RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 URB1-AS1Q96HZ7 61 aa13.15□□□□□ -0.3
SHMT1-210ENST00000583780 LINC01549A6NIU2 74 aa13.14□□□□□ -0.31
SHMT1-210ENST00000583780 A0A087WZ39 114 aa13.13□□□□□ -0.31
SHMT1-210ENST00000583780 LINC00614P0C842 121 aa13.13□□□□□ -0.31
SHMT1-210ENST00000583780 C2orf48Q96LS8 159 aa13.13□□□□□ -0.31
SHMT1-210ENST00000583780 KRTAP1-4P0C5Y4 121 aa13.12□□□□□ -0.31
SHMT1-210ENST00000583780 PMCHL1Q16048 86 aa13.12□□□□□ -0.31
SHMT1-210ENST00000583780 H0Y9J4 135 aa13.11□□□□□ -0.31
SHMT1-210ENST00000583780 RAB5BP61020 215 aa13.11□□□□□ -0.31
SHMT1-210ENST00000583780 RPL18AQ02543 176 aaKnown RBP13.1□□□□□ -0.31
SHMT1-210ENST00000583780 GEMIN7Q9H840 131 aaKnown RBP13.1□□□□□ -0.31
SHMT1-210ENST00000583780 IGLV1-50A0A075B6I6 118 aa13.09□□□□□ -0.31
SHMT1-210ENST00000583780 A0A096LNJ9 63 aa13.09□□□□□ -0.31
SHMT1-210ENST00000583780 HBDP02042 147 aa13.09□□□□□ -0.31
SHMT1-210ENST00000583780 HERVK_113P63121 156 aa13.09□□□□□ -0.31
SHMT1-210ENST00000583780 SEC11AP67812 179 aa13.09□□□□□ -0.31
SHMT1-210ENST00000583780 RNF151Q2KHN1 245 aa13.09□□□□□ -0.31
SHMT1-210ENST00000583780 FAM19A3Q7Z5A8 133 aa13.09□□□□□ -0.31
SHMT1-210ENST00000583780 FAM168BA1KXE4 195 aa13.07□□□□□ -0.32
SHMT1-210ENST00000583780 NDUFA1O15239 70 aa13.07□□□□□ -0.32
SHMT1-210ENST00000583780 TRGC2P03986 189 aa13.07□□□□□ -0.32
SHMT1-210ENST00000583780 PRR4Q16378 134 aa13.07□□□□□ -0.32
SHMT1-210ENST00000583780 LCE2AQ5TA79 106 aaPredicted RBP13.07□□□□□ -0.32
SHMT1-210ENST00000583780 CST9LQ9H4G1 147 aa13.07□□□□□ -0.32
SHMT1-210ENST00000583780 NDUFA6P56556 154 aa13.06□□□□□ -0.32
SHMT1-210ENST00000583780 PMVKQ15126 192 aa13.06□□□□□ -0.32
SHMT1-210ENST00000583780 LINC01561Q8N1V8 128 aa13.06□□□□□ -0.32
SHMT1-210ENST00000583780 PACRGQ96M98 296 aaPredicted RBP13.06□□□□□ -0.32
SHMT1-210ENST00000583780 TOMM7Q9P0U1 55 aa13.06□□□□□ -0.32
SHMT1-210ENST00000583780 CDKN2A-AS1Q9UH64 79 aa13.06□□□□□ -0.32
SHMT1-210ENST00000583780 LINC00469Q8N7U9 141 aa13.05□□□□□ -0.32
SHMT1-210ENST00000583780 F8WDY8 70 aa13.04□□□□□ -0.32
SHMT1-210ENST00000583780 PRSS2P07478 247 aa13.04□□□□□ -0.32
SHMT1-210ENST00000583780 KIAA0087Q14695 138 aa13.04□□□□□ -0.32
SHMT1-210ENST00000583780 C10orf25Q5T742 122 aa13.04□□□□□ -0.32
SHMT1-210ENST00000583780 UNQ6190/PRO20217Q6UXQ8 127 aa13.04□□□□□ -0.32
SHMT1-210ENST00000583780 KRTAP7-1Q8IUC3 87 aa13.04□□□□□ -0.32
SHMT1-210ENST00000583780 TINCRA0A1B0GVN0 87 aa13.03□□□□□ -0.32
SHMT1-210ENST00000583780 SCO1O75880 301 aa13.03□□□□□ -0.32
SHMT1-210ENST00000583780 PDZD11Q5EBL8 140 aa13.03□□□□□ -0.32
SHMT1-210ENST00000583780 BAGE3Q86Y29 109 aa13.03□□□□□ -0.32
SHMT1-210ENST00000583780 CHCHD1Q96BP2 118 aaKnown RBP13.03□□□□□ -0.32
SHMT1-210ENST00000583780 MRPL35Q9NZE8 188 aaKnown RBP13.03□□□□□ -0.32
SHMT1-210ENST00000583780 COLCA2A8K830 154 aa13.02□□□□□ -0.33
SHMT1-210ENST00000583780 C2orf82Q6UX34 121 aa13.02□□□□□ -0.33
SHMT1-210ENST00000583780 A0A0U1RQV1 116 aa13.01□□□□□ -0.33
SHMT1-210ENST00000583780 C6orf48Q9UBA6 75 aa13.01□□□□□ -0.33
SHMT1-210ENST00000583780 ATP5LO75964 103 aa13□□□□□ -0.33
SHMT1-210ENST00000583780 FAT4Q6V0I7 4981 aa12.99□□□□□ -0.33
SHMT1-210ENST00000583780 TLX1NBP0CAT3 122 aa12.99□□□□□ -0.33
SHMT1-210ENST00000583780 C6orf226Q5I0X4 101 aa12.99□□□□□ -0.33
SHMT1-210ENST00000583780 Q8IZM0 81 aa12.99□□□□□ -0.33
SHMT1-210ENST00000583780 HSBP1O75506 76 aa12.98□□□□□ -0.33
SHMT1-210ENST00000583780 CKS1BP61024 79 aa12.98□□□□□ -0.33
SHMT1-210ENST00000583780 IGLV5-45A0A087WSX0 123 aa12.97□□□□□ -0.33
SHMT1-210ENST00000583780 KRTAP9-6A0A140TA67 174 aa12.97□□□□□ -0.33
SHMT1-210ENST00000583780 SMIM1B2RUZ4 78 aa12.97□□□□□ -0.33
SHMT1-210ENST00000583780 SPINK8P0C7L1 97 aa12.97□□□□□ -0.33
SHMT1-210ENST00000583780 TRBV30A0A0K0K1B3 111 aa12.96□□□□□ -0.33
SHMT1-210ENST00000583780 IGLC3P0DOY3 106 aa12.96□□□□□ -0.33
SHMT1-210ENST00000583780 FAM19A5Q7Z5A7 132 aaPredicted RBP12.96□□□□□ -0.33
SHMT1-210ENST00000583780 FAM19A2Q8N3H0 131 aa12.96□□□□□ -0.33
SHMT1-210ENST00000583780 H3BRM9 83 aa12.94□□□□□ -0.34
SHMT1-210ENST00000583780 SERF1AO75920 110 aa12.94□□□□□ -0.34
SHMT1-210ENST00000583780 RPL13AP40429 203 aaKnown RBP12.94□□□□□ -0.34
SHMT1-210ENST00000583780 GAGE2EQ4V326 116 aa12.94□□□□□ -0.34
SHMT1-210ENST00000583780 GAGE2DQ9UEU5 116 aa12.94□□□□□ -0.34
SHMT1-210ENST00000583780 COX7B2Q8TF08 81 aa12.93□□□□□ -0.34
SHMT1-210ENST00000583780 IFI27L1Q96BM0 104 aa12.93□□□□□ -0.34
SHMT1-210ENST00000583780 ZNF22P17026 224 aaPredicted RBP12.91□□□□□ -0.34
SHMT1-210ENST00000583780 LINC00310P59036 64 aa12.91□□□□□ -0.34
SHMT1-210ENST00000583780 CHTOPQ9Y3Y2 248 aaKnown RBP12.91□□□□□ -0.34
SHMT1-210ENST00000583780 C11orf86A6NJI1 115 aa12.9□□□□□ -0.34
SHMT1-210ENST00000583780 F8VRH5 84 aa12.9□□□□□ -0.34
SHMT1-210ENST00000583780 CXCL5P42830 114 aa12.9□□□□□ -0.34
SHMT1-210ENST00000583780 NDUFC2-KCTD14E9PQ53 114 aa12.89□□□□□ -0.35
SHMT1-210ENST00000583780 M0QXV9 152 aa12.89□□□□□ -0.35
SHMT1-210ENST00000583780 TSPAN13O95857 204 aa12.89□□□□□ -0.35
SHMT1-210ENST00000583780 TMEM170BQ5T4T1 132 aa12.89□□□□□ -0.35
SHMT1-210ENST00000583780 H0Y8G0 127 aa12.88□□□□□ -0.35
SHMT1-210ENST00000583780 UBE2BP63146 152 aa12.88□□□□□ -0.35
SHMT1-210ENST00000583780 TRAV12-1A0A0B4J245 112 aa12.87□□□□□ -0.35
SHMT1-210ENST00000583780 NUPR1O60356 82 aa12.87□□□□□ -0.35
SHMT1-210ENST00000583780 C9orf129Q5T035 196 aaKnown RBP12.87□□□□□ -0.35
SHMT1-210ENST00000583780 ZNF861PO60384 105 aa12.86□□□□□ -0.35
SHMT1-210ENST00000583780 LEPROTL1O95214 131 aa12.86□□□□□ -0.35
SHMT1-210ENST00000583780 IGLV5-39A0A0G2JS06 123 aa12.84□□□□□ -0.35
SHMT1-210ENST00000583780 FABP4P15090 132 aa12.84□□□□□ -0.35
SHMT1-210ENST00000583780 HIST1H2BKO60814 126 aa12.83□□□□□ -0.36
SHMT1-210ENST00000583780 HIST1H2BJP06899 126 aa12.83□□□□□ -0.36
SHMT1-210ENST00000583780 HIST1H2BOP23527 126 aa12.83□□□□□ -0.36
SHMT1-210ENST00000583780 HIST1H2BBP33778 126 aa12.83□□□□□ -0.36
SHMT1-210ENST00000583780 HIST1H2BDP58876 126 aa12.83□□□□□ -0.36
SHMT1-210ENST00000583780 HIST1H2BCP62807 126 aa12.83□□□□□ -0.36
SHMT1-210ENST00000583780 HIST2H2BEQ16778 126 aa12.83□□□□□ -0.36
SHMT1-210ENST00000583780 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.83□□□□□ -0.36
SHMT1-210ENST00000583780 HIST1H2BHQ93079 126 aa12.83□□□□□ -0.36
SHMT1-210ENST00000583780 HIST1H2BNQ99877 126 aa12.83□□□□□ -0.36
SHMT1-210ENST00000583780 HIST1H2BMQ99879 126 aa12.83□□□□□ -0.36
SHMT1-210ENST00000583780 HSPB8Q9UJY1 196 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms