RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 BLCAPP62952 87 aa2.56□□□□□ -2
SMCHD1-208ENST00000583344 ZNF56Q15929 161 aa2.56□□□□□ -2
SMCHD1-208ENST00000583344 C2orf82Q6UX34 121 aa2.56□□□□□ -2
SMCHD1-208ENST00000583344 COPS9Q8WXC6 57 aa2.56□□□□□ -2
SMCHD1-208ENST00000583344 CHCHD7Q9BUK0 85 aa2.56□□□□□ -2
SMCHD1-208ENST00000583344 TMEM126AQ9H061 195 aa2.56□□□□□ -2
SMCHD1-208ENST00000583344 NDUFA12Q9UI09 145 aa2.56□□□□□ -2
SMCHD1-208ENST00000583344 UBE2D4Q9Y2X8 147 aa2.56□□□□□ -2
SMCHD1-208ENST00000583344 DOPEY2Q9Y3R5 2298 aa2.56□□□□□ -2
SMCHD1-208ENST00000583344 PLCE1Q9P212 2302 aa2.56□□□□□ -2
SMCHD1-208ENST00000583344 FBN2P35556 2912 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 H3BUX3 64 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 IGHV3-11P01762 117 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 IGHV3-53P01767 116 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 TRACP01848 142 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 ATP5G1P05496 136 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 CD28P10747 220 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 CXCL5P42830 114 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 PRR3P79522 188 aaKnown RBP2.55□□□□□ -2
SMCHD1-208ENST00000583344 CIRBPQ14011 172 aaKnown RBP2.55□□□□□ -2
SMCHD1-208ENST00000583344 DOPEY1Q5JWR5 2465 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 CASC10Q5T4H9 136 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 FAM74A4Q5TZK3 123 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 FAM19A1Q7Z5A9 133 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 LINC00643Q86TS7 51 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 C10orf105Q8TEF2 133 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 C7orf33Q8WU49 177 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 TMEM101Q96IK0 257 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 ABCA12Q86UK0 2595 aa2.55□□□□□ -2
SMCHD1-208ENST00000583344 SPTA1P02549 2419 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 SVILO95425 2214 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 ARHGAP32A7KAX9 2087 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 FLNCQ14315 2725 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 TRAV12-2A0A075B6T6 113 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 TRAV8-3A0A0A6YYJ7 113 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 IGHV3OR16-9A0A0B4J2B5 98 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 CCDC179H3BU77 68 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 PANO1I0J062 215 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 COX7A2LO14548 114 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 HERVK_113P63121 156 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 CD164Q04900 197 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 LY6EQ16553 131 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 SPINK13Q1W4C9 94 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 FAM222AQ5U5X8 452 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 BRD3OSQ6XYD6 125 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 C5orf38Q86SI9 138 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 LINC00308Q8TCZ7 52 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 SS18L2Q9UHA2 77 aa2.54□□□□□ -2
SMCHD1-208ENST00000583344 PTPRQQ9UMZ3 2332 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 ABCA1O95477 2261 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 FBN3Q75N90 2809 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 IGKV3-7A0A075B6H7 116 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 IGHV3-64A0A075B6Q5 118 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 B4DSR2 109 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 H7C2G1 150 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 J3QLI3 93 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 MSMBP08118 114 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 RPL28P46779 137 aaKnown RBP2.53□□□□□ -2
SMCHD1-208ENST00000583344 RPS28P62857 69 aaKnown RBP2.53□□□□□ -2
SMCHD1-208ENST00000583344 COX6A2Q02221 97 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 RBMY1FQ15415 496 aaKnown RBP2.53□□□□□ -2
SMCHD1-208ENST00000583344 MEIG1Q5JSS6 88 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 DAND5Q8N907 189 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 C11orf72Q8NBR9 251 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 DEFB104AQ8WTQ1 72 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 CLEC2BQ92478 149 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 ZNF625Q96I27 306 aaPredicted RBP2.53□□□□□ -2
SMCHD1-208ENST00000583344 LINC01587Q99440 93 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 CDKN2A-AS1Q9UH64 79 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 C22orf24Q9Y442 160 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 ATMQ13315 3056 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 COL6A6A6NMZ7 2263 aa2.53□□□□□ -2
SMCHD1-208ENST00000583344 SPTAN1Q13813 2472 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 BSNQ9UPA5 3926 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 PRRC2CQ9Y520 2896 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 ITPR3Q14573 2671 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 COL12A1Q99715 3063 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 SMIM26A0A096LP01 95 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 TRBV10-1A0A0K0K1A3 114 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 F5H768 121 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 H0YGX0 51 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 UQCRQO14949 82 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 BAALC-AS2P0C853 105 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 KRTAP10-10P60014 251 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 HIST1H4AP62805 103 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 DAZ2Q13117 558 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 CEMP1Q6PRD7 247 aaPredicted RBP2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 DAZ4Q86SG3 579 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 Q8N2B8 174 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 C3orf22Q8N5N4 141 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 LINC00526Q96FQ7 95 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 OBSCN-AS1Q96MR7 158 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 DAZ3Q9NR90 486 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 C2CD3Q4AC94 2353 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 MGAQ8IWI9 3026 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 DCHS2Q6V1P9 2916 aa2.52□□□□□ -2.01
SMCHD1-208ENST00000583344 RELNP78509 3460 aa2.51□□□□□ -2.01
SMCHD1-208ENST00000583344 CREBBPQ92793 2442 aa2.51□□□□□ -2.01
SMCHD1-208ENST00000583344 TACC2O95359 2948 aa2.51□□□□□ -2.01
SMCHD1-208ENST00000583344 NBPF19A0A087WUL8 3843 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 151 ms