RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	NUPR1	O60356	82 aa		6.24	□□□□□ -1.41
LSM4-205	ENST00000597776	TSPAN13	O95857	204 aa		6.24	□□□□□ -1.41
LSM4-205	ENST00000597776	NPS	P0C0P6	89 aa		6.24	□□□□□ -1.41
LSM4-205	ENST00000597776	HERVK_113	P63121	156 aa		6.24	□□□□□ -1.41
LSM4-205	ENST00000597776	PNRC1	Q12796	327 aa	Predicted RBP	6.24	□□□□□ -1.41
LSM4-205	ENST00000597776	LBH	Q53QV2	105 aa	Predicted RBP	6.24	□□□□□ -1.41
LSM4-205	ENST00000597776	ANAPC16	Q96DE5	110 aa		6.24	□□□□□ -1.41
LSM4-205	ENST00000597776	GEMIN7	Q9H840	131 aa	Known RBP	6.24	□□□□□ -1.41
LSM4-205	ENST00000597776	NXT2	Q9NPJ8	142 aa	Known RBP	6.24	□□□□□ -1.41
LSM4-205	ENST00000597776		A0A087X002	238 aa		6.23	□□□□□ -1.41
LSM4-205	ENST00000597776		K7EMI3	77 aa		6.23	□□□□□ -1.41
LSM4-205	ENST00000597776	MRPL55	Q7Z7F7	128 aa	Known RBP	6.23	□□□□□ -1.41
LSM4-205	ENST00000597776	RPL37AP8	A6NKH3	93 aa		6.22	□□□□□ -1.41
LSM4-205	ENST00000597776	SMIM1	B2RUZ4	78 aa		6.22	□□□□□ -1.41
LSM4-205	ENST00000597776	BCE1	O60756	84 aa		6.22	□□□□□ -1.41
LSM4-205	ENST00000597776	SEC11A	P67812	179 aa		6.22	□□□□□ -1.41
LSM4-205	ENST00000597776	KIAA1644	Q3SXP7	199 aa		6.22	□□□□□ -1.41
LSM4-205	ENST00000597776	PAPPA-AS1	Q5QFB9	102 aa		6.22	□□□□□ -1.41
LSM4-205	ENST00000597776	TOMM6	Q96B49	74 aa		6.22	□□□□□ -1.41
LSM4-205	ENST00000597776	TIMM17A	Q99595	171 aa		6.22	□□□□□ -1.41
LSM4-205	ENST00000597776	TP73-AS1	Q9UF72	201 aa		6.22	□□□□□ -1.41
LSM4-205	ENST00000597776	GAGE10	A6NGK3	116 aa		6.21	□□□□□ -1.42
LSM4-205	ENST00000597776	ADCYAP1	P18509	176 aa		6.21	□□□□□ -1.42
LSM4-205	ENST00000597776	RPL28	P46779	137 aa	Known RBP	6.21	□□□□□ -1.42
LSM4-205	ENST00000597776	LINC00167	Q96N53	147 aa		6.21	□□□□□ -1.42
LSM4-205	ENST00000597776	CXCL5	P42830	114 aa		6.2	□□□□□ -1.42
LSM4-205	ENST00000597776	RAB14	P61106	215 aa		6.2	□□□□□ -1.42
LSM4-205	ENST00000597776	ERAS	Q7Z444	233 aa		6.2	□□□□□ -1.42
LSM4-205	ENST00000597776	COX7B2	Q8TF08	81 aa		6.2	□□□□□ -1.42
LSM4-205	ENST00000597776	SCGB3A1	Q96QR1	104 aa		6.2	□□□□□ -1.42
LSM4-205	ENST00000597776	ANAPC11	Q9NYG5	84 aa		6.2	□□□□□ -1.42
LSM4-205	ENST00000597776	SPINK8	P0C7L1	97 aa		6.19	□□□□□ -1.42
LSM4-205	ENST00000597776	G0S2	P27469	103 aa		6.19	□□□□□ -1.42
LSM4-205	ENST00000597776	RAB5B	P61020	215 aa		6.19	□□□□□ -1.42
LSM4-205	ENST00000597776	PDZD11	Q5EBL8	140 aa		6.19	□□□□□ -1.42
LSM4-205	ENST00000597776	TYMSOS	Q8TAI1	123 aa		6.19	□□□□□ -1.42
LSM4-205	ENST00000597776	IGLV5-45	A0A087WSX0	123 aa		6.18	□□□□□ -1.42
LSM4-205	ENST00000597776	TINCR	A0A1B0GVN0	87 aa		6.18	□□□□□ -1.42
LSM4-205	ENST00000597776	SCO1	O75880	301 aa		6.18	□□□□□ -1.42
LSM4-205	ENST00000597776	CRYGA	P11844	174 aa		6.18	□□□□□ -1.42
LSM4-205	ENST00000597776	KRTAP13-2	Q52LG2	175 aa		6.17	□□□□□ -1.42
LSM4-205	ENST00000597776	CLLU1	Q5K131	121 aa		6.17	□□□□□ -1.42
LSM4-205	ENST00000597776	KRTAP13-1	Q8IUC0	172 aa		6.17	□□□□□ -1.42
LSM4-205	ENST00000597776	CST9L	Q9H4G1	147 aa		6.17	□□□□□ -1.42
LSM4-205	ENST00000597776	IGLV5-37	A0A075B6J1	123 aa		6.16	□□□□□ -1.42
LSM4-205	ENST00000597776	UBE2A	P49459	152 aa		6.16	□□□□□ -1.42
LSM4-205	ENST00000597776	NKAPP1	Q8N9T2	125 aa		6.16	□□□□□ -1.42
LSM4-205	ENST00000597776	IGKV2-28	A0A075B6P5	120 aa		6.15	□□□□□ -1.42
LSM4-205	ENST00000597776	LINC01546	A6NGU7	62 aa		6.15	□□□□□ -1.42
LSM4-205	ENST00000597776	IGKV2D-28	P01615	120 aa		6.15	□□□□□ -1.42
LSM4-205	ENST00000597776	RETNLB	Q9BQ08	111 aa		6.15	□□□□□ -1.42
LSM4-205	ENST00000597776	PFN2	P35080	140 aa		6.14	□□□□□ -1.43
LSM4-205	ENST00000597776	PMVK	Q15126	192 aa		6.14	□□□□□ -1.43
LSM4-205	ENST00000597776	TRAV9-1	A0A075B6T8	112 aa		6.13	□□□□□ -1.43
LSM4-205	ENST00000597776		A0A0U1RQV1	116 aa		6.13	□□□□□ -1.43
LSM4-205	ENST00000597776	ATP5L	O75964	103 aa		6.13	□□□□□ -1.43
LSM4-205	ENST00000597776	PRLH	P81277	87 aa		6.13	□□□□□ -1.43
LSM4-205	ENST00000597776	UQCC3	Q6UW78	93 aa		6.13	□□□□□ -1.43
LSM4-205	ENST00000597776	GNB1L	Q9BYB4	327 aa		6.13	□□□□□ -1.43
LSM4-205	ENST00000597776	LINC01549	A6NIU2	74 aa		6.12	□□□□□ -1.43
LSM4-205	ENST00000597776	TMEM238	C9JI98	176 aa		6.12	□□□□□ -1.43
LSM4-205	ENST00000597776		H3BRM9	83 aa		6.12	□□□□□ -1.43
LSM4-205	ENST00000597776	FA2H	Q7L5A8	372 aa		6.12	□□□□□ -1.43
LSM4-205	ENST00000597776	LINC00304	Q8N9R0	145 aa		6.12	□□□□□ -1.43
LSM4-205	ENST00000597776	MRPL18	Q9H0U6	180 aa	Known RBP	6.12	□□□□□ -1.43
LSM4-205	ENST00000597776	IGLV5-39	A0A0G2JS06	123 aa		6.11	□□□□□ -1.43
LSM4-205	ENST00000597776	TMEM218	A2RU14	115 aa		6.11	□□□□□ -1.43
LSM4-205	ENST00000597776	VPREB1	P12018	145 aa		6.11	□□□□□ -1.43
LSM4-205	ENST00000597776	S100P	P25815	95 aa		6.11	□□□□□ -1.43
LSM4-205	ENST00000597776	IFITM2	Q01629	132 aa		6.11	□□□□□ -1.43
LSM4-205	ENST00000597776	FAM229B	Q4G0N7	80 aa		6.11	□□□□□ -1.43
LSM4-205	ENST00000597776		Q8NDZ9	215 aa		6.11	□□□□□ -1.43
LSM4-205	ENST00000597776	SND1-IT1	Q9HBX3	110 aa		6.11	□□□□□ -1.43
LSM4-205	ENST00000597776	SMCO4	Q9NRQ5	59 aa		6.11	□□□□□ -1.43
LSM4-205	ENST00000597776	FAT4	Q6V0I7	4981 aa		6.1	□□□□□ -1.43
LSM4-205	ENST00000597776	IGKV2D-26	A0A0A0MRZ7	120 aa		6.1	□□□□□ -1.43
LSM4-205	ENST00000597776	IGLC3	P0DOY3	106 aa		6.1	□□□□□ -1.43
LSM4-205	ENST00000597776	ZNF22	P17026	224 aa	Predicted RBP	6.1	□□□□□ -1.43
LSM4-205	ENST00000597776	NDUFA6	P56556	154 aa		6.1	□□□□□ -1.43
LSM4-205	ENST00000597776	FAM19A1	Q7Z5A9	133 aa		6.1	□□□□□ -1.43
LSM4-205	ENST00000597776	TMEM126A	Q9H061	195 aa		6.1	□□□□□ -1.43
LSM4-205	ENST00000597776	ERG28	Q9UKR5	140 aa		6.1	□□□□□ -1.43
LSM4-205	ENST00000597776		A0A096LNJ9	63 aa		6.09	□□□□□ -1.43
LSM4-205	ENST00000597776		M0R378	163 aa		6.09	□□□□□ -1.43
LSM4-205	ENST00000597776	FABP9	Q0Z7S8	132 aa		6.09	□□□□□ -1.43
LSM4-205	ENST00000597776	ZNF625	Q96I27	306 aa	Predicted RBP	6.09	□□□□□ -1.43
LSM4-205	ENST00000597776	MUC17	Q685J3	4493 aa		6.09	□□□□□ -1.43
LSM4-205	ENST00000597776	PMCHL1	Q16048	86 aa		6.08	□□□□□ -1.44
LSM4-205	ENST00000597776	C3orf22	Q8N5N4	141 aa		6.08	□□□□□ -1.44
LSM4-205	ENST00000597776	URB1-AS1	Q96HZ7	61 aa		6.08	□□□□□ -1.44
LSM4-205	ENST00000597776	SEC11C	Q9BY50	192 aa		6.08	□□□□□ -1.44
LSM4-205	ENST00000597776	KRTAP9-2	Q9BYQ4	174 aa		6.08	□□□□□ -1.44
LSM4-205	ENST00000597776	IGLV7-46	A0A075B6I9	117 aa		6.07	□□□□□ -1.44
LSM4-205	ENST00000597776	RPL24	P83731	157 aa	Known RBP	6.07	□□□□□ -1.44
LSM4-205	ENST00000597776	LCE2A	Q5TA79	106 aa	Predicted RBP	6.07	□□□□□ -1.44
LSM4-205	ENST00000597776	CDIP1	Q9H305	208 aa		6.07	□□□□□ -1.44
LSM4-205	ENST00000597776	C11orf86	A6NJI1	115 aa		6.06	□□□□□ -1.44
LSM4-205	ENST00000597776	TPRXL	Q17RH7	258 aa		6.06	□□□□□ -1.44
LSM4-205	ENST00000597776	COMMD7	Q86VX2	200 aa		6.06	□□□□□ -1.44
LSM4-205	ENST00000597776	CBLN2	Q8IUK8	224 aa		6.06	□□□□□ -1.44

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