RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 CCDC141Q6ZP82 1450 aa-0.35□□□□□ -2.47
SMCHD1-209ENST00000583441 C7orf77A4D0Y5 90 aa-0.36□□□□□ -2.47
SMCHD1-209ENST00000583441 TOP2BQ02880 1626 aa-0.36□□□□□ -2.47
SMCHD1-209ENST00000583441 A0A0G2JMZ2 1700 aa-0.36□□□□□ -2.47
SMCHD1-209ENST00000583441 ATRQ13535 2644 aa-0.37□□□□□ -2.47
SMCHD1-209ENST00000583441 H3BQF6 201 aa-0.37□□□□□ -2.47
SMCHD1-209ENST00000583441 SPRR2BP35325 72 aa-0.37□□□□□ -2.47
SMCHD1-209ENST00000583441 CACFD1Q9UGQ2 172 aa-0.37□□□□□ -2.47
SMCHD1-209ENST00000583441 ABCC5O15440 1437 aa-0.38□□□□□ -2.47
SMCHD1-209ENST00000583441 KIAA0556O60303 1618 aa-0.38□□□□□ -2.47
SMCHD1-209ENST00000583441 TSC2P49815 1807 aa-0.38□□□□□ -2.47
SMCHD1-209ENST00000583441 ZANQ9Y493 2812 aa-0.38□□□□□ -2.47
SMCHD1-209ENST00000583441 A0A1B0GU69 56 aa-0.38□□□□□ -2.47
SMCHD1-209ENST00000583441 TMEM218A2RU14 115 aa-0.38□□□□□ -2.47
SMCHD1-209ENST00000583441 PMCHL1Q16048 86 aa-0.38□□□□□ -2.47
SMCHD1-209ENST00000583441 TCEAL7Q9BRU2 100 aa-0.38□□□□□ -2.47
SMCHD1-209ENST00000583441 PLEKHH2Q8IVE3 1493 aa-0.38□□□□□ -2.47
SMCHD1-209ENST00000583441 FAT2Q9NYQ8 4349 aa-0.39□□□□□ -2.47
SMCHD1-209ENST00000583441 CSPG4Q6UVK1 2322 aa-0.39□□□□□ -2.47
SMCHD1-209ENST00000583441 TRBV25-1A0A075B6N4 114 aa-0.39□□□□□ -2.47
SMCHD1-209ENST00000583441 A0A087WVE0 104 aa-0.39□□□□□ -2.47
SMCHD1-209ENST00000583441 GNGT2O14610 69 aa-0.39□□□□□ -2.47
SMCHD1-209ENST00000583441 XRN1Q8IZH2 1706 aaKnown RBP-0.39□□□□□ -2.47
SMCHD1-209ENST00000583441 BSNQ9UPA5 3926 aa-0.4□□□□□ -2.47
SMCHD1-209ENST00000583441 MPC2O95563 127 aa-0.4□□□□□ -2.47
SMCHD1-209ENST00000583441 PSMG4Q5JS54 123 aa-0.4□□□□□ -2.47
SMCHD1-209ENST00000583441 ZFYVE16Q7Z3T8 1539 aa-0.4□□□□□ -2.47
SMCHD1-209ENST00000583441 SCN7AQ01118 1682 aa-0.4□□□□□ -2.47
SMCHD1-209ENST00000583441 ALMS1Q8TCU4 4167 aa-0.41□□□□□ -2.47
SMCHD1-209ENST00000583441 A0A0G2JND7 137 aa-0.41□□□□□ -2.48
SMCHD1-209ENST00000583441 C6orf201Q7Z4U5 140 aa-0.41□□□□□ -2.48
SMCHD1-209ENST00000583441 CRIPTQ9P021 101 aa-0.41□□□□□ -2.48
SMCHD1-209ENST00000583441 SPTA1P02549 2419 aa-0.41□□□□□ -2.48
SMCHD1-209ENST00000583441 SETXQ7Z333 2677 aaKnown RBP-0.41□□□□□ -2.48
SMCHD1-209ENST00000583441 NLRP1Q9C000 1473 aa-0.41□□□□□ -2.48
SMCHD1-209ENST00000583441 EP300Q09472 2414 aaPredicted RBP-0.42□□□□□ -2.48
SMCHD1-209ENST00000583441 TRAV30A0A087WSZ9 112 aa-0.42□□□□□ -2.48
SMCHD1-209ENST00000583441 CPSF4LA6NMK7 179 aaKnown RBP-0.42□□□□□ -2.48
SMCHD1-209ENST00000583441 H0Y9P7 68 aa-0.42□□□□□ -2.48
SMCHD1-209ENST00000583441 M0R2T5 61 aa-0.42□□□□□ -2.48
SMCHD1-209ENST00000583441 KLK9Q2XQG4 91 aa-0.42□□□□□ -2.48
SMCHD1-209ENST00000583441 AP4S1Q9Y587 144 aa-0.42□□□□□ -2.48
SMCHD1-209ENST00000583441 MLH3Q9UHC1 1453 aa-0.42□□□□□ -2.48
SMCHD1-209ENST00000583441 CC2D2AQ9P2K1 1620 aa-0.42□□□□□ -2.48
SMCHD1-209ENST00000583441 SRRM2Q9UQ35 2752 aaKnown RBP-0.43□□□□□ -2.48
SMCHD1-209ENST00000583441 EDC4Q6P2E9 1401 aaKnown RBP-0.43□□□□□ -2.48
SMCHD1-209ENST00000583441 GNGT1P63211 74 aa-0.43□□□□□ -2.48
SMCHD1-209ENST00000583441 C14orf144Q96I85 54 aa-0.43□□□□□ -2.48
SMCHD1-209ENST00000583441 TRGV9Q99603 122 aa-0.43□□□□□ -2.48
SMCHD1-209ENST00000583441 APLNQ9ULZ1 77 aa-0.43□□□□□ -2.48
SMCHD1-209ENST00000583441 TENM2Q9NT68 2774 aa-0.43□□□□□ -2.48
SMCHD1-209ENST00000583441 COL4A6Q14031 1691 aa-0.43□□□□□ -2.48
SMCHD1-209ENST00000583441 TOPAZ1Q8N9V7 1692 aa-0.43□□□□□ -2.48
SMCHD1-209ENST00000583441 PRDM15P57071 1507 aaPredicted RBP-0.43□□□□□ -2.48
SMCHD1-209ENST00000583441 CHD8Q9HCK8 2581 aa-0.44□□□□□ -2.48
SMCHD1-209ENST00000583441 NUP188Q5SRE5 1749 aa-0.44□□□□□ -2.48
SMCHD1-209ENST00000583441 H7BZZ5 65 aa-0.44□□□□□ -2.48
SMCHD1-209ENST00000583441 I3L3M4 83 aa-0.44□□□□□ -2.48
SMCHD1-209ENST00000583441 ATOX1O00244 68 aa-0.44□□□□□ -2.48
SMCHD1-209ENST00000583441 UQCRHP07919 91 aa-0.44□□□□□ -2.48
SMCHD1-209ENST00000583441 LINC00032P0C843 101 aa-0.44□□□□□ -2.48
SMCHD1-209ENST00000583441 MAP1BP46821 2468 aaKnown RBP-0.44□□□□□ -2.48
SMCHD1-209ENST00000583441 PMCHL2Q9BQD1 86 aa-0.45□□□□□ -2.48
SMCHD1-209ENST00000583441 COL6A3P12111 3177 aa-0.45□□□□□ -2.48
SMCHD1-209ENST00000583441 APC2O95996 2303 aa-0.46□□□□□ -2.48
SMCHD1-209ENST00000583441 IQSEC2Q5JU85 1478 aa-0.46□□□□□ -2.48
SMCHD1-209ENST00000583441 ARMS2P0C7Q2 107 aa-0.46□□□□□ -2.48
SMCHD1-209ENST00000583441 S100A10P60903 97 aa-0.46□□□□□ -2.48
SMCHD1-209ENST00000583441 DEFB107AQ8IZN7 70 aa-0.46□□□□□ -2.48
SMCHD1-209ENST00000583441 SERP2Q8N6R1 65 aa-0.46□□□□□ -2.48
SMCHD1-209ENST00000583441 CHD1O14646 1710 aa-0.47□□□□□ -2.48
SMCHD1-209ENST00000583441 WNK1Q9H4A3 2382 aa-0.47□□□□□ -2.48
SMCHD1-209ENST00000583441 ABCC2Q92887 1545 aa-0.47□□□□□ -2.48
SMCHD1-209ENST00000583441 NEBP20929 6669 aa-0.47□□□□□ -2.48
SMCHD1-209ENST00000583441 ASIPP42127 132 aa-0.47□□□□□ -2.48
SMCHD1-209ENST00000583441 HMGN3Q15651 99 aa-0.47□□□□□ -2.48
SMCHD1-209ENST00000583441 ACBD7Q8N6N7 88 aa-0.47□□□□□ -2.48
SMCHD1-209ENST00000583441 URB1O60287 2271 aaKnown RBP-0.47□□□□□ -2.48
SMCHD1-209ENST00000583441 HECTD4Q9Y4D8 3996 aa-0.47□□□□□ -2.48
SMCHD1-209ENST00000583441 MT-ATP8P03928 68 aa-0.48□□□□□ -2.49
SMCHD1-209ENST00000583441 RBP2P50120 134 aa-0.48□□□□□ -2.49
SMCHD1-209ENST00000583441 ALKAL2Q6UX46 152 aa-0.48□□□□□ -2.49
SMCHD1-209ENST00000583441 NKTRP30414 1462 aaKnown RBP-0.48□□□□□ -2.49
SMCHD1-209ENST00000583441 RAPGEF2Q9Y4G8 1499 aa-0.48□□□□□ -2.49
SMCHD1-209ENST00000583441 FLNBO75369 2602 aaKnown RBP-0.49□□□□□ -2.49
SMCHD1-209ENST00000583441 KMT2CQ8NEZ4 4911 aaKnown RBP-0.49□□□□□ -2.49
SMCHD1-209ENST00000583441 DPY30Q9C005 99 aa-0.49□□□□□ -2.49
SMCHD1-209ENST00000583441 ANKRD36BQ8N2N9 1353 aa-0.49□□□□□ -2.49
SMCHD1-209ENST00000583441 PDCD11Q14690 1871 aaKnown RBP-0.5□□□□□ -2.49
SMCHD1-209ENST00000583441 PCLOQ9Y6V0 5065 aa-0.5□□□□□ -2.49
SMCHD1-209ENST00000583441 ATP6V1G2-DDX39BF2Z307 99 aa-0.5□□□□□ -2.49
SMCHD1-209ENST00000583441 KRTAP19-7Q3SYF9 63 aa-0.5□□□□□ -2.49
SMCHD1-209ENST00000583441 PRKDCP78527 4128 aaKnown RBP-0.5□□□□□ -2.49
SMCHD1-209ENST00000583441 TEX14Q8IWB6 1497 aa-0.5□□□□□ -2.49
SMCHD1-209ENST00000583441 ABCA3Q99758 1704 aa-0.5□□□□□ -2.49
SMCHD1-209ENST00000583441 PDZD2O15018 2839 aa-0.51□□□□□ -2.49
SMCHD1-209ENST00000583441 DNAJC13O75165 2243 aa-0.51□□□□□ -2.49
SMCHD1-209ENST00000583441 ACANP16112 2415 aa-0.51□□□□□ -2.49
SMCHD1-209ENST00000583441 FYCO1Q9BQS8 1478 aa-0.51□□□□□ -2.49
SMCHD1-209ENST00000583441 MUC2Q02817 5179 aa-0.52□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms