RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 PRSS2P07478 247 aa6.57□□□□□ -1.36
VPS39-208ENST00000564994 HERVK_113P63121 156 aa6.57□□□□□ -1.36
VPS39-208ENST00000564994 Q8IZM0 81 aa6.57□□□□□ -1.36
VPS39-208ENST00000564994 ALKBH7Q9BT30 221 aaPredicted RBP6.57□□□□□ -1.36
VPS39-208ENST00000564994 G0S2P27469 103 aa6.56□□□□□ -1.36
VPS39-208ENST00000564994 CKS1BP61024 79 aa6.56□□□□□ -1.36
VPS39-208ENST00000564994 C6orf226Q5I0X4 101 aa6.56□□□□□ -1.36
VPS39-208ENST00000564994 PAPPA-AS1Q5QFB9 102 aa6.56□□□□□ -1.36
VPS39-208ENST00000564994 ERASQ7Z444 233 aa6.56□□□□□ -1.36
VPS39-208ENST00000564994 LINC00469Q8N7U9 141 aa6.56□□□□□ -1.36
VPS39-208ENST00000564994 SCGB3A1Q96QR1 104 aa6.56□□□□□ -1.36
VPS39-208ENST00000564994 GNB1LQ9BYB4 327 aa6.56□□□□□ -1.36
VPS39-208ENST00000564994 H0Y9J4 135 aa6.55□□□□□ -1.36
VPS39-208ENST00000564994 SEC11AP67812 179 aa6.55□□□□□ -1.36
VPS39-208ENST00000564994 C10orf91Q5T1B1 145 aa6.55□□□□□ -1.36
VPS39-208ENST00000564994 COMMD7Q86VX2 200 aa6.55□□□□□ -1.36
VPS39-208ENST00000564994 DIRC1Q969H9 104 aa6.55□□□□□ -1.36
VPS39-208ENST00000564994 GEMIN7Q9H840 131 aaKnown RBP6.55□□□□□ -1.36
VPS39-208ENST00000564994 SMIM1B2RUZ4 78 aa6.54□□□□□ -1.36
VPS39-208ENST00000564994 S100PP25815 95 aa6.54□□□□□ -1.36
VPS39-208ENST00000564994 UBE2BP63146 152 aa6.54□□□□□ -1.36
VPS39-208ENST00000564994 PRR26Q8N8Z3 221 aa6.54□□□□□ -1.36
VPS39-208ENST00000564994 XAGE1AQ9HD64 81 aa6.54□□□□□ -1.36
VPS39-208ENST00000564994 IGLV5-45A0A087WSX0 123 aa6.53□□□□□ -1.36
VPS39-208ENST00000564994 TINCRA0A1B0GVN0 87 aa6.53□□□□□ -1.36
VPS39-208ENST00000564994 F8VRH5 84 aa6.53□□□□□ -1.36
VPS39-208ENST00000564994 KRTAP1-4P0C5Y4 121 aa6.53□□□□□ -1.36
VPS39-208ENST00000564994 MRPL18Q9H0U6 180 aaKnown RBP6.53□□□□□ -1.36
VPS39-208ENST00000564994 CST9LQ9H4G1 147 aa6.52□□□□□ -1.37
VPS39-208ENST00000564994 CARHSP1Q9Y2V2 147 aaKnown RBP6.52□□□□□ -1.37
VPS39-208ENST00000564994 C22orf24Q9Y442 160 aa6.52□□□□□ -1.37
VPS39-208ENST00000564994 A0A096LNJ9 63 aa6.51□□□□□ -1.37
VPS39-208ENST00000564994 CXCL5P42830 114 aa6.51□□□□□ -1.37
VPS39-208ENST00000564994 FABP9Q0Z7S8 132 aa6.51□□□□□ -1.37
VPS39-208ENST00000564994 RHEBQ15382 184 aa6.51□□□□□ -1.37
VPS39-208ENST00000564994 COX19Q49B96 90 aa6.51□□□□□ -1.37
VPS39-208ENST00000564994 PDZD11Q5EBL8 140 aa6.51□□□□□ -1.37
VPS39-208ENST00000564994 COX7B2Q8TF08 81 aa6.51□□□□□ -1.37
VPS39-208ENST00000564994 URB1-AS1Q96HZ7 61 aa6.51□□□□□ -1.37
VPS39-208ENST00000564994 RPS10P5Q9NQ39 176 aa6.51□□□□□ -1.37
VPS39-208ENST00000564994 LINC01549A6NIU2 74 aa6.5□□□□□ -1.37
VPS39-208ENST00000564994 SPINK8P0C7L1 97 aa6.5□□□□□ -1.37
VPS39-208ENST00000564994 PMVKQ15126 192 aa6.5□□□□□ -1.37
VPS39-208ENST00000564994 FA2HQ7L5A8 372 aa6.5□□□□□ -1.37
VPS39-208ENST00000564994 SMCO4Q9NRQ5 59 aa6.49□□□□□ -1.37
VPS39-208ENST00000564994 IGLV1-50A0A075B6I6 118 aa6.48□□□□□ -1.37
VPS39-208ENST00000564994 ZNF861PO60384 105 aa6.48□□□□□ -1.37
VPS39-208ENST00000564994 LBHQ53QV2 105 aaPredicted RBP6.48□□□□□ -1.37
VPS39-208ENST00000564994 MRPL55Q7Z7F7 128 aaKnown RBP6.48□□□□□ -1.37
VPS39-208ENST00000564994 TP73-AS1Q9UF72 201 aa6.48□□□□□ -1.37
VPS39-208ENST00000564994 NUPR1O60356 82 aa6.47□□□□□ -1.37
VPS39-208ENST00000564994 IGLC3P0DOY3 106 aa6.47□□□□□ -1.37
VPS39-208ENST00000564994 RAB5BP61020 215 aa6.47□□□□□ -1.37
VPS39-208ENST00000564994 C18orf32Q8TCD1 76 aa6.47□□□□□ -1.37
VPS39-208ENST00000564994 LINC00167Q96N53 147 aa6.47□□□□□ -1.37
VPS39-208ENST00000564994 TRAPPC1Q9Y5R8 145 aa6.47□□□□□ -1.37
VPS39-208ENST00000564994 PMCHL1Q16048 86 aa6.46□□□□□ -1.38
VPS39-208ENST00000564994 IGLV5-39A0A0G2JS06 123 aa6.45□□□□□ -1.38
VPS39-208ENST00000564994 RPL37AP8A6NKH3 93 aa6.45□□□□□ -1.38
VPS39-208ENST00000564994 LINC00614P0C842 121 aa6.45□□□□□ -1.38
VPS39-208ENST00000564994 ZNF22P17026 224 aaPredicted RBP6.45□□□□□ -1.38
VPS39-208ENST00000564994 IGLV5-37A0A075B6J1 123 aa6.44□□□□□ -1.38
VPS39-208ENST00000564994 GAGE10A6NGK3 116 aa6.44□□□□□ -1.38
VPS39-208ENST00000564994 H3BRM9 83 aa6.44□□□□□ -1.38
VPS39-208ENST00000564994 BCE1O60756 84 aa6.44□□□□□ -1.38
VPS39-208ENST00000564994 HBDP02042 147 aa6.44□□□□□ -1.38
VPS39-208ENST00000564994 NDUFA6P56556 154 aa6.44□□□□□ -1.38
VPS39-208ENST00000564994 SCO1O75880 301 aa6.43□□□□□ -1.38
VPS39-208ENST00000564994 ATP5LO75964 103 aa6.43□□□□□ -1.38
VPS39-208ENST00000564994 APOC3P02656 99 aa6.43□□□□□ -1.38
VPS39-208ENST00000564994 C11orf86A6NJI1 115 aa6.42□□□□□ -1.38
VPS39-208ENST00000564994 PFN2P35080 140 aa6.42□□□□□ -1.38
VPS39-208ENST00000564994 RPL13AP40429 203 aaKnown RBP6.42□□□□□ -1.38
VPS39-208ENST00000564994 RPL28P46779 137 aaKnown RBP6.42□□□□□ -1.38
VPS39-208ENST00000564994 YPEL4Q96NS1 127 aa6.42□□□□□ -1.38
VPS39-208ENST00000564994 A0A087X002 238 aa6.41□□□□□ -1.38
VPS39-208ENST00000564994 BAGE3Q86Y29 109 aa6.41□□□□□ -1.38
VPS39-208ENST00000564994 KRTAP13-1Q8IUC0 172 aa6.41□□□□□ -1.38
VPS39-208ENST00000564994 SNAPINO95295 136 aa6.4□□□□□ -1.38
VPS39-208ENST00000564994 VPREB1P12018 145 aa6.4□□□□□ -1.38
VPS39-208ENST00000564994 SVBPQ8N300 66 aa6.4□□□□□ -1.38
VPS39-208ENST00000564994 NKAPP1Q8N9T2 125 aa6.4□□□□□ -1.38
VPS39-208ENST00000564994 Q8NDZ9 215 aa6.4□□□□□ -1.38
VPS39-208ENST00000564994 ZNF625Q96I27 306 aaPredicted RBP6.4□□□□□ -1.38
VPS39-208ENST00000564994 SND1-IT1Q9HBX3 110 aa6.4□□□□□ -1.38
VPS39-208ENST00000564994 ERG28Q9UKR5 140 aa6.4□□□□□ -1.38
VPS39-208ENST00000564994 IGKV2-28A0A075B6P5 120 aa6.39□□□□□ -1.39
VPS39-208ENST00000564994 IGKV2D-28P01615 120 aa6.39□□□□□ -1.39
VPS39-208ENST00000564994 TMEM170BQ5T4T1 132 aa6.39□□□□□ -1.39
VPS39-208ENST00000564994 COX17Q14061 63 aa6.38□□□□□ -1.39
VPS39-208ENST00000564994 NDUFA5Q16718 116 aa6.38□□□□□ -1.39
VPS39-208ENST00000564994 ANAPC11Q9NYG5 84 aa6.38□□□□□ -1.39
VPS39-208ENST00000564994 CHTOPQ9Y3Y2 248 aaKnown RBP6.38□□□□□ -1.39
VPS39-208ENST00000564994 MUC2Q02817 5179 aa6.37□□□□□ -1.39
VPS39-208ENST00000564994 TMEM223A0PJW6 202 aa6.36□□□□□ -1.39
VPS39-208ENST00000564994 TMEM238C9JI98 176 aa6.36□□□□□ -1.39
VPS39-208ENST00000564994 TSPAN13O95857 204 aa6.36□□□□□ -1.39
VPS39-208ENST00000564994 CRYGAP11844 174 aa6.36□□□□□ -1.39
VPS39-208ENST00000564994 UBE2AP49459 152 aa6.36□□□□□ -1.39
VPS39-208ENST00000564994 PRR4Q16378 134 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms