RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 TM2D3Q9BRN9 247 aa11.63□□□□□ -0.55
SHKBP1-216ENST00000598201 IGLV10-54A0A075B6I4 117 aa11.63□□□□□ -0.55
SHKBP1-216ENST00000598201 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.63□□□□□ -0.55
SHKBP1-216ENST00000598201 HERV-K104P63124 156 aa11.63□□□□□ -0.55
SHKBP1-216ENST00000598201 MEIG1Q5JSS6 88 aa11.63□□□□□ -0.55
SHKBP1-216ENST00000598201 IGHV3-33P01772 117 aa11.62□□□□□ -0.55
SHKBP1-216ENST00000598201 C11orf45Q8TAV5 145 aa11.62□□□□□ -0.55
SHKBP1-216ENST00000598201 IFITM1P13164 125 aa11.61□□□□□ -0.55
SHKBP1-216ENST00000598201 CHCHD10Q8WYQ3 142 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-216ENST00000598201 NHLRC4P0CG21 123 aaPredicted RBP11.61□□□□□ -0.55
SHKBP1-216ENST00000598201 SOSTDC1Q6X4U4 206 aa11.61□□□□□ -0.55
SHKBP1-216ENST00000598201 LINC00308Q8TCZ7 52 aa11.61□□□□□ -0.55
SHKBP1-216ENST00000598201 DEFB131BA0A096LNP1 70 aa11.59□□□□□ -0.55
SHKBP1-216ENST00000598201 LOC107984156A0A0G2JMH3 177 aa11.59□□□□□ -0.55
SHKBP1-216ENST00000598201 CD164L2Q6UWJ8 174 aa11.59□□□□□ -0.55
SHKBP1-216ENST00000598201 ARL17AQ8IVW1 177 aa11.59□□□□□ -0.55
SHKBP1-216ENST00000598201 HUWE1Q7Z6Z7 4374 aaKnown RBP11.59□□□□□ -0.55
SHKBP1-216ENST00000598201 H3BMG7 143 aa11.59□□□□□ -0.55
SHKBP1-216ENST00000598201 H7C2G1 150 aa11.59□□□□□ -0.55
SHKBP1-216ENST00000598201 F8W1H4 67 aa11.58□□□□□ -0.56
SHKBP1-216ENST00000598201 KLK12Q9UKR0 248 aa11.58□□□□□ -0.56
SHKBP1-216ENST00000598201 WFDC10BQ8IUB3 73 aa11.58□□□□□ -0.56
SHKBP1-216ENST00000598201 ERG28Q9UKR5 140 aa11.58□□□□□ -0.56
SHKBP1-216ENST00000598201 COL7A1Q02388 2944 aa11.57□□□□□ -0.56
SHKBP1-216ENST00000598201 C6orf226Q5I0X4 101 aa11.56□□□□□ -0.56
SHKBP1-216ENST00000598201 PRR34Q9NV39 138 aa11.56□□□□□ -0.56
SHKBP1-216ENST00000598201 COX7A2LO14548 114 aa11.56□□□□□ -0.56
SHKBP1-216ENST00000598201 FOXI1Q12951 378 aa11.56□□□□□ -0.56
SHKBP1-216ENST00000598201 ESRGQ1W209 222 aa11.56□□□□□ -0.56
SHKBP1-216ENST00000598201 ENHOQ6UWT2 76 aa11.56□□□□□ -0.56
SHKBP1-216ENST00000598201 LINC01561Q8N1V8 128 aa11.56□□□□□ -0.56
SHKBP1-216ENST00000598201 DNAH9Q9NYC9 4486 aa11.56□□□□□ -0.56
SHKBP1-216ENST00000598201 Q8IZM0 81 aa11.55□□□□□ -0.56
SHKBP1-216ENST00000598201 C2orf82Q6UX34 121 aa11.54□□□□□ -0.56
SHKBP1-216ENST00000598201 MIR7-3HGQ8N6C7 128 aa11.54□□□□□ -0.56
SHKBP1-216ENST00000598201 PSMB2P49721 201 aa11.53□□□□□ -0.56
SHKBP1-216ENST00000598201 KIAA0087Q14695 138 aa11.53□□□□□ -0.56
SHKBP1-216ENST00000598201 TCL1BO95988 128 aa11.53□□□□□ -0.56
SHKBP1-216ENST00000598201 Q1RN00 199 aa11.53□□□□□ -0.56
SHKBP1-216ENST00000598201 LINC00158P58513 81 aa11.52□□□□□ -0.57
SHKBP1-216ENST00000598201 IBA57-AS1B1ANH7 110 aa11.51□□□□□ -0.57
SHKBP1-216ENST00000598201 SCGB1C2P0DMR2 95 aa11.51□□□□□ -0.57
SHKBP1-216ENST00000598201 MALP21145 153 aa11.51□□□□□ -0.57
SHKBP1-216ENST00000598201 PFN2P35080 140 aa11.51□□□□□ -0.57
SHKBP1-216ENST00000598201 PRO0461Q9UI25 63 aa11.51□□□□□ -0.57
SHKBP1-216ENST00000598201 UBE2WQ96B02 151 aa11.51□□□□□ -0.57
SHKBP1-216ENST00000598201 TGP01266 2768 aa11.5□□□□□ -0.57
SHKBP1-216ENST00000598201 RPL13AP40429 203 aaKnown RBP11.5□□□□□ -0.57
SHKBP1-216ENST00000598201 WFDC2Q14508 124 aa11.5□□□□□ -0.57
SHKBP1-216ENST00000598201 LYRM7Q5U5X0 104 aa11.5□□□□□ -0.57
SHKBP1-216ENST00000598201 COPS9Q8WXC6 57 aa11.5□□□□□ -0.57
SHKBP1-216ENST00000598201 TRIAP1O43715 76 aa11.5□□□□□ -0.57
SHKBP1-216ENST00000598201 TRAV10A0A0B4J240 114 aa11.48□□□□□ -0.57
SHKBP1-216ENST00000598201 TRBV30A0A0K0K1B3 111 aa11.48□□□□□ -0.57
SHKBP1-216ENST00000598201 PPDPFQ9H3Y8 114 aa11.48□□□□□ -0.57
SHKBP1-216ENST00000598201 CRPP02741 224 aa11.48□□□□□ -0.57
SHKBP1-216ENST00000598201 TRBV20-1A0A075B6N2 111 aa11.47□□□□□ -0.57
SHKBP1-216ENST00000598201 CCL18P55774 89 aa11.47□□□□□ -0.57
SHKBP1-216ENST00000598201 SS18L2Q9UHA2 77 aa11.47□□□□□ -0.57
SHKBP1-216ENST00000598201 KLK5Q9Y337 293 aaPredicted RBP11.46□□□□□ -0.57
SHKBP1-216ENST00000598201 SMCPP49901 116 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-216ENST00000598201 C6orf223Q8N319 242 aa11.45□□□□□ -0.58
SHKBP1-216ENST00000598201 LINC00526Q96FQ7 95 aa11.45□□□□□ -0.58
SHKBP1-216ENST00000598201 SND1-IT1Q9HBX3 110 aa11.45□□□□□ -0.58
SHKBP1-216ENST00000598201 TRAV8-4A0A0B4J246 113 aa11.45□□□□□ -0.58
SHKBP1-216ENST00000598201 STAB2Q8WWQ8 2551 aa11.44□□□□□ -0.58
SHKBP1-216ENST00000598201 IGKV2-28A0A075B6P5 120 aa11.44□□□□□ -0.58
SHKBP1-216ENST00000598201 IGKV2D-28P01615 120 aa11.44□□□□□ -0.58
SHKBP1-216ENST00000598201 CXCL5P42830 114 aa11.44□□□□□ -0.58
SHKBP1-216ENST00000598201 SPAG11BQ08648 103 aa11.44□□□□□ -0.58
SHKBP1-216ENST00000598201 C9orf116Q5BN46 136 aaPredicted RBP11.44□□□□□ -0.58
SHKBP1-216ENST00000598201 KRTAP26-1Q6PEX3 210 aa11.44□□□□□ -0.58
SHKBP1-216ENST00000598201 LINC01556Q5JQF7 62 aa11.43□□□□□ -0.58
SHKBP1-216ENST00000598201 C10orf25Q5T742 122 aa11.43□□□□□ -0.58
SHKBP1-216ENST00000598201 LINC00337Q8N6G1 96 aa11.42□□□□□ -0.58
SHKBP1-216ENST00000598201 ETDBQ3ZM63 59 aa11.42□□□□□ -0.58
SHKBP1-216ENST00000598201 UNQ6190/PRO20217Q6UXQ8 127 aa11.42□□□□□ -0.58
SHKBP1-216ENST00000598201 C15orf53Q8NAA6 179 aa11.42□□□□□ -0.58
SHKBP1-216ENST00000598201 CDIP1Q9H305 208 aa11.42□□□□□ -0.58
SHKBP1-216ENST00000598201 LINC00588Q9Y4M8 146 aa11.4□□□□□ -0.58
SHKBP1-216ENST00000598201 CLEC2BQ92478 149 aa11.4□□□□□ -0.58
SHKBP1-216ENST00000598201 ANAPC13Q9BS18 74 aa11.4□□□□□ -0.58
SHKBP1-216ENST00000598201 ATXN8Q156A1 80 aa11.39□□□□□ -0.59
SHKBP1-216ENST00000598201 COX6CP09669 75 aa11.39□□□□□ -0.59
SHKBP1-216ENST00000598201 DNAH10OSP0CZ25 163 aa11.38□□□□□ -0.59
SHKBP1-216ENST00000598201 COX17Q14061 63 aa11.38□□□□□ -0.59
SHKBP1-216ENST00000598201 TRAV13-2A0A0B4J235 113 aa11.37□□□□□ -0.59
SHKBP1-216ENST00000598201 C9JAW5 83 aa11.37□□□□□ -0.59
SHKBP1-216ENST00000598201 LINC01620Q4KN68 170 aa11.36□□□□□ -0.59
SHKBP1-216ENST00000598201 NTN5Q8WTR8 489 aaPredicted RBP11.36□□□□□ -0.59
SHKBP1-216ENST00000598201 WWC2-AS2Q96NR7 200 aa11.36□□□□□ -0.59
SHKBP1-216ENST00000598201 MT-ATP8P03928 68 aa11.35□□□□□ -0.59
SHKBP1-216ENST00000598201 HIGD2BQ4VC39 106 aa11.35□□□□□ -0.59
SHKBP1-216ENST00000598201 LST1O00453 97 aa11.34□□□□□ -0.59
SHKBP1-216ENST00000598201 SLC25A20O43772 301 aa11.34□□□□□ -0.59
SHKBP1-216ENST00000598201 C1orf43Q9BWL3 253 aa11.34□□□□□ -0.59
SHKBP1-216ENST00000598201 IGKV2D-24A0A075B6R9 120 aa11.34□□□□□ -0.59
SHKBP1-216ENST00000598201 PRR3P79522 188 aaKnown RBP11.34□□□□□ -0.59
SHKBP1-216ENST00000598201 C15orf56Q8N910 161 aa11.34□□□□□ -0.59
SHKBP1-216ENST00000598201 B5MCH6 92 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms