aa10.19□□□□□ -0.78
CLN3-253ENST00000636977 CHCHD10Q8WYQ3 142 aaPredicted RBP10.19□□□□□ -0.78
CLN3-253ENST00000636977 KMT2BQ9UMN6 2715 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms