RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 GYPEP15421 78 aa7.52□□□□□ -1.21
CCDC40-207ENST00000572253 CSNK1G2-AS1Q8NCQ2 148 aa7.52□□□□□ -1.21
CCDC40-207ENST00000572253 IGSF10Q6WRI0 2623 aa7.51□□□□□ -1.21
CCDC40-207ENST00000572253 Q8IZM0 81 aa7.51□□□□□ -1.21
CCDC40-207ENST00000572253 MXRA5Q9NR99 2828 aa7.51□□□□□ -1.21
CCDC40-207ENST00000572253 IGKV3D-7A0A0C4DH55 119 aa7.51□□□□□ -1.21
CCDC40-207ENST00000572253 NCR3O14931 201 aa7.51□□□□□ -1.21
CCDC40-207ENST00000572253 PLA2G2AP14555 144 aa7.5□□□□□ -1.21
CCDC40-207ENST00000572253 LINC01006Q8NI28 216 aa7.5□□□□□ -1.21
CCDC40-207ENST00000572253 OBSCN-AS1Q96MR7 158 aa7.5□□□□□ -1.21
CCDC40-207ENST00000572253 CHD6Q8TD26 2715 aa7.5□□□□□ -1.21
CCDC40-207ENST00000572253 A0A1B0GX51 115 aa7.5□□□□□ -1.21
CCDC40-207ENST00000572253 LY6G6DO95868 133 aa7.5□□□□□ -1.21
CCDC40-207ENST00000572253 SLPIP03973 132 aa7.5□□□□□ -1.21
CCDC40-207ENST00000572253 ESM1Q9NQ30 184 aa7.5□□□□□ -1.21
CCDC40-207ENST00000572253 C19orf73Q9NVV2 129 aa7.5□□□□□ -1.21
CCDC40-207ENST00000572253 KIR2DL5BQ8NHK3 375 aa7.5□□□□□ -1.21
CCDC40-207ENST00000572253 A0A0U1RQV1 116 aa7.49□□□□□ -1.21
CCDC40-207ENST00000572253 A0A1B0GUV1 79 aa7.49□□□□□ -1.21
CCDC40-207ENST00000572253 RPL18AQ02543 176 aaKnown RBP7.49□□□□□ -1.21
CCDC40-207ENST00000572253 LINC01561Q8N1V8 128 aa7.49□□□□□ -1.21
CCDC40-207ENST00000572253 LINC00846Q9NV44 126 aa7.49□□□□□ -1.21
CCDC40-207ENST00000572253 JMJD7-PLA2G4BH0Y9G9 81 aa7.49□□□□□ -1.21
CCDC40-207ENST00000572253 RBM3P98179 157 aaKnown RBP7.49□□□□□ -1.21
CCDC40-207ENST00000572253 TEX15Q9BXT5 2789 aa7.49□□□□□ -1.21
CCDC40-207ENST00000572253 C16orf95Q9H693 158 aa7.49□□□□□ -1.21
CCDC40-207ENST00000572253 UTP20O75691 2785 aaKnown RBP7.48□□□□□ -1.21
CCDC40-207ENST00000572253 CLPSL2Q6UWE3 100 aa7.48□□□□□ -1.21
CCDC40-207ENST00000572253 C9orf129Q5T035 196 aaKnown RBP7.48□□□□□ -1.21
CCDC40-207ENST00000572253 WFDC11Q8NEX6 87 aa7.48□□□□□ -1.21
CCDC40-207ENST00000572253 BRK1Q8WUW1 75 aa7.48□□□□□ -1.21
CCDC40-207ENST00000572253 PRO0255Q9UI72 69 aa7.48□□□□□ -1.21
CCDC40-207ENST00000572253 KRTAP1-3Q8IUG1 177 aa7.47□□□□□ -1.21
CCDC40-207ENST00000572253 TMEM256-PLSCR3K7ERE1 68 aa7.47□□□□□ -1.21
CCDC40-207ENST00000572253 CCKP06307 115 aa7.47□□□□□ -1.21
CCDC40-207ENST00000572253 FLNBO75369 2602 aaKnown RBP7.47□□□□□ -1.21
CCDC40-207ENST00000572253 NDUFC2O95298 119 aa7.46□□□□□ -1.22
CCDC40-207ENST00000572253 COX17Q14061 63 aa7.46□□□□□ -1.22
CCDC40-207ENST00000572253 CRYGAP11844 174 aa7.46□□□□□ -1.22
CCDC40-207ENST00000572253 V9GYY9 64 aa7.45□□□□□ -1.22
CCDC40-207ENST00000572253 CD164L2Q6UWJ8 174 aa7.45□□□□□ -1.22
CCDC40-207ENST00000572253 Q8N814 137 aa7.45□□□□□ -1.22
CCDC40-207ENST00000572253 A0A096LPF7 62 aa7.45□□□□□ -1.22
CCDC40-207ENST00000572253 ATP5EP2Q5VTU8 51 aa7.45□□□□□ -1.22
CCDC40-207ENST00000572253 SERP2Q8N6R1 65 aa7.45□□□□□ -1.22
CCDC40-207ENST00000572253 SMIM9A6NGZ8 99 aa7.44□□□□□ -1.22
CCDC40-207ENST00000572253 ZNF843Q8N446 348 aa7.44□□□□□ -1.22
CCDC40-207ENST00000572253 LINC00612Q8N6U2 182 aa7.44□□□□□ -1.22
CCDC40-207ENST00000572253 C2orf48Q96LS8 159 aa7.44□□□□□ -1.22
CCDC40-207ENST00000572253 LINC00167Q96N53 147 aa7.44□□□□□ -1.22
CCDC40-207ENST00000572253 USP17L23D6RBM5 183 aa7.44□□□□□ -1.22
CCDC40-207ENST00000572253 LINC00269Q8N2A0 174 aa7.44□□□□□ -1.22
CCDC40-207ENST00000572253 BBC3Q96PG8 261 aaPredicted RBP7.44□□□□□ -1.22
CCDC40-207ENST00000572253 hADV29S1A0JD25 119 aa7.43□□□□□ -1.22
CCDC40-207ENST00000572253 CHCHD10Q8WYQ3 142 aaPredicted RBP7.43□□□□□ -1.22
CCDC40-207ENST00000572253 ANGP03950 147 aaKnown RBP7.43□□□□□ -1.22
CCDC40-207ENST00000572253 FBN2P35556 2912 aa7.43□□□□□ -1.22
CCDC40-207ENST00000572253 A0A087WVE0 104 aa7.42□□□□□ -1.22
CCDC40-207ENST00000572253 PRR3P79522 188 aaKnown RBP7.42□□□□□ -1.22
CCDC40-207ENST00000572253 UBL5Q9BZL1 73 aa7.42□□□□□ -1.22
CCDC40-207ENST00000572253 LYRM9A8MSI8 78 aa7.42□□□□□ -1.22
CCDC40-207ENST00000572253 REG3AQ06141 175 aa7.41□□□□□ -1.22
CCDC40-207ENST00000572253 IGLV10-54A0A075B6I4 117 aa7.41□□□□□ -1.22
CCDC40-207ENST00000572253 C6orf99Q4VX62 202 aa7.41□□□□□ -1.22
CCDC40-207ENST00000572253 NANOS2P60321 138 aaKnown RBP7.4□□□□□ -1.22
CCDC40-207ENST00000572253 KIAA0087Q14695 138 aa7.4□□□□□ -1.22
CCDC40-207ENST00000572253 MUC7Q8TAX7 377 aa7.4□□□□□ -1.23
CCDC40-207ENST00000572253 ITPR3Q14573 2671 aa7.39□□□□□ -1.23
CCDC40-207ENST00000572253 IGHV4-28A0A0C4DH34 117 aa7.39□□□□□ -1.23
CCDC40-207ENST00000572253 HRCT1Q6UXD1 115 aa7.39□□□□□ -1.23
CCDC40-207ENST00000572253 X6R8D5 127 aa7.39□□□□□ -1.23
CCDC40-207ENST00000572253 TMEM258P61165 79 aa7.39□□□□□ -1.23
CCDC40-207ENST00000572253 DAD1P61803 113 aa7.38□□□□□ -1.23
CCDC40-207ENST00000572253 LAMTOR3Q9UHA4 124 aa7.38□□□□□ -1.23
CCDC40-207ENST00000572253 C9orf116Q5BN46 136 aaPredicted RBP7.38□□□□□ -1.23
CCDC40-207ENST00000572253 HILS1P60008 231 aa7.38□□□□□ -1.23
CCDC40-207ENST00000572253 SPAG11BQ08648 103 aa7.38□□□□□ -1.23
CCDC40-207ENST00000572253 LINC00575Q6W349 94 aa7.37□□□□□ -1.23
CCDC40-207ENST00000572253 SETXQ7Z333 2677 aaKnown RBP7.37□□□□□ -1.23
CCDC40-207ENST00000572253 H3BQ85 93 aa7.37□□□□□ -1.23
CCDC40-207ENST00000572253 ZNF561-AS1K7EIQ3 104 aa7.37□□□□□ -1.23
CCDC40-207ENST00000572253 GHRHP01286 108 aa7.37□□□□□ -1.23
CCDC40-207ENST00000572253 FLNAP21333 2647 aaKnown RBP7.37□□□□□ -1.23
CCDC40-207ENST00000572253 TRBV10-3A0A0K0K1G6 114 aa7.36□□□□□ -1.23
CCDC40-207ENST00000572253 RPS28P62857 69 aaKnown RBP7.36□□□□□ -1.23
CCDC40-207ENST00000572253 HTN3P15516 51 aa7.36□□□□□ -1.23
CCDC40-207ENST00000572253 ENHOQ6UWT2 76 aa7.36□□□□□ -1.23
CCDC40-207ENST00000572253 APOC4P55056 127 aa7.35□□□□□ -1.23
CCDC40-207ENST00000572253 HAMPP81172 84 aa7.35□□□□□ -1.23
CCDC40-207ENST00000572253 LINC00482Q8N8I6 264 aa7.35□□□□□ -1.23
CCDC40-207ENST00000572253 TRAV23DV6A0A075B6W5 121 aa7.35□□□□□ -1.23
CCDC40-207ENST00000572253 DEFB135Q30KP9 77 aa7.35□□□□□ -1.23
CCDC40-207ENST00000572253 CSMD2Q7Z408 3487 aa7.35□□□□□ -1.23
CCDC40-207ENST00000572253 LOC107984640A0A0U1RRK4 108 aa7.35□□□□□ -1.23
CCDC40-207ENST00000572253 DEFB4AO15263 64 aa7.35□□□□□ -1.23
CCDC40-207ENST00000572253 DSCR8Q96T75 97 aa7.35□□□□□ -1.23
CCDC40-207ENST00000572253 UPK3BQ9BT76 320 aa7.35□□□□□ -1.23
CCDC40-207ENST00000572253 KRTAP1-1Q07627 177 aa7.34□□□□□ -1.23
CCDC40-207ENST00000572253 UNQ6190/PRO20217Q6UXQ8 127 aa7.34□□□□□ -1.23
CCDC40-207ENST00000572253 PDE6GP18545 87 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms