RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 LINC00612Q8N6U2 182 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 LINC01006Q8NI28 216 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 MUC7Q8TAX7 377 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 FAM104AQ969W3 186 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 TTTY12Q9BZ98 90 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 KCNQ1DNQ9H478 68 aa2.1□□□□□ -2.07
VPS35-208ENST00000568612 SVILO95425 2214 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.09□□□□□ -2.07
VPS35-208ENST00000568612 TRGV2A0A075B6R0 118 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 IGHV3-15A0A0B4J1V0 119 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 SRRM5B3KS81 715 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 H3BPC8 53 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 M0R2N4 97 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 IGLV1-47P01700 117 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 SPINK7P58062 85 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 KRTAP10-3P60369 221 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 C17orf58Q2M2W7 97 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 CSAG1Q6PB30 78 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 COA5Q86WW8 74 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 CNEP1R1Q8N9A8 125 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 WFDC10AQ9H1F0 79 aa2.09□□□□□ -2.07
VPS35-208ENST00000568612 F5P12259 2224 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 IGHV7-81A0A0B4J1V7 117 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 IGHV3-35A0A0C4DH35 117 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 TRBV6-4A0A1B0GX49 114 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 KRTAP9-6A8MVA2 160 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 H0Y9P7 68 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 K7EIM0 57 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 M0QY20 66 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 RNASE3P12724 160 aaKnown RBP2.08□□□□□ -2.08
VPS35-208ENST00000568612 COX7BP24311 80 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 HIGD2BQ4VC39 106 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 KPRPQ5T749 579 aaPredicted RBP2.08□□□□□ -2.08
VPS35-208ENST00000568612 PRR9Q5T870 116 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 Q6ZR54 194 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 ZFAND2AQ8N6M9 145 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 Q8NDZ9 215 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 GAFA1Q96PS6 74 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 KRTAP4-4Q9BYR3 166 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 CDKN2A-AS1Q9UH64 79 aa2.08□□□□□ -2.08
VPS35-208ENST00000568612 IGLV11-55A0A075B6I3 123 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 A0A096LNT2 108 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 IGHV3-21A0A0B4J1V1 117 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 IGHV3-66A0A0C4DH42 116 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 PRB1P04280 392 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 MSMBP08118 114 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 CCL18P55774 89 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 SPAG11BQ08648 103 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 PRR4Q16378 134 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 Q8N377 158 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 RTTNQ86VV8 2226 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 PTPRQQ9UMZ3 2332 aa2.07□□□□□ -2.08
VPS35-208ENST00000568612 SEC16AO15027 2179 aa2.06□□□□□ -2.08
VPS35-208ENST00000568612 SDK2Q58EX2 2172 aa2.06□□□□□ -2.08
VPS35-208ENST00000568612 IGHV3OR16-12A0A075B7B8 117 aa2.06□□□□□ -2.08
VPS35-208ENST00000568612 CD52P31358 61 aa2.06□□□□□ -2.08
VPS35-208ENST00000568612 SPAG11AQ6PDA7 123 aa2.06□□□□□ -2.08
VPS35-208ENST00000568612 CXCL17Q6UXB2 119 aa2.06□□□□□ -2.08
VPS35-208ENST00000568612 Q8N9L7 120 aa2.06□□□□□ -2.08
VPS35-208ENST00000568612 ST20-AS1Q8NBB2 130 aa2.06□□□□□ -2.08
VPS35-208ENST00000568612 BRWD1Q9NSI6 2320 aa2.05□□□□□ -2.08
VPS35-208ENST00000568612 PRB2P02812 416 aaPredicted RBP2.05□□□□□ -2.08
VPS35-208ENST00000568612 P0C880 135 aa2.05□□□□□ -2.08
VPS35-208ENST00000568612 CHTF8P0CG12 524 aa2.05□□□□□ -2.08
VPS35-208ENST00000568612 IGHV1-2P23083 117 aa2.05□□□□□ -2.08
VPS35-208ENST00000568612 CMC4P56277 68 aaPredicted RBP2.05□□□□□ -2.08
VPS35-208ENST00000568612 PRB3Q04118 309 aaPredicted RBP2.05□□□□□ -2.08
VPS35-208ENST00000568612 MIR22HGQ0VDD5 57 aa2.05□□□□□ -2.08
VPS35-208ENST00000568612 LINC00575Q6W349 94 aa2.05□□□□□ -2.08
VPS35-208ENST00000568612 Q6ZQY7 126 aa2.05□□□□□ -2.08
VPS35-208ENST00000568612 C9orf163Q8N9P6 203 aa2.05□□□□□ -2.08
VPS35-208ENST00000568612 NPBQ8NG41 125 aa2.05□□□□□ -2.08
VPS35-208ENST00000568612 CHCHD7Q9BUK0 85 aa2.05□□□□□ -2.08
VPS35-208ENST00000568612 CR1P17927 2039 aa2.05□□□□□ -2.08
VPS35-208ENST00000568612 A0A087WSZ3 146 aa2.04□□□□□ -2.08
VPS35-208ENST00000568612 TRGV4A0A0C4DH28 118 aa2.04□□□□□ -2.08
VPS35-208ENST00000568612 IGHV3-20A0A0C4DH32 117 aa2.04□□□□□ -2.08
VPS35-208ENST00000568612 IGHV3-64DA0A0J9YX35 117 aa2.04□□□□□ -2.08
VPS35-208ENST00000568612 LINC00959A0A1B0GUT2 108 aa2.04□□□□□ -2.08
VPS35-208ENST00000568612 LINC00158P58513 81 aa2.04□□□□□ -2.08
VPS35-208ENST00000568612 CCL14Q16627 93 aa2.04□□□□□ -2.08
VPS35-208ENST00000568612 DEFB112Q30KQ8 113 aa2.04□□□□□ -2.08
VPS35-208ENST00000568612 LINC00483Q53H64 154 aa2.04□□□□□ -2.08
VPS35-208ENST00000568612 REG3GQ6UW15 175 aa2.04□□□□□ -2.08
VPS35-208ENST00000568612 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.04□□□□□ -2.08
VPS35-208ENST00000568612 CNTRLQ7Z7A1 2325 aa2.03□□□□□ -2.08
VPS35-208ENST00000568612 KIAA0100Q14667 2235 aaKnown RBP2.03□□□□□ -2.08
VPS35-208ENST00000568612 IGHV4-30-2A0A087WSY4 118 aa2.03□□□□□ -2.08
VPS35-208ENST00000568612 A8MWP4 228 aa2.03□□□□□ -2.08
VPS35-208ENST00000568612 MRPL33O75394 65 aaKnown RBP2.03□□□□□ -2.08
VPS35-208ENST00000568612 COX7A1P24310 79 aa2.03□□□□□ -2.08
VPS35-208ENST00000568612 COX6A2Q02221 97 aa2.03□□□□□ -2.08
VPS35-208ENST00000568612 KRTAP25-1Q3LHN0 102 aa2.03□□□□□ -2.08
VPS35-208ENST00000568612 SPATA8Q6RVD6 105 aa2.03□□□□□ -2.08
VPS35-208ENST00000568612 CSNK1G2-AS1Q8NCQ2 148 aa2.03□□□□□ -2.08
VPS35-208ENST00000568612 DEFB104AQ8WTQ1 72 aa2.03□□□□□ -2.08
VPS35-208ENST00000568612 PRR34Q9NV39 138 aa2.03□□□□□ -2.08
VPS35-208ENST00000568612 A0A1W2PPR1 153 aa2.02□□□□□ -2.09
VPS35-208ENST00000568612 KRTAP4-16G5E9R7 235 aaPredicted RBP2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms