RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 ERG28Q9UKR5 140 aa13.46□□□□□ -0.25
CHRNA4-209ENST00000627000 NOTCH1P46531 2555 aa13.45□□□□□ -0.26
CHRNA4-209ENST00000627000 C11orf68Q9H3H3 251 aaKnown RBP13.45□□□□□ -0.26
CHRNA4-209ENST00000627000 IGLV10-54A0A075B6I4 117 aa13.45□□□□□ -0.26
CHRNA4-209ENST00000627000 SMCPP49901 116 aaPredicted RBP13.45□□□□□ -0.26
CHRNA4-209ENST00000627000 REG3AQ06141 175 aa13.44□□□□□ -0.26
CHRNA4-209ENST00000627000 LYPD5Q6UWN5 251 aa13.44□□□□□ -0.26
CHRNA4-209ENST00000627000 CDIP1Q9H305 208 aa13.42□□□□□ -0.26
CHRNA4-209ENST00000627000 M0QXV9 152 aa13.42□□□□□ -0.26
CHRNA4-209ENST00000627000 TCL1BO95988 128 aa13.42□□□□□ -0.26
CHRNA4-209ENST00000627000 NANOS2P60321 138 aaKnown RBP13.42□□□□□ -0.26
CHRNA4-209ENST00000627000 Q1RN00 199 aa13.42□□□□□ -0.26
CHRNA4-209ENST00000627000 KPRPQ5T749 579 aaPredicted RBP13.42□□□□□ -0.26
CHRNA4-209ENST00000627000 CHCHD10Q8WYQ3 142 aaPredicted RBP13.42□□□□□ -0.26
CHRNA4-209ENST00000627000 SCGB1C2P0DMR2 95 aa13.41□□□□□ -0.26
CHRNA4-209ENST00000627000 CD164L2Q6UWJ8 174 aa13.39□□□□□ -0.27
CHRNA4-209ENST00000627000 C6orf226Q5I0X4 101 aa13.38□□□□□ -0.27
CHRNA4-209ENST00000627000 MIR7-3HGQ8N6C7 128 aa13.38□□□□□ -0.27
CHRNA4-209ENST00000627000 KLK12Q9UKR0 248 aa13.38□□□□□ -0.27
CHRNA4-209ENST00000627000 H3BNG1 76 aa13.37□□□□□ -0.27
CHRNA4-209ENST00000627000 K7EIL1 84 aa13.37□□□□□ -0.27
CHRNA4-209ENST00000627000 TRIAP1O43715 76 aa13.37□□□□□ -0.27
CHRNA4-209ENST00000627000 C11orf45Q8TAV5 145 aa13.37□□□□□ -0.27
CHRNA4-209ENST00000627000 COX7A2LO14548 114 aa13.36□□□□□ -0.27
CHRNA4-209ENST00000627000 RPL13AP40429 203 aaKnown RBP13.36□□□□□ -0.27
CHRNA4-209ENST00000627000 C2orf82Q6UX34 121 aa13.36□□□□□ -0.27
CHRNA4-209ENST00000627000 LINC00158P58513 81 aa13.35□□□□□ -0.27
CHRNA4-209ENST00000627000 CARD19Q96LW7 228 aa13.35□□□□□ -0.27
CHRNA4-209ENST00000627000 PFN2P35080 140 aa13.35□□□□□ -0.27
CHRNA4-209ENST00000627000 WFDC10BQ8IUB3 73 aa13.35□□□□□ -0.27
CHRNA4-209ENST00000627000 Q8IZM0 81 aa13.35□□□□□ -0.27
CHRNA4-209ENST00000627000 LINC01561Q8N1V8 128 aa13.35□□□□□ -0.27
CHRNA4-209ENST00000627000 MRAPQ8TCY5 172 aa13.35□□□□□ -0.27
CHRNA4-209ENST00000627000 NBEAL1Q6ZS30 2694 aa13.35□□□□□ -0.27
CHRNA4-209ENST00000627000 DEFB131BA0A096LNP1 70 aa13.34□□□□□ -0.27
CHRNA4-209ENST00000627000 TRBV30A0A0K0K1B3 111 aa13.34□□□□□ -0.27
CHRNA4-209ENST00000627000 MT-ATP8P03928 68 aa13.34□□□□□ -0.27
CHRNA4-209ENST00000627000 DEFB121Q5J5C9 76 aa13.34□□□□□ -0.27
CHRNA4-209ENST00000627000 ENHOQ6UWT2 76 aa13.34□□□□□ -0.27
CHRNA4-209ENST00000627000 ANKRD29Q8N6D5 301 aa13.34□□□□□ -0.27
CHRNA4-209ENST00000627000 COPS9Q8WXC6 57 aa13.34□□□□□ -0.27
CHRNA4-209ENST00000627000 PRR34Q9NV39 138 aa13.34□□□□□ -0.27
CHRNA4-209ENST00000627000 XGP55808 180 aa13.33□□□□□ -0.28
CHRNA4-209ENST00000627000 IBA57-AS1B1ANH7 110 aa13.32□□□□□ -0.28
CHRNA4-209ENST00000627000 SLC25A20O43772 301 aa13.32□□□□□ -0.28
CHRNA4-209ENST00000627000 KIAA0087Q14695 138 aa13.32□□□□□ -0.28
CHRNA4-209ENST00000627000 MALP21145 153 aa13.32□□□□□ -0.28
CHRNA4-209ENST00000627000 ESRGQ1W209 222 aa13.31□□□□□ -0.28
CHRNA4-209ENST00000627000 ATXN8Q156A1 80 aa13.31□□□□□ -0.28
CHRNA4-209ENST00000627000 MDFIQ99750 246 aa13.31□□□□□ -0.28
CHRNA4-209ENST00000627000 TM2D3Q9BRN9 247 aa13.3□□□□□ -0.28
CHRNA4-209ENST00000627000 C9JAW5 83 aa13.29□□□□□ -0.28
CHRNA4-209ENST00000627000 UBE2WQ96B02 151 aa13.29□□□□□ -0.28
CHRNA4-209ENST00000627000 HUWE1Q7Z6Z7 4374 aaKnown RBP13.29□□□□□ -0.28
CHRNA4-209ENST00000627000 CCL18P55774 89 aa13.28□□□□□ -0.28
CHRNA4-209ENST00000627000 PPDPFQ9H3Y8 114 aa13.28□□□□□ -0.28
CHRNA4-209ENST00000627000 SND1-IT1Q9HBX3 110 aa13.28□□□□□ -0.28
CHRNA4-209ENST00000627000 CFAP161Q6P656 301 aa13.27□□□□□ -0.28
CHRNA4-209ENST00000627000 LINC01600Q96MT4 127 aa13.27□□□□□ -0.28
CHRNA4-209ENST00000627000 CLEC2BQ92478 149 aa13.26□□□□□ -0.29
CHRNA4-209ENST00000627000 ANAPC13Q9BS18 74 aa13.26□□□□□ -0.29
CHRNA4-209ENST00000627000 MGAM2Q2M2H8 2515 aa13.26□□□□□ -0.29
CHRNA4-209ENST00000627000 IGKV2-28A0A075B6P5 120 aa13.25□□□□□ -0.29
CHRNA4-209ENST00000627000 IGKV2D-28P01615 120 aa13.25□□□□□ -0.29
CHRNA4-209ENST00000627000 CRPP02741 224 aa13.25□□□□□ -0.29
CHRNA4-209ENST00000627000 LINC00526Q96FQ7 95 aa13.25□□□□□ -0.29
CHRNA4-209ENST00000627000 C6orf223Q8N319 242 aa13.24□□□□□ -0.29
CHRNA4-209ENST00000627000 COX6CP09669 75 aa13.24□□□□□ -0.29
CHRNA4-209ENST00000627000 C9orf116Q5BN46 136 aaPredicted RBP13.24□□□□□ -0.29
CHRNA4-209ENST00000627000 LINC00337Q8N6G1 96 aa13.24□□□□□ -0.29
CHRNA4-209ENST00000627000 SNCGO76070 127 aa13.23□□□□□ -0.29
CHRNA4-209ENST00000627000 LINC01620Q4KN68 170 aa13.23□□□□□ -0.29
CHRNA4-209ENST00000627000 KLK5Q9Y337 293 aaPredicted RBP13.23□□□□□ -0.29
CHRNA4-209ENST00000627000 CXCL5P42830 114 aa13.22□□□□□ -0.29
CHRNA4-209ENST00000627000 SPAG11BQ08648 103 aa13.22□□□□□ -0.29
CHRNA4-209ENST00000627000 C10orf25Q5T742 122 aa13.21□□□□□ -0.29
CHRNA4-209ENST00000627000 SVIPQ8NHG7 77 aa13.21□□□□□ -0.29
CHRNA4-209ENST00000627000 TRBV10-2A0A0K0K1G8 114 aa13.21□□□□□ -0.3
CHRNA4-209ENST00000627000 TRAV10A0A0B4J240 114 aa13.2□□□□□ -0.3
CHRNA4-209ENST00000627000 TRAV8-4A0A0B4J246 113 aa13.2□□□□□ -0.3
CHRNA4-209ENST00000627000 GAGE2BQ13066 116 aa13.2□□□□□ -0.3
CHRNA4-209ENST00000627000 GAGE2EQ4V326 116 aa13.2□□□□□ -0.3
CHRNA4-209ENST00000627000 UNQ6190/PRO20217Q6UXQ8 127 aa13.2□□□□□ -0.3
CHRNA4-209ENST00000627000 GAGE2DQ9UEU5 116 aa13.2□□□□□ -0.3
CHRNA4-209ENST00000627000 TRAV13-2A0A0B4J235 113 aa13.19□□□□□ -0.3
CHRNA4-209ENST00000627000 Q6Q795 121 aa13.19□□□□□ -0.3
CHRNA4-209ENST00000627000 NTN5Q8WTR8 489 aaPredicted RBP13.19□□□□□ -0.3
CHRNA4-209ENST00000627000 LST1O00453 97 aa13.18□□□□□ -0.3
CHRNA4-209ENST00000627000 KRTAP26-1Q6PEX3 210 aa13.18□□□□□ -0.3
CHRNA4-209ENST00000627000 H3BT86 120 aa13.17□□□□□ -0.3
CHRNA4-209ENST00000627000 LINC01556Q5JQF7 62 aa13.16□□□□□ -0.3
CHRNA4-209ENST00000627000 COX17Q14061 63 aa13.15□□□□□ -0.3
CHRNA4-209ENST00000627000 PRR3P79522 188 aaKnown RBP13.14□□□□□ -0.31
CHRNA4-209ENST00000627000 TTC32Q5I0X7 151 aa13.14□□□□□ -0.31
CHRNA4-209ENST00000627000 RPL28P46779 137 aaKnown RBP13.13□□□□□ -0.31
CHRNA4-209ENST00000627000 HIGD2BQ4VC39 106 aa13.13□□□□□ -0.31
CHRNA4-209ENST00000627000 C15orf53Q8NAA6 179 aa13.13□□□□□ -0.31
CHRNA4-209ENST00000627000 SMIM11BQ8TCY0 68 aa13.13□□□□□ -0.31
CHRNA4-209ENST00000627000 LINC00588Q9Y4M8 146 aa13.13□□□□□ -0.31
CHRNA4-209ENST00000627000 OR13C6PQ8NH95 151 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms