RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 CKS1BP61024 79 aa9.24□□□□□ -0.93
LIG1-215ENST00000597901 FAM19A5Q7Z5A7 132 aaPredicted RBP9.24□□□□□ -0.93
LIG1-215ENST00000597901 KRTAP11-1Q8IUC1 163 aa9.24□□□□□ -0.93
LIG1-215ENST00000597901 GEMIN7Q9H840 131 aaKnown RBP9.24□□□□□ -0.93
LIG1-215ENST00000597901 FABP9Q0Z7S8 132 aa9.23□□□□□ -0.93
LIG1-215ENST00000597901 Q8IZM0 81 aa9.23□□□□□ -0.93
LIG1-215ENST00000597901 RPS10P5Q9NQ39 176 aa9.23□□□□□ -0.93
LIG1-215ENST00000597901 CARHSP1Q9Y2V2 147 aaKnown RBP9.23□□□□□ -0.93
LIG1-215ENST00000597901 TNXBP22105 4242 aa9.23□□□□□ -0.93
LIG1-215ENST00000597901 C9orf129Q5T035 196 aaKnown RBP9.22□□□□□ -0.93
LIG1-215ENST00000597901 MRPL18Q9H0U6 180 aaKnown RBP9.22□□□□□ -0.93
LIG1-215ENST00000597901 LINC01549A6NIU2 74 aa9.21□□□□□ -0.94
LIG1-215ENST00000597901 IGLV7-43P04211 117 aa9.21□□□□□ -0.94
LIG1-215ENST00000597901 ODF1Q14990 250 aa9.21□□□□□ -0.94
LIG1-215ENST00000597901 RHEBQ15382 184 aa9.21□□□□□ -0.94
LIG1-215ENST00000597901 FA2HQ7L5A8 372 aa9.2□□□□□ -0.94
LIG1-215ENST00000597901 CST9LQ9H4G1 147 aa9.2□□□□□ -0.94
LIG1-215ENST00000597901 TINCRA0A1B0GVN0 87 aa9.19□□□□□ -0.94
LIG1-215ENST00000597901 LINC00469Q8N7U9 141 aa9.19□□□□□ -0.94
LIG1-215ENST00000597901 M0QXV9 152 aa9.18□□□□□ -0.94
LIG1-215ENST00000597901 SMCO4Q9NRQ5 59 aa9.18□□□□□ -0.94
LIG1-215ENST00000597901 IGLV5-45A0A087WSX0 123 aa9.17□□□□□ -0.94
LIG1-215ENST00000597901 F8VRH5 84 aa9.17□□□□□ -0.94
LIG1-215ENST00000597901 UBE2BP63146 152 aa9.17□□□□□ -0.94
LIG1-215ENST00000597901 PMVKQ15126 192 aa9.17□□□□□ -0.94
LIG1-215ENST00000597901 PDZD11Q5EBL8 140 aa9.17□□□□□ -0.94
LIG1-215ENST00000597901 DIRC1Q969H9 104 aa9.17□□□□□ -0.94
LIG1-215ENST00000597901 SMIM1B2RUZ4 78 aa9.16□□□□□ -0.94
LIG1-215ENST00000597901 XAGE1AQ9HD64 81 aa9.16□□□□□ -0.94
LIG1-215ENST00000597901 TRAPPC1Q9Y5R8 145 aa9.16□□□□□ -0.94
LIG1-215ENST00000597901 CXCL5P42830 114 aa9.15□□□□□ -0.94
LIG1-215ENST00000597901 COX7B2Q8TF08 81 aa9.15□□□□□ -0.94
LIG1-215ENST00000597901 C22orf24Q9Y442 160 aa9.15□□□□□ -0.94
LIG1-215ENST00000597901 UBR4Q5T4S7 5183 aa9.14□□□□□ -0.95
LIG1-215ENST00000597901 APOC3P02656 99 aa9.14□□□□□ -0.95
LIG1-215ENST00000597901 LINC00614P0C842 121 aa9.14□□□□□ -0.95
LIG1-215ENST00000597901 URB1-AS1Q96HZ7 61 aa9.14□□□□□ -0.95
LIG1-215ENST00000597901 H0Y9J4 135 aa9.13□□□□□ -0.95
LIG1-215ENST00000597901 SPINK8P0C7L1 97 aa9.13□□□□□ -0.95
LIG1-215ENST00000597901 C18orf32Q8TCD1 76 aa9.13□□□□□ -0.95
LIG1-215ENST00000597901 A0A096LNJ9 63 aa9.12□□□□□ -0.95
LIG1-215ENST00000597901 LBHQ53QV2 105 aaPredicted RBP9.12□□□□□ -0.95
LIG1-215ENST00000597901 NDUFA6P56556 154 aa9.11□□□□□ -0.95
LIG1-215ENST00000597901 PRR26Q8N8Z3 221 aa9.11□□□□□ -0.95
LIG1-215ENST00000597901 H3BRM9 83 aa9.1□□□□□ -0.95
LIG1-215ENST00000597901 SNAPINO95295 136 aa9.1□□□□□ -0.95
LIG1-215ENST00000597901 RAB5BP61020 215 aa9.1□□□□□ -0.95
LIG1-215ENST00000597901 IGLC3P0DOY3 106 aa9.09□□□□□ -0.95
LIG1-215ENST00000597901 NDUFA5Q16718 116 aa9.09□□□□□ -0.95
LIG1-215ENST00000597901 SVBPQ8N300 66 aa9.09□□□□□ -0.95
LIG1-215ENST00000597901 TP73-AS1Q9UF72 201 aa9.09□□□□□ -0.95
LIG1-215ENST00000597901 ZNF861PO60384 105 aa9.08□□□□□ -0.96
LIG1-215ENST00000597901 HBDP02042 147 aa9.08□□□□□ -0.96
LIG1-215ENST00000597901 PMCHL1Q16048 86 aa9.08□□□□□ -0.96
LIG1-215ENST00000597901 NUPR1O60356 82 aa9.07□□□□□ -0.96
LIG1-215ENST00000597901 KRTAP1-4P0C5Y4 121 aa9.07□□□□□ -0.96
LIG1-215ENST00000597901 MRPL55Q7Z7F7 128 aaKnown RBP9.07□□□□□ -0.96
LIG1-215ENST00000597901 IGLV5-39A0A0G2JS06 123 aa9.06□□□□□ -0.96
LIG1-215ENST00000597901 ATP5LO75964 103 aa9.06□□□□□ -0.96
LIG1-215ENST00000597901 ZNF22P17026 224 aaPredicted RBP9.06□□□□□ -0.96
LIG1-215ENST00000597901 BAGE3Q86Y29 109 aa9.06□□□□□ -0.96
LIG1-215ENST00000597901 LINC00167Q96N53 147 aa9.06□□□□□ -0.96
LIG1-215ENST00000597901 IGLV1-50A0A075B6I6 118 aa9.05□□□□□ -0.96
LIG1-215ENST00000597901 YPEL4Q96NS1 127 aa9.05□□□□□ -0.96
LIG1-215ENST00000597901 RPL37AP8A6NKH3 93 aa9.04□□□□□ -0.96
LIG1-215ENST00000597901 PFN2P35080 140 aa9.03□□□□□ -0.96
LIG1-215ENST00000597901 IGLV5-37A0A075B6J1 123 aa9.02□□□□□ -0.97
LIG1-215ENST00000597901 GAGE10A6NGK3 116 aa9.02□□□□□ -0.97
LIG1-215ENST00000597901 C11orf86A6NJI1 115 aa9.02□□□□□ -0.97
LIG1-215ENST00000597901 BCE1O60756 84 aa9.02□□□□□ -0.97
LIG1-215ENST00000597901 TMEM170BQ5T4T1 132 aa9.01□□□□□ -0.97
LIG1-215ENST00000597901 LRP2P98164 4655 aa9.01□□□□□ -0.97
LIG1-215ENST00000597901 RPL28P46779 137 aaKnown RBP9□□□□□ -0.97
LIG1-215ENST00000597901 NKAPP1Q8N9T2 125 aa9□□□□□ -0.97
LIG1-215ENST00000597901 CHCHD1Q96BP2 118 aaKnown RBP9□□□□□ -0.97
LIG1-215ENST00000597901 ERG28Q9UKR5 140 aa9□□□□□ -0.97
LIG1-215ENST00000597901 CHTOPQ9Y3Y2 248 aaKnown RBP9□□□□□ -0.97
LIG1-215ENST00000597901 COX17Q14061 63 aa8.99□□□□□ -0.97
LIG1-215ENST00000597901 ZNF625Q96I27 306 aaPredicted RBP8.99□□□□□ -0.97
LIG1-215ENST00000597901 SND1-IT1Q9HBX3 110 aa8.99□□□□□ -0.97
LIG1-215ENST00000597901 SCO1O75880 301 aa8.98□□□□□ -0.97
LIG1-215ENST00000597901 RPL13AP40429 203 aaKnown RBP8.98□□□□□ -0.97
LIG1-215ENST00000597901 TRAV12-1A0A0B4J245 112 aa8.97□□□□□ -0.97
LIG1-215ENST00000597901 IFI27L1Q96BM0 104 aa8.97□□□□□ -0.97
LIG1-215ENST00000597901 VPREB1P12018 145 aa8.96□□□□□ -0.98
LIG1-215ENST00000597901 TMEM223A0PJW6 202 aa8.95□□□□□ -0.98
LIG1-215ENST00000597901 RPL24P83731 157 aaKnown RBP8.95□□□□□ -0.98
LIG1-215ENST00000597901 SFTA2Q6UW10 78 aa8.95□□□□□ -0.98
LIG1-215ENST00000597901 CBLN2Q8IUK8 224 aa8.95□□□□□ -0.98
LIG1-215ENST00000597901 IGKV2-28A0A075B6P5 120 aa8.94□□□□□ -0.98
LIG1-215ENST00000597901 IGKV2D-28P01615 120 aa8.94□□□□□ -0.98
LIG1-215ENST00000597901 KRTAP13-1Q8IUC0 172 aa8.94□□□□□ -0.98
LIG1-215ENST00000597901 FAM19A2Q8N3H0 131 aa8.94□□□□□ -0.98
LIG1-215ENST00000597901 HSBP1O75506 76 aa8.93□□□□□ -0.98
LIG1-215ENST00000597901 TRGC2P03986 189 aa8.93□□□□□ -0.98
LIG1-215ENST00000597901 UBE2AP49459 152 aa8.93□□□□□ -0.98
LIG1-215ENST00000597901 LINC00158P58513 81 aa8.93□□□□□ -0.98
LIG1-215ENST00000597901 Q8NDZ9 215 aa8.92□□□□□ -0.98
LIG1-215ENST00000597901 A0A087X002 238 aa8.91□□□□□ -0.98
LIG1-215ENST00000597901 A0A0U1RRA0 63 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms