RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 C6orf226Q5I0X4 101 aa9.07□□□□□ -0.96
CLN3-222ENST00000566083 FAM19A3Q7Z5A8 133 aa9.07□□□□□ -0.96
CLN3-222ENST00000566083 CTDSP1Q9GZU7 261 aa9.07□□□□□ -0.96
CLN3-222ENST00000566083 HERVK_113P63121 156 aa9.06□□□□□ -0.96
CLN3-222ENST00000566083 C2orf82Q6UX34 121 aa9.06□□□□□ -0.96
CLN3-222ENST00000566083 Q8IZM0 81 aa9.06□□□□□ -0.96
CLN3-222ENST00000566083 IGIPA6NJ69 53 aa9.05□□□□□ -0.96
CLN3-222ENST00000566083 RPS10P5Q9NQ39 176 aa9.05□□□□□ -0.96
CLN3-222ENST00000566083 LINC01549A6NIU2 74 aa9.05□□□□□ -0.96
CLN3-222ENST00000566083 RHEBQ15382 184 aa9.05□□□□□ -0.96
CLN3-222ENST00000566083 TIMM17AQ99595 171 aa9.05□□□□□ -0.96
CLN3-222ENST00000566083 RPL13AP40429 203 aaKnown RBP9.04□□□□□ -0.96
CLN3-222ENST00000566083 LBHQ53QV2 105 aaPredicted RBP9.04□□□□□ -0.96
CLN3-222ENST00000566083 LINC00173Q6ZV60 143 aa9.04□□□□□ -0.96
CLN3-222ENST00000566083 ALKBH7Q9BT30 221 aaPredicted RBP9.04□□□□□ -0.96
CLN3-222ENST00000566083 GEMIN7Q9H840 131 aaKnown RBP9.04□□□□□ -0.96
CLN3-222ENST00000566083 TOMM7Q9P0U1 55 aa9.04□□□□□ -0.96
CLN3-222ENST00000566083 CXCL5P42830 114 aa9.03□□□□□ -0.96
CLN3-222ENST00000566083 C9orf129Q5T035 196 aaKnown RBP9.03□□□□□ -0.96
CLN3-222ENST00000566083 PRR26Q8N8Z3 221 aa9.03□□□□□ -0.96
CLN3-222ENST00000566083 TRAV9-1A0A075B6T8 112 aa9.02□□□□□ -0.97
CLN3-222ENST00000566083 NUPR1O60356 82 aa9.02□□□□□ -0.97
CLN3-222ENST00000566083 KRTAP11-1Q8IUC1 163 aa9.02□□□□□ -0.97
CLN3-222ENST00000566083 KRTAP7-1Q8IUC3 87 aa9.02□□□□□ -0.97
CLN3-222ENST00000566083 TOMM6Q96B49 74 aa9.02□□□□□ -0.97
CLN3-222ENST00000566083 F8VRH5 84 aa9.01□□□□□ -0.97
CLN3-222ENST00000566083 ZC2HC1BQ5TFG8 222 aa9□□□□□ -0.97
CLN3-222ENST00000566083 ERASQ7Z444 233 aa9□□□□□ -0.97
CLN3-222ENST00000566083 CBLN2Q8IUK8 224 aa9□□□□□ -0.97
CLN3-222ENST00000566083 CDKN2A-AS1Q9UH64 79 aa9□□□□□ -0.97
CLN3-222ENST00000566083 ZNF861PO60384 105 aa8.99□□□□□ -0.97
CLN3-222ENST00000566083 TP73-AS1Q9UF72 201 aa8.99□□□□□ -0.97
CLN3-222ENST00000566083 SCGB3A1Q96QR1 104 aa8.98□□□□□ -0.97
CLN3-222ENST00000566083 KRTAP1-4P0C5Y4 121 aa8.97□□□□□ -0.97
CLN3-222ENST00000566083 PDZD11Q5EBL8 140 aa8.97□□□□□ -0.97
CLN3-222ENST00000566083 YPEL4Q96NS1 127 aa8.97□□□□□ -0.97
CLN3-222ENST00000566083 SMCO4Q9NRQ5 59 aa8.97□□□□□ -0.97
CLN3-222ENST00000566083 C22orf24Q9Y442 160 aa8.97□□□□□ -0.97
CLN3-222ENST00000566083 TINCRA0A1B0GVN0 87 aa8.97□□□□□ -0.97
CLN3-222ENST00000566083 S100PP25815 95 aa8.97□□□□□ -0.97
CLN3-222ENST00000566083 COX19Q49B96 90 aa8.97□□□□□ -0.97
CLN3-222ENST00000566083 LINC00469Q8N7U9 141 aa8.97□□□□□ -0.97
CLN3-222ENST00000566083 XAGE1AQ9HD64 81 aa8.97□□□□□ -0.97
CLN3-222ENST00000566083 RPL28P46779 137 aaKnown RBP8.95□□□□□ -0.98
CLN3-222ENST00000566083 MRPL55Q7Z7F7 128 aaKnown RBP8.95□□□□□ -0.98
CLN3-222ENST00000566083 GNB1LQ9BYB4 327 aa8.95□□□□□ -0.98
CLN3-222ENST00000566083 IGLV5-45A0A087WSX0 123 aa8.94□□□□□ -0.98
CLN3-222ENST00000566083 LINC01546A6NGU7 62 aa8.94□□□□□ -0.98
CLN3-222ENST00000566083 KIAA1644Q3SXP7 199 aa8.94□□□□□ -0.98
CLN3-222ENST00000566083 COX7B2Q8TF08 81 aa8.94□□□□□ -0.98
CLN3-222ENST00000566083 MRPL18Q9H0U6 180 aaKnown RBP8.94□□□□□ -0.98
CLN3-222ENST00000566083 COLCA2A8K830 154 aa8.93□□□□□ -0.98
CLN3-222ENST00000566083 SMIM1B2RUZ4 78 aa8.93□□□□□ -0.98
CLN3-222ENST00000566083 H3BRM9 83 aa8.91□□□□□ -0.98
CLN3-222ENST00000566083 BCE1O60756 84 aa8.91□□□□□ -0.98
CLN3-222ENST00000566083 PMVKQ15126 192 aa8.91□□□□□ -0.98
CLN3-222ENST00000566083 CST9LQ9H4G1 147 aa8.91□□□□□ -0.98
CLN3-222ENST00000566083 FA2HQ7L5A8 372 aa8.9□□□□□ -0.98
CLN3-222ENST00000566083 ATP5LO75964 103 aa8.88□□□□□ -0.99
CLN3-222ENST00000566083 NKAPP1Q8N9T2 125 aa8.88□□□□□ -0.99
CLN3-222ENST00000566083 IGLV5-37A0A075B6J1 123 aa8.88□□□□□ -0.99
CLN3-222ENST00000566083 CRYGAP11844 174 aa8.88□□□□□ -0.99
CLN3-222ENST00000566083 LINC00167Q96N53 147 aa8.88□□□□□ -0.99
CLN3-222ENST00000566083 FABP9Q0Z7S8 132 aa8.87□□□□□ -0.99
CLN3-222ENST00000566083 PRR4Q16378 134 aa8.87□□□□□ -0.99
CLN3-222ENST00000566083 SPINK8P0C7L1 97 aa8.86□□□□□ -0.99
CLN3-222ENST00000566083 RAB5BP61020 215 aa8.86□□□□□ -0.99
CLN3-222ENST00000566083 RPL37AP8A6NKH3 93 aa8.85□□□□□ -0.99
CLN3-222ENST00000566083 SFTA2Q6UW10 78 aa8.85□□□□□ -0.99
CLN3-222ENST00000566083 UBE2AP49459 152 aa8.84□□□□□ -0.99
CLN3-222ENST00000566083 IGLC3P0DOY3 106 aa8.83□□□□□ -1
CLN3-222ENST00000566083 COX17Q14061 63 aa8.83□□□□□ -1
CLN3-222ENST00000566083 TYMSOSQ8TAI1 123 aa8.83□□□□□ -1
CLN3-222ENST00000566083 TMA7Q9Y2S6 64 aaKnown RBP8.83□□□□□ -1
CLN3-222ENST00000566083 IGLV5-39A0A0G2JS06 123 aa8.82□□□□□ -1
CLN3-222ENST00000566083 GAGE10A6NGK3 116 aa8.82□□□□□ -1
CLN3-222ENST00000566083 RPL24P83731 157 aaKnown RBP8.82□□□□□ -1
CLN3-222ENST00000566083 NDUFA6P56556 154 aa8.81□□□□□ -1
CLN3-222ENST00000566083 FAM229BQ4G0N7 80 aa8.81□□□□□ -1
CLN3-222ENST00000566083 TRGC2P03986 189 aa8.8□□□□□ -1
CLN3-222ENST00000566083 LINC00614P0C842 121 aa8.8□□□□□ -1
CLN3-222ENST00000566083 TRAPPC1Q9Y5R8 145 aa8.8□□□□□ -1
CLN3-222ENST00000566083 LPAP08519 4548 aa8.8□□□□□ -1
CLN3-222ENST00000566083 A0A087X002 238 aa8.8□□□□□ -1
CLN3-222ENST00000566083 TSPAN13O95857 204 aa8.8□□□□□ -1
CLN3-222ENST00000566083 HBDP02042 147 aa8.8□□□□□ -1
CLN3-222ENST00000566083 PFN2P35080 140 aa8.8□□□□□ -1
CLN3-222ENST00000566083 CTAG1AP78358 180 aa8.8□□□□□ -1
CLN3-222ENST00000566083 ERG28Q9UKR5 140 aa8.8□□□□□ -1
CLN3-222ENST00000566083 ZNF22P17026 224 aaPredicted RBP8.79□□□□□ -1
CLN3-222ENST00000566083 KRTAP13-1Q8IUC0 172 aa8.79□□□□□ -1
CLN3-222ENST00000566083 A0A0U1RQV1 116 aa8.78□□□□□ -1
CLN3-222ENST00000566083 SND1-IT1Q9HBX3 110 aa8.78□□□□□ -1
CLN3-222ENST00000566083 IGKV2-28A0A075B6P5 120 aa8.77□□□□□ -1.01
CLN3-222ENST00000566083 IGKV2D-28P01615 120 aa8.77□□□□□ -1.01
CLN3-222ENST00000566083 C18orf32Q8TCD1 76 aa8.77□□□□□ -1.01
CLN3-222ENST00000566083 A0A096LNJ9 63 aa8.76□□□□□ -1.01
CLN3-222ENST00000566083 BAGE3Q86Y29 109 aa8.76□□□□□ -1.01
CLN3-222ENST00000566083 IGKV2D-26A0A0A0MRZ7 120 aa8.75□□□□□ -1.01
CLN3-222ENST00000566083 VPREB1P12018 145 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms