RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 IGKV3D-7A0A0C4DH55 119 aa8.5□□□□□ -1.05
SHMT1-208ENST00000582352 IGLV1-51P01701 117 aa8.5□□□□□ -1.05
SHMT1-208ENST00000582352 DEFB130BP0DP73 79 aa8.5□□□□□ -1.05
SHMT1-208ENST00000582352 DEFB130AP0DP74 79 aa8.5□□□□□ -1.05
SHMT1-208ENST00000582352 ESM1Q9NQ30 184 aa8.5□□□□□ -1.05
SHMT1-208ENST00000582352 LINC00846Q9NV44 126 aa8.5□□□□□ -1.05
SHMT1-208ENST00000582352 C19orf73Q9NVV2 129 aa8.5□□□□□ -1.05
SHMT1-208ENST00000582352 SS18Q15532 418 aa8.5□□□□□ -1.05
SHMT1-208ENST00000582352 ZNF469Q96JG9 3925 aaPredicted RBP8.49□□□□□ -1.05
SHMT1-208ENST00000582352 Q8IZM0 81 aa8.49□□□□□ -1.05
SHMT1-208ENST00000582352 ITPR3Q14573 2671 aa8.49□□□□□ -1.05
SHMT1-208ENST00000582352 RPL18AQ02543 176 aaKnown RBP8.49□□□□□ -1.05
SHMT1-208ENST00000582352 KRTAP1-3Q8IUG1 177 aa8.49□□□□□ -1.05
SHMT1-208ENST00000582352 UBR5O95071 2799 aaPredicted RBP8.48□□□□□ -1.05
SHMT1-208ENST00000582352 NBPF19A0A087WUL8 3843 aa8.48□□□□□ -1.05
SHMT1-208ENST00000582352 GYPEP15421 78 aa8.48□□□□□ -1.05
SHMT1-208ENST00000582352 CLPSL2Q6UWE3 100 aa8.48□□□□□ -1.05
SHMT1-208ENST00000582352 C2orf48Q96LS8 159 aa8.48□□□□□ -1.05
SHMT1-208ENST00000582352 LINC01006Q8NI28 216 aa8.47□□□□□ -1.05
SHMT1-208ENST00000582352 CCDC168Q8NDH2 2452 aa8.46□□□□□ -1.05
SHMT1-208ENST00000582352 A0A1B0GX51 115 aa8.46□□□□□ -1.05
SHMT1-208ENST00000582352 CRYGAP11844 174 aa8.46□□□□□ -1.05
SHMT1-208ENST00000582352 A0A1B0GUV1 79 aa8.46□□□□□ -1.06
SHMT1-208ENST00000582352 KIR2DL5BQ8NHK3 375 aa8.45□□□□□ -1.06
SHMT1-208ENST00000582352 A0A087WVE0 104 aa8.45□□□□□ -1.06
SHMT1-208ENST00000582352 WFDC11Q8NEX6 87 aa8.45□□□□□ -1.06
SHMT1-208ENST00000582352 JMJD7-PLA2G4BH0Y9G9 81 aa8.44□□□□□ -1.06
SHMT1-208ENST00000582352 CCKP06307 115 aa8.44□□□□□ -1.06
SHMT1-208ENST00000582352 FLNAP21333 2647 aaKnown RBP8.44□□□□□ -1.06
SHMT1-208ENST00000582352 APCP25054 2843 aa8.44□□□□□ -1.06
SHMT1-208ENST00000582352 CFAP161Q6P656 301 aa8.44□□□□□ -1.06
SHMT1-208ENST00000582352 LINC01561Q8N1V8 128 aa8.44□□□□□ -1.06
SHMT1-208ENST00000582352 hADV29S1A0JD25 119 aa8.44□□□□□ -1.06
SHMT1-208ENST00000582352 Q8N814 137 aa8.44□□□□□ -1.06
SHMT1-208ENST00000582352 LINC00167Q96N53 147 aa8.44□□□□□ -1.06
SHMT1-208ENST00000582352 A0A096LPF7 62 aa8.43□□□□□ -1.06
SHMT1-208ENST00000582352 PRR3P79522 188 aaKnown RBP8.43□□□□□ -1.06
SHMT1-208ENST00000582352 S100A7L2Q5SY68 101 aa8.43□□□□□ -1.06
SHMT1-208ENST00000582352 TMEM256-PLSCR3K7ERE1 68 aa8.43□□□□□ -1.06
SHMT1-208ENST00000582352 SERP2Q8N6R1 65 aa8.43□□□□□ -1.06
SHMT1-208ENST00000582352 C16orf95Q9H693 158 aa8.43□□□□□ -1.06
SHMT1-208ENST00000582352 USP17L23D6RBM5 183 aa8.42□□□□□ -1.06
SHMT1-208ENST00000582352 NDUFC2O95298 119 aa8.42□□□□□ -1.06
SHMT1-208ENST00000582352 NANOS2P60321 138 aaKnown RBP8.42□□□□□ -1.06
SHMT1-208ENST00000582352 PRO0255Q9UI72 69 aa8.42□□□□□ -1.06
SHMT1-208ENST00000582352 J3KT08 172 aa8.42□□□□□ -1.06
SHMT1-208ENST00000582352 RNASE1P07998 156 aaKnown RBP8.42□□□□□ -1.06
SHMT1-208ENST00000582352 COX17Q14061 63 aa8.42□□□□□ -1.06
SHMT1-208ENST00000582352 LINC00612Q8N6U2 182 aa8.42□□□□□ -1.06
SHMT1-208ENST00000582352 BBC3Q96PG8 261 aaPredicted RBP8.42□□□□□ -1.06
SHMT1-208ENST00000582352 USP24Q9UPU5 2620 aa8.42□□□□□ -1.06
SHMT1-208ENST00000582352 FN1P02751 2386 aaKnown RBP8.41□□□□□ -1.06
SHMT1-208ENST00000582352 LINC00269Q8N2A0 174 aa8.41□□□□□ -1.06
SHMT1-208ENST00000582352 ATP5EP2Q5VTU8 51 aa8.4□□□□□ -1.06
SHMT1-208ENST00000582352 CD164L2Q6UWJ8 174 aa8.4□□□□□ -1.06
SHMT1-208ENST00000582352 CHCHD10Q8WYQ3 142 aaPredicted RBP8.39□□□□□ -1.07
SHMT1-208ENST00000582352 IGLV10-54A0A075B6I4 117 aa8.39□□□□□ -1.07
SHMT1-208ENST00000582352 KIAA0087Q14695 138 aa8.39□□□□□ -1.07
SHMT1-208ENST00000582352 ZNF843Q8N446 348 aa8.39□□□□□ -1.07
SHMT1-208ENST00000582352 LOC107984640A0A0U1RRK4 108 aa8.39□□□□□ -1.07
SHMT1-208ENST00000582352 ANGP03950 147 aaKnown RBP8.39□□□□□ -1.07
SHMT1-208ENST00000582352 C6orf99Q4VX62 202 aa8.39□□□□□ -1.07
SHMT1-208ENST00000582352 GCN1Q92616 2671 aaKnown RBP8.38□□□□□ -1.07
SHMT1-208ENST00000582352 CYSTM1Q9H1C7 97 aa8.38□□□□□ -1.07
SHMT1-208ENST00000582352 C9orf116Q5BN46 136 aaPredicted RBP8.38□□□□□ -1.07
SHMT1-208ENST00000582352 MTORP42345 2549 aa8.37□□□□□ -1.07
SHMT1-208ENST00000582352 TMEM258P61165 79 aa8.37□□□□□ -1.07
SHMT1-208ENST00000582352 X6R8D5 127 aa8.37□□□□□ -1.07
SHMT1-208ENST00000582352 IGHV4-28A0A0C4DH34 117 aa8.37□□□□□ -1.07
SHMT1-208ENST00000582352 REG3AQ06141 175 aa8.37□□□□□ -1.07
SHMT1-208ENST00000582352 UBL5Q9BZL1 73 aa8.37□□□□□ -1.07
SHMT1-208ENST00000582352 SMIM9A6NGZ8 99 aa8.36□□□□□ -1.07
SHMT1-208ENST00000582352 UPK3BQ9BT76 320 aa8.36□□□□□ -1.07
SHMT1-208ENST00000582352 HILS1P60008 231 aa8.35□□□□□ -1.07
SHMT1-208ENST00000582352 Q8N3U1 123 aa8.35□□□□□ -1.07
SHMT1-208ENST00000582352 WFDC9Q8NEX5 89 aa8.35□□□□□ -1.07
SHMT1-208ENST00000582352 LYRM9A8MSI8 78 aa8.34□□□□□ -1.07
SHMT1-208ENST00000582352 GHRHP01286 108 aa8.34□□□□□ -1.07
SHMT1-208ENST00000582352 ENHOQ6UWT2 76 aa8.34□□□□□ -1.07
SHMT1-208ENST00000582352 LINC00575Q6W349 94 aa8.34□□□□□ -1.07
SHMT1-208ENST00000582352 TRAV23DV6A0A075B6W5 121 aa8.33□□□□□ -1.08
SHMT1-208ENST00000582352 Q8NDZ9 215 aa8.33□□□□□ -1.08
SHMT1-208ENST00000582352 NBEAL2Q6ZNJ1 2754 aa8.33□□□□□ -1.08
SHMT1-208ENST00000582352 ACANP16112 2415 aa8.33□□□□□ -1.08
SHMT1-208ENST00000582352 RPS28P62857 69 aaKnown RBP8.33□□□□□ -1.08
SHMT1-208ENST00000582352 RBM3P98179 157 aaKnown RBP8.33□□□□□ -1.08
SHMT1-208ENST00000582352 KRTAP1-1Q07627 177 aa8.33□□□□□ -1.08
SHMT1-208ENST00000582352 SPAG11BQ08648 103 aa8.33□□□□□ -1.08
SHMT1-208ENST00000582352 FAM19A1Q7Z5A9 133 aa8.33□□□□□ -1.08
SHMT1-208ENST00000582352 ZNF561-AS1K7EIQ3 104 aa8.32□□□□□ -1.08
SHMT1-208ENST00000582352 FAM19A5Q7Z5A7 132 aaPredicted RBP8.32□□□□□ -1.08
SHMT1-208ENST00000582352 LAMTOR3Q9UHA4 124 aa8.32□□□□□ -1.08
SHMT1-208ENST00000582352 DEFB4AO15263 64 aa8.32□□□□□ -1.08
SHMT1-208ENST00000582352 LYPD5Q6UWN5 251 aa8.32□□□□□ -1.08
SHMT1-208ENST00000582352 TRBV10-3A0A0K0K1G6 114 aa8.31□□□□□ -1.08
SHMT1-208ENST00000582352 MUC7Q8TAX7 377 aa8.31□□□□□ -1.08
SHMT1-208ENST00000582352 DAD1P61803 113 aa8.3□□□□□ -1.08
SHMT1-208ENST00000582352 DEFB135Q30KP9 77 aa8.3□□□□□ -1.08
SHMT1-208ENST00000582352 UNQ6190/PRO20217Q6UXQ8 127 aa8.3□□□□□ -1.08
SHMT1-208ENST00000582352 Q6ZQT0 140 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 218.1 ms