RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 G0S2P27469 103 aa10.13□□□□□ -0.79
CLN3-231ENST00000568422 C6orf226Q5I0X4 101 aa10.13□□□□□ -0.79
CLN3-231ENST00000568422 Q8IZM0 81 aa10.13□□□□□ -0.79
CLN3-231ENST00000568422 SEC11CQ9BY50 192 aa10.13□□□□□ -0.79
CLN3-231ENST00000568422 NXT2Q9NPJ8 142 aaKnown RBP10.12□□□□□ -0.79
CLN3-231ENST00000568422 TOMM7Q9P0U1 55 aa10.12□□□□□ -0.79
CLN3-231ENST00000568422 CARHSP1Q9Y2V2 147 aaKnown RBP10.12□□□□□ -0.79
CLN3-231ENST00000568422 HERVK_113P63121 156 aa10.11□□□□□ -0.79
CLN3-231ENST00000568422 NDUFA5Q16718 116 aa10.11□□□□□ -0.79
CLN3-231ENST00000568422 ALKBH7Q9BT30 221 aaPredicted RBP10.11□□□□□ -0.79
CLN3-231ENST00000568422 NUPR1O60356 82 aa10.1□□□□□ -0.79
CLN3-231ENST00000568422 ZNF861PO60384 105 aa10.1□□□□□ -0.79
CLN3-231ENST00000568422 LBHQ53QV2 105 aaPredicted RBP10.1□□□□□ -0.79
CLN3-231ENST00000568422 ZC2HC1BQ5TFG8 222 aa10.1□□□□□ -0.79
CLN3-231ENST00000568422 C22orf24Q9Y442 160 aa10.09□□□□□ -0.79
CLN3-231ENST00000568422 F8VRH5 84 aa10.08□□□□□ -0.8
CLN3-231ENST00000568422 TIMM17AQ99595 171 aa10.08□□□□□ -0.8
CLN3-231ENST00000568422 CTDSP1Q9GZU7 261 aa10.08□□□□□ -0.8
CLN3-231ENST00000568422 GEMIN7Q9H840 131 aaKnown RBP10.08□□□□□ -0.8
CLN3-231ENST00000568422 CXCL5P42830 114 aa10.07□□□□□ -0.8
CLN3-231ENST00000568422 LINC00469Q8N7U9 141 aa10.07□□□□□ -0.8
CLN3-231ENST00000568422 TP73-AS1Q9UF72 201 aa10.07□□□□□ -0.8
CLN3-231ENST00000568422 CDKN2A-AS1Q9UH64 79 aa10.07□□□□□ -0.8
CLN3-231ENST00000568422 XAGE1AQ9HD64 81 aa10.06□□□□□ -0.8
CLN3-231ENST00000568422 TOMM6Q96B49 74 aa10.05□□□□□ -0.8
CLN3-231ENST00000568422 ERASQ7Z444 233 aa10.04□□□□□ -0.8
CLN3-231ENST00000568422 MRPL55Q7Z7F7 128 aaKnown RBP10.04□□□□□ -0.8
CLN3-231ENST00000568422 LINC01549A6NIU2 74 aa10.03□□□□□ -0.8
CLN3-231ENST00000568422 RPL28P46779 137 aaKnown RBP10.03□□□□□ -0.8
CLN3-231ENST00000568422 PRR4Q16378 134 aa10.03□□□□□ -0.8
CLN3-231ENST00000568422 APOC3P02656 99 aa10.02□□□□□ -0.81
CLN3-231ENST00000568422 BCE1O60756 84 aa10.01□□□□□ -0.81
CLN3-231ENST00000568422 PDZD11Q5EBL8 140 aa10.01□□□□□ -0.81
CLN3-231ENST00000568422 SCGB3A1Q96QR1 104 aa10.01□□□□□ -0.81
CLN3-231ENST00000568422 TINCRA0A1B0GVN0 87 aa10□□□□□ -0.81
CLN3-231ENST00000568422 SMIM1B2RUZ4 78 aa10□□□□□ -0.81
CLN3-231ENST00000568422 TRAV9-1A0A075B6T8 112 aa9.99□□□□□ -0.81
CLN3-231ENST00000568422 IGLV5-45A0A087WSX0 123 aa9.99□□□□□ -0.81
CLN3-231ENST00000568422 RHEBQ15382 184 aa9.99□□□□□ -0.81
CLN3-231ENST00000568422 SVBPQ8N300 66 aa9.99□□□□□ -0.81
CLN3-231ENST00000568422 COX7B2Q8TF08 81 aa9.99□□□□□ -0.81
CLN3-231ENST00000568422 KIAA1644Q3SXP7 199 aa9.98□□□□□ -0.81
CLN3-231ENST00000568422 CRYGAP11844 174 aa9.97□□□□□ -0.81
CLN3-231ENST00000568422 LINC00167Q96N53 147 aa9.97□□□□□ -0.81
CLN3-231ENST00000568422 LINC01546A6NGU7 62 aa9.96□□□□□ -0.82
CLN3-231ENST00000568422 SNAPINO95295 136 aa9.96□□□□□ -0.82
CLN3-231ENST00000568422 CST9LQ9H4G1 147 aa9.96□□□□□ -0.82
CLN3-231ENST00000568422 MUC2Q02817 5179 aa9.96□□□□□ -0.82
CLN3-231ENST00000568422 IGLV5-37A0A075B6J1 123 aa9.95□□□□□ -0.82
CLN3-231ENST00000568422 RPL37AP8A6NKH3 93 aa9.95□□□□□ -0.82
CLN3-231ENST00000568422 ATP6V1G1O75348 118 aa9.95□□□□□ -0.82
CLN3-231ENST00000568422 TYMSOSQ8TAI1 123 aa9.95□□□□□ -0.82
CLN3-231ENST00000568422 GNB1LQ9BYB4 327 aa9.95□□□□□ -0.82
CLN3-231ENST00000568422 MRPL18Q9H0U6 180 aaKnown RBP9.95□□□□□ -0.82
CLN3-231ENST00000568422 RPS10P5Q9NQ39 176 aa9.95□□□□□ -0.82
CLN3-231ENST00000568422 A0A087X002 238 aa9.94□□□□□ -0.82
CLN3-231ENST00000568422 PMVKQ15126 192 aa9.94□□□□□ -0.82
CLN3-231ENST00000568422 NKAPP1Q8N9T2 125 aa9.94□□□□□ -0.82
CLN3-231ENST00000568422 TSPAN13O95857 204 aa9.93□□□□□ -0.82
CLN3-231ENST00000568422 H3BRM9 83 aa9.92□□□□□ -0.82
CLN3-231ENST00000568422 ATP5LO75964 103 aa9.92□□□□□ -0.82
CLN3-231ENST00000568422 SPINK8P0C7L1 97 aa9.92□□□□□ -0.82
CLN3-231ENST00000568422 S100PP25815 95 aa9.92□□□□□ -0.82
CLN3-231ENST00000568422 RAB5BP61020 215 aa9.92□□□□□ -0.82
CLN3-231ENST00000568422 A0A0U1RQV1 116 aa9.91□□□□□ -0.82
CLN3-231ENST00000568422 GAGE10A6NGK3 116 aa9.91□□□□□ -0.82
CLN3-231ENST00000568422 COX19Q49B96 90 aa9.91□□□□□ -0.82
CLN3-231ENST00000568422 KRTAP13-1Q8IUC0 172 aa9.91□□□□□ -0.82
CLN3-231ENST00000568422 YPEL4Q96NS1 127 aa9.91□□□□□ -0.82
CLN3-231ENST00000568422 UBE2AP49459 152 aa9.9□□□□□ -0.82
CLN3-231ENST00000568422 SMCO4Q9NRQ5 59 aa9.9□□□□□ -0.82
CLN3-231ENST00000568422 FAM229BQ4G0N7 80 aa9.89□□□□□ -0.83
CLN3-231ENST00000568422 FA2HQ7L5A8 372 aa9.89□□□□□ -0.83
CLN3-231ENST00000568422 CBLN2Q8IUK8 224 aa9.88□□□□□ -0.83
CLN3-231ENST00000568422 S100A1P23297 94 aa9.87□□□□□ -0.83
CLN3-231ENST00000568422 IGLV5-39A0A0G2JS06 123 aa9.86□□□□□ -0.83
CLN3-231ENST00000568422 IGLC3P0DOY3 106 aa9.86□□□□□ -0.83
CLN3-231ENST00000568422 IGKV2-28A0A075B6P5 120 aa9.85□□□□□ -0.83
CLN3-231ENST00000568422 SCO1O75880 301 aa9.85□□□□□ -0.83
CLN3-231ENST00000568422 IGKV2D-28P01615 120 aa9.85□□□□□ -0.83
CLN3-231ENST00000568422 CTAG1AP78358 180 aa9.85□□□□□ -0.83
CLN3-231ENST00000568422 FABP9Q0Z7S8 132 aa9.85□□□□□ -0.83
CLN3-231ENST00000568422 COX17Q14061 63 aa9.85□□□□□ -0.83
CLN3-231ENST00000568422 KRTAP13-2Q52LG2 175 aa9.85□□□□□ -0.83
CLN3-231ENST00000568422 ANAPC11Q9NYG5 84 aa9.85□□□□□ -0.83
CLN3-231ENST00000568422 PFN2P35080 140 aa9.84□□□□□ -0.83
CLN3-231ENST00000568422 RPL24P83731 157 aaKnown RBP9.84□□□□□ -0.83
CLN3-231ENST00000568422 SFTA2Q6UW10 78 aa9.83□□□□□ -0.84
CLN3-231ENST00000568422 LINC00304Q8N9R0 145 aa9.83□□□□□ -0.84
CLN3-231ENST00000568422 SND1-IT1Q9HBX3 110 aa9.83□□□□□ -0.84
CLN3-231ENST00000568422 ERG28Q9UKR5 140 aa9.83□□□□□ -0.84
CLN3-231ENST00000568422 IGKV2D-26A0A0A0MRZ7 120 aa9.82□□□□□ -0.84
CLN3-231ENST00000568422 VPREB1P12018 145 aa9.82□□□□□ -0.84
CLN3-231ENST00000568422 NDUFA6P56556 154 aa9.82□□□□□ -0.84
CLN3-231ENST00000568422 ZNF22P17026 224 aaPredicted RBP9.81□□□□□ -0.84
CLN3-231ENST00000568422 TMEM126AQ9H061 195 aa9.81□□□□□ -0.84
CLN3-231ENST00000568422 LINC00614P0C842 121 aa9.8□□□□□ -0.84
CLN3-231ENST00000568422 FAM19A1Q7Z5A9 133 aa9.8□□□□□ -0.84
CLN3-231ENST00000568422 A0A096LNJ9 63 aa9.79□□□□□ -0.84
CLN3-231ENST00000568422 COLCA2A8K830 154 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms