RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 XCL1P47992 114 aa10.89□□□□□ -0.67
NUP88-207ENST00000573584 GYPEP15421 78 aa10.87□□□□□ -0.67
NUP88-207ENST00000573584 SMIM20Q8N5G0 67 aa10.87□□□□□ -0.67
NUP88-207ENST00000573584 C16orf95Q9H693 158 aa10.87□□□□□ -0.67
NUP88-207ENST00000573584 SS18Q15532 418 aa10.86□□□□□ -0.67
NUP88-207ENST00000573584 SLPIP03973 132 aa10.85□□□□□ -0.67
NUP88-207ENST00000573584 OBSCN-AS1Q96MR7 158 aa10.85□□□□□ -0.67
NUP88-207ENST00000573584 RNASE1P07998 156 aaKnown RBP10.85□□□□□ -0.67
NUP88-207ENST00000573584 CLPSL2Q6UWE3 100 aa10.85□□□□□ -0.67
NUP88-207ENST00000573584 KIR2DL5BQ8NHK3 375 aa10.85□□□□□ -0.67
NUP88-207ENST00000573584 NCR3O14931 201 aa10.84□□□□□ -0.67
NUP88-207ENST00000573584 TMEM126AQ9H061 195 aa10.84□□□□□ -0.67
NUP88-207ENST00000573584 KLK5Q9Y337 293 aaPredicted RBP10.84□□□□□ -0.67
NUP88-207ENST00000573584 LY6G6DO95868 133 aa10.84□□□□□ -0.67
NUP88-207ENST00000573584 C3orf22Q8N5N4 141 aa10.84□□□□□ -0.67
NUP88-207ENST00000573584 A0A1B0GUV1 79 aa10.83□□□□□ -0.68
NUP88-207ENST00000573584 Q8IZM0 81 aa10.83□□□□□ -0.68
NUP88-207ENST00000573584 A0A096LPF7 62 aa10.82□□□□□ -0.68
NUP88-207ENST00000573584 C9orf153Q5TBE3 101 aa10.82□□□□□ -0.68
NUP88-207ENST00000573584 MTORP42345 2549 aa10.82□□□□□ -0.68
NUP88-207ENST00000573584 UQCRQO14949 82 aa10.82□□□□□ -0.68
NUP88-207ENST00000573584 LINC00846Q9NV44 126 aa10.82□□□□□ -0.68
NUP88-207ENST00000573584 FN1P02751 2386 aaKnown RBP10.82□□□□□ -0.68
NUP88-207ENST00000573584 ORMDL1Q9P0S3 153 aa10.81□□□□□ -0.68
NUP88-207ENST00000573584 LINC00612Q8N6U2 182 aa10.81□□□□□ -0.68
NUP88-207ENST00000573584 ACANP16112 2415 aa10.81□□□□□ -0.68
NUP88-207ENST00000573584 PRR3P79522 188 aaKnown RBP10.8□□□□□ -0.68
NUP88-207ENST00000573584 PRO0255Q9UI72 69 aa10.8□□□□□ -0.68
NUP88-207ENST00000573584 NBEAL2Q6ZNJ1 2754 aa10.8□□□□□ -0.68
NUP88-207ENST00000573584 IGKV3D-7A0A0C4DH55 119 aa10.79□□□□□ -0.68
NUP88-207ENST00000573584 LINC00526Q96FQ7 95 aa10.79□□□□□ -0.68
NUP88-207ENST00000573584 KRTAP1-1Q07627 177 aa10.79□□□□□ -0.68
NUP88-207ENST00000573584 HIST1H4AP62805 103 aaKnown RBP10.78□□□□□ -0.68
NUP88-207ENST00000573584 GCN1Q92616 2671 aaKnown RBP10.78□□□□□ -0.68
NUP88-207ENST00000573584 LINC01561Q8N1V8 128 aa10.78□□□□□ -0.68
NUP88-207ENST00000573584 LINC00269Q8N2A0 174 aa10.78□□□□□ -0.68
NUP88-207ENST00000573584 COX7CP15954 63 aa10.77□□□□□ -0.69
NUP88-207ENST00000573584 NANOS2P60321 138 aaKnown RBP10.77□□□□□ -0.69
NUP88-207ENST00000573584 Q6JHZ5 121 aa10.77□□□□□ -0.69
NUP88-207ENST00000573584 X6R8D5 127 aa10.77□□□□□ -0.69
NUP88-207ENST00000573584 ATOX1O00244 68 aa10.76□□□□□ -0.69
NUP88-207ENST00000573584 KIAA0087Q14695 138 aa10.75□□□□□ -0.69
NUP88-207ENST00000573584 CFAP161Q6P656 301 aa10.75□□□□□ -0.69
NUP88-207ENST00000573584 CD164L2Q6UWJ8 174 aa10.75□□□□□ -0.69
NUP88-207ENST00000573584 Q8N814 137 aa10.75□□□□□ -0.69
NUP88-207ENST00000573584 ANK3Q12955 4377 aaKnown RBP10.75□□□□□ -0.69
NUP88-207ENST00000573584 C2orf48Q96LS8 159 aa10.75□□□□□ -0.69
NUP88-207ENST00000573584 IGLV10-54A0A075B6I4 117 aa10.74□□□□□ -0.69
NUP88-207ENST00000573584 COX17Q14061 63 aa10.74□□□□□ -0.69
NUP88-207ENST00000573584 CHCHD10Q8WYQ3 142 aaPredicted RBP10.74□□□□□ -0.69
NUP88-207ENST00000573584 LINC00167Q96N53 147 aa10.74□□□□□ -0.69
NUP88-207ENST00000573584 A0A1B0GX51 115 aa10.74□□□□□ -0.69
NUP88-207ENST00000573584 NDUFC2O95298 119 aa10.74□□□□□ -0.69
NUP88-207ENST00000573584 CCKP06307 115 aa10.74□□□□□ -0.69
NUP88-207ENST00000573584 SMIM9A6NGZ8 99 aa10.73□□□□□ -0.69
NUP88-207ENST00000573584 RPL18AQ02543 176 aaKnown RBP10.73□□□□□ -0.69
NUP88-207ENST00000573584 C9orf116Q5BN46 136 aaPredicted RBP10.73□□□□□ -0.69
NUP88-207ENST00000573584 A0A087WVE0 104 aa10.72□□□□□ -0.69
NUP88-207ENST00000573584 ANGP03950 147 aaKnown RBP10.72□□□□□ -0.69
NUP88-207ENST00000573584 HILS1P60008 231 aa10.72□□□□□ -0.69
NUP88-207ENST00000573584 Q8N3U1 123 aa10.72□□□□□ -0.69
NUP88-207ENST00000573584 JMJD7-PLA2G4BH0Y9G9 81 aa10.72□□□□□ -0.69
NUP88-207ENST00000573584 TMEM256-PLSCR3K7ERE1 68 aa10.72□□□□□ -0.69
NUP88-207ENST00000573584 REG3AQ06141 175 aa10.71□□□□□ -0.69
NUP88-207ENST00000573584 PDZD2O15018 2839 aa10.71□□□□□ -0.7
NUP88-207ENST00000573584 DEFB4AO15263 64 aa10.71□□□□□ -0.7
NUP88-207ENST00000573584 IGHV4-28A0A0C4DH34 117 aa10.7□□□□□ -0.7
NUP88-207ENST00000573584 LINC00482Q8N8I6 264 aa10.7□□□□□ -0.7
NUP88-207ENST00000573584 CRYGAP11844 174 aa10.7□□□□□ -0.7
NUP88-207ENST00000573584 KRTAP10-3P60369 221 aa10.7□□□□□ -0.7
NUP88-207ENST00000573584 LYRM9A8MSI8 78 aa10.69□□□□□ -0.7
NUP88-207ENST00000573584 C6orf99Q4VX62 202 aa10.69□□□□□ -0.7
NUP88-207ENST00000573584 TENM4Q6N022 2769 aa10.69□□□□□ -0.7
NUP88-207ENST00000573584 Q8NDZ9 215 aa10.68□□□□□ -0.7
NUP88-207ENST00000573584 S100A7L2Q5SY68 101 aa10.68□□□□□ -0.7
NUP88-207ENST00000573584 hADV29S1A0JD25 119 aa10.67□□□□□ -0.7
NUP88-207ENST00000573584 DEFB135Q30KP9 77 aa10.67□□□□□ -0.7
NUP88-207ENST00000573584 USP17L23D6RBM5 183 aa10.66□□□□□ -0.7
NUP88-207ENST00000573584 ITPR2Q14571 2701 aa10.66□□□□□ -0.7
NUP88-207ENST00000573584 SERP2Q8N6R1 65 aa10.65□□□□□ -0.7
NUP88-207ENST00000573584 VWFP04275 2813 aa10.65□□□□□ -0.7
NUP88-207ENST00000573584 DAD1P61803 113 aa10.64□□□□□ -0.71
NUP88-207ENST00000573584 C10orf25Q5T742 122 aa10.64□□□□□ -0.71
NUP88-207ENST00000573584 UNQ6190/PRO20217Q6UXQ8 127 aa10.64□□□□□ -0.71
NUP88-207ENST00000573584 C6orf223Q8N319 242 aa10.64□□□□□ -0.71
NUP88-207ENST00000573584 LINC00575Q6W349 94 aa10.64□□□□□ -0.71
NUP88-207ENST00000573584 CYSTM1Q9H1C7 97 aa10.63□□□□□ -0.71
NUP88-207ENST00000573584 SPAG11BQ08648 103 aa10.62□□□□□ -0.71
NUP88-207ENST00000573584 SPATA3Q8NHX4 192 aa10.62□□□□□ -0.71
NUP88-207ENST00000573584 WFDC9Q8NEX5 89 aa10.62□□□□□ -0.71
NUP88-207ENST00000573584 ATP5EP2Q5VTU8 51 aa10.61□□□□□ -0.71
NUP88-207ENST00000573584 SMR3AQ99954 134 aa10.61□□□□□ -0.71
NUP88-207ENST00000573584 CYSRT1A8MQ03 144 aa10.6□□□□□ -0.71
NUP88-207ENST00000573584 UBL5Q9BZL1 73 aa10.6□□□□□ -0.71
NUP88-207ENST00000573584 HIVEP2P31629 2446 aa10.6□□□□□ -0.71
NUP88-207ENST00000573584 CELA1Q9UNI1 258 aa10.6□□□□□ -0.71
NUP88-207ENST00000573584 LOC107984640A0A0U1RRK4 108 aa10.59□□□□□ -0.71
NUP88-207ENST00000573584 HTN3P15516 51 aa10.59□□□□□ -0.71
NUP88-207ENST00000573584 RBM3P98179 157 aaKnown RBP10.59□□□□□ -0.71
NUP88-207ENST00000573584 ENHOQ6UWT2 76 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 148.2 ms