RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 CCL18P55774 89 aa6.88□□□□□ -1.31
SS18-207ENST00000577636 TSPEAR-AS2P59090 65 aa6.88□□□□□ -1.31
SS18-207ENST00000577636 SFTA2Q6UW10 78 aa6.88□□□□□ -1.31
SS18-207ENST00000577636 CLPSL2Q6UWE3 100 aa6.88□□□□□ -1.31
SS18-207ENST00000577636 A0A087WZ39 114 aa6.87□□□□□ -1.31
SS18-207ENST00000577636 EPM2AB3EWF7 344 aa6.87□□□□□ -1.31
SS18-207ENST00000577636 PRSS2P07478 247 aa6.87□□□□□ -1.31
SS18-207ENST00000577636 HERV-K104P63124 156 aa6.87□□□□□ -1.31
SS18-207ENST00000577636 CD164L2Q6UWJ8 174 aa6.87□□□□□ -1.31
SS18-207ENST00000577636 CEND1Q8N111 149 aa6.87□□□□□ -1.31
SS18-207ENST00000577636 LINC01561Q8N1V8 128 aa6.87□□□□□ -1.31
SS18-207ENST00000577636 COX7B2Q8TF08 81 aa6.87□□□□□ -1.31
SS18-207ENST00000577636 COPS9Q8WXC6 57 aa6.87□□□□□ -1.31
SS18-207ENST00000577636 SPANXB1Q9NS25 103 aaPredicted RBP6.87□□□□□ -1.31
SS18-207ENST00000577636 KLK12Q9UKR0 248 aa6.87□□□□□ -1.31
SS18-207ENST00000577636 TRAV8-4A0A0B4J246 113 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 IGHV3OR16-9A0A0B4J2B5 98 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 COX7A2LO14548 114 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 NDUFA1O15239 70 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 APOMO95445 188 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 IGHV3-30P01768 117 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 IGHV3-33P01772 117 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 INAFM2P0DMQ5 153 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 IGHV3-30-5P0DP03 117 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 KRTAP10-2P60368 255 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 ESRGQ1W209 222 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 CHCHD10Q8WYQ3 142 aaPredicted RBP6.86□□□□□ -1.31
SS18-207ENST00000577636 TM2D2Q9BX73 214 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 TOMM7Q9P0U1 55 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 LINC00588Q9Y4M8 146 aa6.86□□□□□ -1.31
SS18-207ENST00000577636 A0A0J9YXY3 114 aa6.85□□□□□ -1.31
SS18-207ENST00000577636 SMIM13P0DJ93 91 aa6.85□□□□□ -1.31
SS18-207ENST00000577636 MIAQ16674 131 aa6.85□□□□□ -1.31
SS18-207ENST00000577636 C6orf226Q5I0X4 101 aa6.85□□□□□ -1.31
SS18-207ENST00000577636 Q6ZVH6 145 aa6.85□□□□□ -1.31
SS18-207ENST00000577636 C5orf38Q86SI9 138 aa6.85□□□□□ -1.31
SS18-207ENST00000577636 WFDC10BQ8IUB3 73 aa6.85□□□□□ -1.31
SS18-207ENST00000577636 UBE2WQ96B02 151 aa6.85□□□□□ -1.31
SS18-207ENST00000577636 Q9H8V8 135 aa6.85□□□□□ -1.31
SS18-207ENST00000577636 DNAH5Q8TE73 4624 aa6.84□□□□□ -1.31
SS18-207ENST00000577636 IGLV10-54A0A075B6I4 117 aa6.84□□□□□ -1.31
SS18-207ENST00000577636 TIMM17BO60830 172 aa6.84□□□□□ -1.31
SS18-207ENST00000577636 FUSP35637 526 aaKnown RBP eCLIP6.84□□□□□ -1.31
SS18-207ENST00000577636 LINC01556Q5JQF7 62 aa6.84□□□□□ -1.31
SS18-207ENST00000577636 MEIG1Q5JSS6 88 aa6.84□□□□□ -1.31
SS18-207ENST00000577636 CFAP161Q6P656 301 aa6.84□□□□□ -1.31
SS18-207ENST00000577636 PRR34Q9NV39 138 aa6.84□□□□□ -1.31
SS18-207ENST00000577636 CKS1BP61024 79 aa6.83□□□□□ -1.32
SS18-207ENST00000577636 RPL24P83731 157 aaKnown RBP6.83□□□□□ -1.32
SS18-207ENST00000577636 C10orf126Q8N4M7 172 aa6.83□□□□□ -1.32
SS18-207ENST00000577636 HERC1Q15751 4861 aa6.83□□□□□ -1.32
SS18-207ENST00000577636 APOBP04114 4563 aaKnown RBP6.83□□□□□ -1.32
SS18-207ENST00000577636 GAGE12HA6NDE8 117 aa6.82□□□□□ -1.32
SS18-207ENST00000577636 IFITM1P13164 125 aa6.82□□□□□ -1.32
SS18-207ENST00000577636 CXCL5P42830 114 aa6.82□□□□□ -1.32
SS18-207ENST00000577636 Q8IZM0 81 aa6.82□□□□□ -1.32
SS18-207ENST00000577636 Q8N3U1 123 aa6.82□□□□□ -1.32
SS18-207ENST00000577636 NHP2Q9NX24 153 aaKnown RBP6.82□□□□□ -1.32
SS18-207ENST00000577636 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.81□□□□□ -1.32
SS18-207ENST00000577636 A0A1B0GV90 55 aa6.81□□□□□ -1.32
SS18-207ENST00000577636 DNAH10OSP0CZ25 163 aa6.81□□□□□ -1.32
SS18-207ENST00000577636 FXYD2P54710 66 aa6.81□□□□□ -1.32
SS18-207ENST00000577636 ENHOQ6UWT2 76 aa6.81□□□□□ -1.32
SS18-207ENST00000577636 RMI2Q96E14 147 aa6.81□□□□□ -1.32
SS18-207ENST00000577636 C1orf43Q9BWL3 253 aa6.81□□□□□ -1.32
SS18-207ENST00000577636 SPANXDQ9BXN6 97 aa6.81□□□□□ -1.32
SS18-207ENST00000577636 KRTAP1-5Q9BYS1 174 aa6.81□□□□□ -1.32
SS18-207ENST00000577636 SPANXCQ9NY87 97 aa6.81□□□□□ -1.32
SS18-207ENST00000577636 K7EP13 123 aa6.8□□□□□ -1.32
SS18-207ENST00000577636 TTC32Q5I0X7 151 aa6.8□□□□□ -1.32
SS18-207ENST00000577636 ZNF625Q96I27 306 aaPredicted RBP6.8□□□□□ -1.32
SS18-207ENST00000577636 FOXI1Q12951 378 aa6.79□□□□□ -1.32
SS18-207ENST00000577636 MUSTN1Q8IVN3 82 aa6.79□□□□□ -1.32
SS18-207ENST00000577636 RAB37Q96AX2 223 aa6.79□□□□□ -1.32
SS18-207ENST00000577636 UPK3BQ9BT76 320 aa6.79□□□□□ -1.32
SS18-207ENST00000577636 COX11Q9Y6N1 276 aa6.79□□□□□ -1.32
SS18-207ENST00000577636 IBA57-AS1B1ANH7 110 aa6.78□□□□□ -1.32
SS18-207ENST00000577636 TAX1BP3O14907 124 aa6.78□□□□□ -1.32
SS18-207ENST00000577636 LINC00158P58513 81 aa6.78□□□□□ -1.32
SS18-207ENST00000577636 Q5VSD8 79 aa6.78□□□□□ -1.32
SS18-207ENST00000577636 IGKV2D-24A0A075B6R9 120 aa6.77□□□□□ -1.33
SS18-207ENST00000577636 C9orf118A6NHY6 69 aa6.77□□□□□ -1.33
SS18-207ENST00000577636 SMR3BP02814 79 aaPredicted RBP6.77□□□□□ -1.33
SS18-207ENST00000577636 XGP55808 180 aa6.77□□□□□ -1.33
SS18-207ENST00000577636 SPAG11BQ08648 103 aa6.77□□□□□ -1.33
SS18-207ENST00000577636 VAMP3Q15836 100 aa6.77□□□□□ -1.33
SS18-207ENST00000577636 LITAFQ99732 161 aa6.77□□□□□ -1.33
SS18-207ENST00000577636 PGPEP1Q9NXJ5 209 aa6.77□□□□□ -1.33
SS18-207ENST00000577636 A0A0U1RRA0 63 aa6.76□□□□□ -1.33
SS18-207ENST00000577636 A0A1B0GWB2 263 aa6.76□□□□□ -1.33
SS18-207ENST00000577636 A4D1N5 150 aa6.76□□□□□ -1.33
SS18-207ENST00000577636 ZNF561-AS1K7EIQ3 104 aa6.76□□□□□ -1.33
SS18-207ENST00000577636 K7ERJ3 54 aa6.76□□□□□ -1.33
SS18-207ENST00000577636 ADAMTSL4-AS1Q5T5F5 129 aa6.76□□□□□ -1.33
SS18-207ENST00000577636 H3BUT2 72 aa6.75□□□□□ -1.33
SS18-207ENST00000577636 FABP2P12104 132 aa6.75□□□□□ -1.33
SS18-207ENST00000577636 NPC2P61916 151 aa6.75□□□□□ -1.33
SS18-207ENST00000577636 COX17Q14061 63 aa6.75□□□□□ -1.33
SS18-207ENST00000577636 LYRM7Q5U5X0 104 aa6.75□□□□□ -1.33
SS18-207ENST00000577636 LINC00308Q8TCZ7 52 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms