RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 CDKN2A-AS1Q9UH64 79 aa9.45□□□□□ -0.9
TRIM28-203ENST00000593582 FAM168BA1KXE4 195 aa9.44□□□□□ -0.9
TRIM28-203ENST00000593582 REG3GQ6UW15 175 aa9.44□□□□□ -0.9
TRIM28-203ENST00000593582 PSORS1C2Q9UIG4 136 aa9.44□□□□□ -0.9
TRIM28-203ENST00000593582 APOC3P02656 99 aa9.43□□□□□ -0.9
TRIM28-203ENST00000593582 SRSF9Q13242 221 aaKnown RBP eCLIP9.43□□□□□ -0.9
TRIM28-203ENST00000593582 NDUFA5Q16718 116 aa9.43□□□□□ -0.9
TRIM28-203ENST00000593582 FAM19A5Q7Z5A7 132 aaPredicted RBP9.43□□□□□ -0.9
TRIM28-203ENST00000593582 LINC00469Q8N7U9 141 aa9.43□□□□□ -0.9
TRIM28-203ENST00000593582 LINC01600Q96MT4 127 aa9.43□□□□□ -0.9
TRIM28-203ENST00000593582 SVBPQ8N300 66 aa9.42□□□□□ -0.9
TRIM28-203ENST00000593582 TRAPPC1Q9Y5R8 145 aa9.42□□□□□ -0.9
TRIM28-203ENST00000593582 TINCRA0A1B0GVN0 87 aa9.41□□□□□ -0.9
TRIM28-203ENST00000593582 SNAPINO95295 136 aa9.41□□□□□ -0.9
TRIM28-203ENST00000593582 C1orf137Q5JT78 98 aa9.41□□□□□ -0.9
TRIM28-203ENST00000593582 CST9LQ9H4G1 147 aa9.41□□□□□ -0.9
TRIM28-203ENST00000593582 PLA2G2DQ9UNK4 145 aa9.41□□□□□ -0.9
TRIM28-203ENST00000593582 PMVKQ15126 192 aa9.4□□□□□ -0.9
TRIM28-203ENST00000593582 HMCN2Q8NDA2 5059 aa9.4□□□□□ -0.91
TRIM28-203ENST00000593582 TNXBP22105 4242 aa9.39□□□□□ -0.91
TRIM28-203ENST00000593582 F8VRH5 84 aa9.39□□□□□ -0.91
TRIM28-203ENST00000593582 CXCL5P42830 114 aa9.39□□□□□ -0.91
TRIM28-203ENST00000593582 C9orf129Q5T035 196 aaKnown RBP9.39□□□□□ -0.91
TRIM28-203ENST00000593582 IGLV5-45A0A087WSX0 123 aa9.38□□□□□ -0.91
TRIM28-203ENST00000593582 SMIM1B2RUZ4 78 aa9.38□□□□□ -0.91
TRIM28-203ENST00000593582 M0QXV9 152 aa9.38□□□□□ -0.91
TRIM28-203ENST00000593582 PDZD11Q5EBL8 140 aa9.38□□□□□ -0.91
TRIM28-203ENST00000593582 LINC00614P0C842 121 aa9.37□□□□□ -0.91
TRIM28-203ENST00000593582 UBE2BP63146 152 aa9.37□□□□□ -0.91
TRIM28-203ENST00000593582 C18orf32Q8TCD1 76 aa9.37□□□□□ -0.91
TRIM28-203ENST00000593582 KRTAP7-1Q8IUC3 87 aa9.36□□□□□ -0.91
TRIM28-203ENST00000593582 COX7B2Q8TF08 81 aa9.36□□□□□ -0.91
TRIM28-203ENST00000593582 H3BRM9 83 aa9.35□□□□□ -0.91
TRIM28-203ENST00000593582 IGLV7-43P04211 117 aa9.35□□□□□ -0.91
TRIM28-203ENST00000593582 SPINK8P0C7L1 97 aa9.35□□□□□ -0.91
TRIM28-203ENST00000593582 NDUFA6P56556 154 aa9.35□□□□□ -0.91
TRIM28-203ENST00000593582 RAB5BP61020 215 aa9.35□□□□□ -0.91
TRIM28-203ENST00000593582 XAGE1AQ9HD64 81 aa9.35□□□□□ -0.91
TRIM28-203ENST00000593582 A0A096LNJ9 63 aa9.34□□□□□ -0.91
TRIM28-203ENST00000593582 HBDP02042 147 aa9.34□□□□□ -0.91
TRIM28-203ENST00000593582 KRTAP11-1Q8IUC1 163 aa9.34□□□□□ -0.91
TRIM28-203ENST00000593582 URB1-AS1Q96HZ7 61 aa9.34□□□□□ -0.91
TRIM28-203ENST00000593582 DIRC1Q969H9 104 aa9.33□□□□□ -0.92
TRIM28-203ENST00000593582 IGLC3P0DOY3 106 aa9.32□□□□□ -0.92
TRIM28-203ENST00000593582 KRTAP10-8P60410 259 aa9.32□□□□□ -0.92
TRIM28-203ENST00000593582 PMCHL1Q16048 86 aa9.32□□□□□ -0.92
TRIM28-203ENST00000593582 ATP5LO75964 103 aa9.31□□□□□ -0.92
TRIM28-203ENST00000593582 LBHQ53QV2 105 aaPredicted RBP9.31□□□□□ -0.92
TRIM28-203ENST00000593582 C22orf24Q9Y442 160 aa9.31□□□□□ -0.92
TRIM28-203ENST00000593582 YPEL4Q96NS1 127 aa9.29□□□□□ -0.92
TRIM28-203ENST00000593582 H0Y9J4 135 aa9.28□□□□□ -0.92
TRIM28-203ENST00000593582 ODF1Q14990 250 aa9.28□□□□□ -0.92
TRIM28-203ENST00000593582 TP73-AS1Q9UF72 201 aa9.28□□□□□ -0.92
TRIM28-203ENST00000593582 IGLV5-39A0A0G2JS06 123 aa9.27□□□□□ -0.93
TRIM28-203ENST00000593582 ZNF22P17026 224 aaPredicted RBP9.27□□□□□ -0.93
TRIM28-203ENST00000593582 MRPL55Q7Z7F7 128 aaKnown RBP9.27□□□□□ -0.93
TRIM28-203ENST00000593582 BAGE3Q86Y29 109 aa9.27□□□□□ -0.93
TRIM28-203ENST00000593582 CHCHD1Q96BP2 118 aaKnown RBP9.27□□□□□ -0.93
TRIM28-203ENST00000593582 NUPR1O60356 82 aa9.26□□□□□ -0.93
TRIM28-203ENST00000593582 TMEM170BQ5T4T1 132 aa9.25□□□□□ -0.93
TRIM28-203ENST00000593582 C11orf86A6NJI1 115 aa9.24□□□□□ -0.93
TRIM28-203ENST00000593582 CBLN2Q8IUK8 224 aa9.24□□□□□ -0.93
TRIM28-203ENST00000593582 ZNF861PO60384 105 aa9.23□□□□□ -0.93
TRIM28-203ENST00000593582 PFN2P35080 140 aa9.23□□□□□ -0.93
TRIM28-203ENST00000593582 CHTOPQ9Y3Y2 248 aaKnown RBP9.23□□□□□ -0.93
TRIM28-203ENST00000593582 SFTA2Q6UW10 78 aa9.22□□□□□ -0.93
TRIM28-203ENST00000593582 PRR26Q8N8Z3 221 aa9.22□□□□□ -0.93
TRIM28-203ENST00000593582 NKAPP1Q8N9T2 125 aa9.22□□□□□ -0.93
TRIM28-203ENST00000593582 IFI27L1Q96BM0 104 aa9.22□□□□□ -0.93
TRIM28-203ENST00000593582 UBR4Q5T4S7 5183 aa9.22□□□□□ -0.93
TRIM28-203ENST00000593582 COX17Q14061 63 aa9.21□□□□□ -0.94
TRIM28-203ENST00000593582 LINC00167Q96N53 147 aa9.21□□□□□ -0.94
TRIM28-203ENST00000593582 ERG28Q9UKR5 140 aa9.21□□□□□ -0.94
TRIM28-203ENST00000593582 IGLV1-50A0A075B6I6 118 aa9.2□□□□□ -0.94
TRIM28-203ENST00000593582 IGLV5-37A0A075B6J1 123 aa9.2□□□□□ -0.94
TRIM28-203ENST00000593582 TRAV12-1A0A0B4J245 112 aa9.2□□□□□ -0.94
TRIM28-203ENST00000593582 GAGE10A6NGK3 116 aa9.2□□□□□ -0.94
TRIM28-203ENST00000593582 RPL37AP8A6NKH3 93 aa9.2□□□□□ -0.94
TRIM28-203ENST00000593582 BCE1O60756 84 aa9.2□□□□□ -0.94
TRIM28-203ENST00000593582 HSBP1O75506 76 aa9.2□□□□□ -0.94
TRIM28-203ENST00000593582 TRGC2P03986 189 aa9.19□□□□□ -0.94
TRIM28-203ENST00000593582 KRTAP1-4P0C5Y4 121 aa9.19□□□□□ -0.94
TRIM28-203ENST00000593582 ZNF625Q96I27 306 aaPredicted RBP9.19□□□□□ -0.94
TRIM28-203ENST00000593582 RPL28P46779 137 aaKnown RBP9.18□□□□□ -0.94
TRIM28-203ENST00000593582 SLC7A5P1Q8MH63 180 aa9.18□□□□□ -0.94
TRIM28-203ENST00000593582 FAM19A2Q8N3H0 131 aa9.18□□□□□ -0.94
TRIM28-203ENST00000593582 SND1-IT1Q9HBX3 110 aa9.18□□□□□ -0.94
TRIM28-203ENST00000593582 TMEM223A0PJW6 202 aa9.16□□□□□ -0.94
TRIM28-203ENST00000593582 RPL13AP40429 203 aaKnown RBP9.16□□□□□ -0.94
TRIM28-203ENST00000593582 RPL24P83731 157 aaKnown RBP9.16□□□□□ -0.94
TRIM28-203ENST00000593582 LRP2P98164 4655 aa9.15□□□□□ -0.94
TRIM28-203ENST00000593582 IGKV2-28A0A075B6P5 120 aa9.14□□□□□ -0.95
TRIM28-203ENST00000593582 SCO1O75880 301 aa9.14□□□□□ -0.95
TRIM28-203ENST00000593582 IGKV2D-28P01615 120 aa9.14□□□□□ -0.95
TRIM28-203ENST00000593582 LINC00158P58513 81 aa9.14□□□□□ -0.95
TRIM28-203ENST00000593582 H0Y8G0 127 aa9.13□□□□□ -0.95
TRIM28-203ENST00000593582 LEPROTL1O95214 131 aa9.13□□□□□ -0.95
TRIM28-203ENST00000593582 VPREB1P12018 145 aa9.13□□□□□ -0.95
TRIM28-203ENST00000593582 SERF1AO75920 110 aa9.12□□□□□ -0.95
TRIM28-203ENST00000593582 UBE2AP49459 152 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 762.6 ms