RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 C8orf17Q9NRJ1 99 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 V9GYV3 84 aa4.71□□□□□ -1.66
VPS53-217ENST00000575100 H3BMG7 143 aa4.7□□□□□ -1.66
VPS53-217ENST00000575100 SH2D1AO60880 128 aa4.7□□□□□ -1.66
VPS53-217ENST00000575100 RNASE4P34096 147 aaKnown RBP4.7□□□□□ -1.66
VPS53-217ENST00000575100 SH2D6Q7Z4S9 175 aa4.7□□□□□ -1.66
VPS53-217ENST00000575100 TMSB15BA0A087X1C1 80 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 TRAV12-3A0A0B4J271 114 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 IGKV3D-20A0A0C4DH25 116 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 LCE6AA0A183 80 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 CXCL5P42830 114 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 C20orf203Q8NBC4 194 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 EPPK1P58107 5090 aaKnown RBP4.69□□□□□ -1.66
VPS53-217ENST00000575100 H3BT86 120 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 ZNF324O75467 553 aaPredicted RBP4.69□□□□□ -1.66
VPS53-217ENST00000575100 COX7CP15954 63 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 LGALS9BQ3B8N2 356 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 PPDPFLQ8WWR9 84 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 KRTAP9-8Q9BYQ0 159 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 LENEPQ9Y5L5 61 aa4.69□□□□□ -1.66
VPS53-217ENST00000575100 TENM2Q9NT68 2774 aa4.68□□□□□ -1.66
VPS53-217ENST00000575100 IGHV1-58A0A0C4DH39 117 aa4.68□□□□□ -1.66
VPS53-217ENST00000575100 SYS1-DBNDD2H3BUS1 97 aa4.68□□□□□ -1.66
VPS53-217ENST00000575100 ZNF73O43830 326 aaPredicted RBP4.68□□□□□ -1.66
VPS53-217ENST00000575100 LCA10Q71F78 164 aa4.68□□□□□ -1.66
VPS53-217ENST00000575100 SCXQ7RTU7 201 aa4.68□□□□□ -1.66
VPS53-217ENST00000575100 SPATA12Q7Z6I5 190 aa4.68□□□□□ -1.66
VPS53-217ENST00000575100 ORMDL3Q8N138 153 aa4.68□□□□□ -1.66
VPS53-217ENST00000575100 ODF3Q96PU9 254 aa4.68□□□□□ -1.66
VPS53-217ENST00000575100 PMCHL2Q9BQD1 86 aa4.68□□□□□ -1.66
VPS53-217ENST00000575100 OSTCQ9NRP0 149 aa4.68□□□□□ -1.66
VPS53-217ENST00000575100 TP53TG3Q9ULZ0 132 aa4.68□□□□□ -1.66
VPS53-217ENST00000575100 IGLV1-50A0A075B6I6 118 aa4.67□□□□□ -1.66
VPS53-217ENST00000575100 A8MWL6 223 aa4.67□□□□□ -1.66
VPS53-217ENST00000575100 Q8N377 158 aa4.67□□□□□ -1.66
VPS53-217ENST00000575100 DSCR8Q96T75 97 aa4.67□□□□□ -1.66
VPS53-217ENST00000575100 RPP21Q9H633 154 aaKnown RBP4.67□□□□□ -1.66
VPS53-217ENST00000575100 SERP1Q9Y6X1 66 aa4.67□□□□□ -1.66
VPS53-217ENST00000575100 UBE2L6O14933 153 aa4.67□□□□□ -1.66
VPS53-217ENST00000575100 GNRH2O43555 120 aa4.67□□□□□ -1.66
VPS53-217ENST00000575100 KRTAP5-3Q6L8H2 238 aa4.67□□□□□ -1.66
VPS53-217ENST00000575100 TEN1Q86WV5 123 aa4.67□□□□□ -1.66
VPS53-217ENST00000575100 TRAV21A0A0B4J279 112 aa4.66□□□□□ -1.66
VPS53-217ENST00000575100 SMIM27A0A1W2PRY6 76 aa4.66□□□□□ -1.66
VPS53-217ENST00000575100 M0R378 163 aa4.66□□□□□ -1.66
VPS53-217ENST00000575100 SPINK4O60575 86 aa4.66□□□□□ -1.66
VPS53-217ENST00000575100 HTN1P15515 57 aa4.66□□□□□ -1.66
VPS53-217ENST00000575100 CMC4P56277 68 aaPredicted RBP4.66□□□□□ -1.66
VPS53-217ENST00000575100 SBSPONQ8IVN8 264 aa4.66□□□□□ -1.66
VPS53-217ENST00000575100 IL36BQ9NZH7 164 aa4.66□□□□□ -1.66
VPS53-217ENST00000575100 PRO0461Q9UI25 63 aa4.66□□□□□ -1.66
VPS53-217ENST00000575100 HHLA3Q9XRX5 114 aa4.66□□□□□ -1.66
VPS53-217ENST00000575100 HIGD1CA8MV81 97 aa4.65□□□□□ -1.66
VPS53-217ENST00000575100 RNASE13Q5GAN3 156 aaKnown RBP4.65□□□□□ -1.66
VPS53-217ENST00000575100 TSKUQ8WUA8 353 aa4.65□□□□□ -1.66
VPS53-217ENST00000575100 SCRT2Q9NQ03 307 aa4.65□□□□□ -1.66
VPS53-217ENST00000575100 RNASE3P12724 160 aaKnown RBP4.65□□□□□ -1.67
VPS53-217ENST00000575100 COPS9Q8WXC6 57 aa4.65□□□□□ -1.67
VPS53-217ENST00000575100 LYSTQ99698 3801 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 TRBV7-7A0A0K0K1E9 115 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 TCL1BO95988 128 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 INSP01308 110 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 ARMS2P0C7Q2 107 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 TMEM256Q8N2U0 113 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 LITAFQ99732 161 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 DPH3P1Q9H4G8 78 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 H3BVH4 76 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 DEFB135Q30KP9 77 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 LINC01545Q5VT33 79 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 LYZL1Q6UWQ5 148 aa4.64□□□□□ -1.67
VPS53-217ENST00000575100 TIMM8BQ9Y5J9 83 aaPredicted RBP4.64□□□□□ -1.67
VPS53-217ENST00000575100 STARD9Q9P2P6 4700 aa4.63□□□□□ -1.67
VPS53-217ENST00000575100 LGALS3P17931 250 aaKnown RBP4.63□□□□□ -1.67
VPS53-217ENST00000575100 KRTDAPP60985 99 aa4.63□□□□□ -1.67
VPS53-217ENST00000575100 NPC2P61916 151 aa4.63□□□□□ -1.67
VPS53-217ENST00000575100 LGALS9CQ6DKI2 356 aa4.63□□□□□ -1.67
VPS53-217ENST00000575100 RMI2Q96E14 147 aa4.63□□□□□ -1.67
VPS53-217ENST00000575100 GFRA4Q9GZZ7 299 aa4.63□□□□□ -1.67
VPS53-217ENST00000575100 ALMS1Q8TCU4 4167 aa4.63□□□□□ -1.67
VPS53-217ENST00000575100 NUPR1O60356 82 aa4.62□□□□□ -1.67
VPS53-217ENST00000575100 MUC4Q99102 2169 aa4.62□□□□□ -1.67
VPS53-217ENST00000575100 A0A1B0GW54 56 aa4.62□□□□□ -1.67
VPS53-217ENST00000575100 CFC1BP0CG36 223 aa4.62□□□□□ -1.67
VPS53-217ENST00000575100 A0A1B0GVX0 72 aa4.61□□□□□ -1.67
VPS53-217ENST00000575100 BPY2O14599 106 aa4.61□□□□□ -1.67
VPS53-217ENST00000575100 DEFB4AO15263 64 aa4.61□□□□□ -1.67
VPS53-217ENST00000575100 IGKCP01834 107 aa4.61□□□□□ -1.67
VPS53-217ENST00000575100 S100A4P26447 101 aaKnown RBP4.61□□□□□ -1.67
VPS53-217ENST00000575100 LUZP6Q538Z0 58 aa4.61□□□□□ -1.67
VPS53-217ENST00000575100 FP248Q71RG6 208 aaPredicted RBP4.61□□□□□ -1.67
VPS53-217ENST00000575100 AMN1Q8IY45 258 aa4.61□□□□□ -1.67
VPS53-217ENST00000575100 POM121L12Q8N7R1 296 aa4.61□□□□□ -1.67
VPS53-217ENST00000575100 C15orf56Q8N910 161 aa4.61□□□□□ -1.67
VPS53-217ENST00000575100 LINC00467Q9BRT7 94 aa4.61□□□□□ -1.67
VPS53-217ENST00000575100 CNFNQ9BYD5 112 aa4.61□□□□□ -1.67
VPS53-217ENST00000575100 KRTAP4-11Q9BYQ6 195 aa4.61□□□□□ -1.67
VPS53-217ENST00000575100 PLECQ15149 4684 aaKnown RBP4.61□□□□□ -1.67
VPS53-217ENST00000575100 TRBV27A0A0K0K1C4 114 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 A0A1B0GUT8 65 aa4.6□□□□□ -1.67
VPS53-217ENST00000575100 hADV29S1A0JD25 119 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms