RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 TRBV30A0A0K0K1B3 111 aa7□□□□□ -1.29
USP3-220ENST00000561381 PRSS47A8MTI9 375 aa7□□□□□ -1.29
USP3-220ENST00000561381 NDUFC2-KCTD14E9PQ53 114 aa7□□□□□ -1.29
USP3-220ENST00000561381 UBE2BP63146 152 aa7□□□□□ -1.29
USP3-220ENST00000561381 TEX43Q6ZNM6 134 aa7□□□□□ -1.29
USP3-220ENST00000561381 LINC00173Q6ZV60 143 aa7□□□□□ -1.29
USP3-220ENST00000561381 C2orf66Q6UXQ4 117 aa6.99□□□□□ -1.29
USP3-220ENST00000561381 PACRGQ96M98 296 aaPredicted RBP6.99□□□□□ -1.29
USP3-220ENST00000561381 MAP1LC3AQ9H492 121 aa6.99□□□□□ -1.29
USP3-220ENST00000561381 AMELXQ99217 191 aa6.98□□□□□ -1.29
USP3-220ENST00000561381 C2orf88Q9BSF0 95 aa6.98□□□□□ -1.29
USP3-220ENST00000561381 IGLV1-50A0A075B6I6 118 aa6.97□□□□□ -1.29
USP3-220ENST00000561381 LINC01561Q8N1V8 128 aa6.97□□□□□ -1.29
USP3-220ENST00000561381 LINC00469Q8N7U9 141 aa6.97□□□□□ -1.29
USP3-220ENST00000561381 Q8N8P6 123 aa6.97□□□□□ -1.29
USP3-220ENST00000561381 TOMM7Q9P0U1 55 aa6.97□□□□□ -1.29
USP3-220ENST00000561381 CYSLTR1Q9Y271 337 aa6.97□□□□□ -1.29
USP3-220ENST00000561381 LAMTOR2Q9Y2Q5 125 aa6.97□□□□□ -1.29
USP3-220ENST00000561381 IGIPA6NJ69 53 aa6.96□□□□□ -1.3
USP3-220ENST00000561381 Q6ZN92 141 aa6.96□□□□□ -1.3
USP3-220ENST00000561381 VCX2Q9H322 139 aa6.96□□□□□ -1.3
USP3-220ENST00000561381 PRSS2P07478 247 aa6.95□□□□□ -1.3
USP3-220ENST00000561381 CKS1BP61024 79 aa6.95□□□□□ -1.3
USP3-220ENST00000561381 XAGE1AQ9HD64 81 aa6.95□□□□□ -1.3
USP3-220ENST00000561381 ORMDL2Q53FV1 153 aa6.94□□□□□ -1.3
USP3-220ENST00000561381 C6orf226Q5I0X4 101 aa6.94□□□□□ -1.3
USP3-220ENST00000561381 ALKBH7Q9BT30 221 aaPredicted RBP6.94□□□□□ -1.3
USP3-220ENST00000561381 CDKN2A-AS1Q9UH64 79 aa6.94□□□□□ -1.3
USP3-220ENST00000561381 C22orf24Q9Y442 160 aa6.94□□□□□ -1.3
USP3-220ENST00000561381 ZNF861PO60384 105 aa6.93□□□□□ -1.3
USP3-220ENST00000561381 MT-ND4LP03901 98 aa6.93□□□□□ -1.3
USP3-220ENST00000561381 KRTAP5-3Q6L8H2 238 aa6.93□□□□□ -1.3
USP3-220ENST00000561381 FAM19A3Q7Z5A8 133 aa6.93□□□□□ -1.3
USP3-220ENST00000561381 Q8IZM0 81 aa6.93□□□□□ -1.3
USP3-220ENST00000561381 ANAPC16Q96DE5 110 aa6.93□□□□□ -1.3
USP3-220ENST00000561381 NPSP0C0P6 89 aa6.92□□□□□ -1.3
USP3-220ENST00000561381 PNRC1Q12796 327 aaPredicted RBP6.92□□□□□ -1.3
USP3-220ENST00000561381 PRR4Q16378 134 aa6.92□□□□□ -1.3
USP3-220ENST00000561381 RPL13AP40429 203 aaKnown RBP6.91□□□□□ -1.3
USP3-220ENST00000561381 HERVK_113P63121 156 aa6.91□□□□□ -1.3
USP3-220ENST00000561381 KIAA1644Q3SXP7 199 aa6.91□□□□□ -1.3
USP3-220ENST00000561381 CTDSP1Q9GZU7 261 aa6.91□□□□□ -1.3
USP3-220ENST00000561381 NXT2Q9NPJ8 142 aaKnown RBP6.91□□□□□ -1.3
USP3-220ENST00000561381 F8VRH5 84 aa6.9□□□□□ -1.3
USP3-220ENST00000561381 K7EMI3 77 aa6.9□□□□□ -1.3
USP3-220ENST00000561381 TOMM6Q96B49 74 aa6.9□□□□□ -1.3
USP3-220ENST00000561381 GEMIN7Q9H840 131 aaKnown RBP6.9□□□□□ -1.3
USP3-220ENST00000561381 NUPR1O60356 82 aa6.89□□□□□ -1.31
USP3-220ENST00000561381 ADCYAP1P18509 176 aa6.89□□□□□ -1.31
USP3-220ENST00000561381 SEC11AP67812 179 aa6.89□□□□□ -1.31
USP3-220ENST00000561381 LBHQ53QV2 105 aaPredicted RBP6.89□□□□□ -1.31
USP3-220ENST00000561381 MRPL55Q7Z7F7 128 aaKnown RBP6.89□□□□□ -1.31
USP3-220ENST00000561381 TIMM17AQ99595 171 aa6.89□□□□□ -1.31
USP3-220ENST00000561381 CARHSP1Q9Y2V2 147 aaKnown RBP6.89□□□□□ -1.31
USP3-220ENST00000561381 A0A087X002 238 aa6.88□□□□□ -1.31
USP3-220ENST00000561381 RPL37AP8A6NKH3 93 aa6.88□□□□□ -1.31
USP3-220ENST00000561381 SMIM1B2RUZ4 78 aa6.88□□□□□ -1.31
USP3-220ENST00000561381 TSPAN13O95857 204 aa6.88□□□□□ -1.31
USP3-220ENST00000561381 PAPPA-AS1Q5QFB9 102 aa6.88□□□□□ -1.31
USP3-220ENST00000561381 BCE1O60756 84 aa6.87□□□□□ -1.31
USP3-220ENST00000561381 CXCL5P42830 114 aa6.87□□□□□ -1.31
USP3-220ENST00000561381 ERASQ7Z444 233 aa6.87□□□□□ -1.31
USP3-220ENST00000561381 LINC00167Q96N53 147 aa6.87□□□□□ -1.31
USP3-220ENST00000561381 SCGB3A1Q96QR1 104 aa6.87□□□□□ -1.31
USP3-220ENST00000561381 TP73-AS1Q9UF72 201 aa6.87□□□□□ -1.31
USP3-220ENST00000561381 GAGE10A6NGK3 116 aa6.86□□□□□ -1.31
USP3-220ENST00000561381 COX7B2Q8TF08 81 aa6.86□□□□□ -1.31
USP3-220ENST00000561381 ANAPC11Q9NYG5 84 aa6.86□□□□□ -1.31
USP3-220ENST00000561381 IGLV5-45A0A087WSX0 123 aa6.85□□□□□ -1.31
USP3-220ENST00000561381 TINCRA0A1B0GVN0 87 aa6.85□□□□□ -1.31
USP3-220ENST00000561381 SPINK8P0C7L1 97 aa6.85□□□□□ -1.31
USP3-220ENST00000561381 G0S2P27469 103 aa6.85□□□□□ -1.31
USP3-220ENST00000561381 RPL28P46779 137 aaKnown RBP6.85□□□□□ -1.31
USP3-220ENST00000561381 RAB5BP61020 215 aa6.85□□□□□ -1.31
USP3-220ENST00000561381 RAB14P61106 215 aa6.85□□□□□ -1.31
USP3-220ENST00000561381 PDZD11Q5EBL8 140 aa6.85□□□□□ -1.31
USP3-220ENST00000561381 MUC2Q02817 5179 aa6.85□□□□□ -1.31
USP3-220ENST00000561381 ANKRD39Q53RE8 183 aa6.84□□□□□ -1.31
USP3-220ENST00000561381 CST9LQ9H4G1 147 aa6.84□□□□□ -1.31
USP3-220ENST00000561381 LINC01546A6NGU7 62 aa6.83□□□□□ -1.32
USP3-220ENST00000561381 SCO1O75880 301 aa6.83□□□□□ -1.32
USP3-220ENST00000561381 CRYGAP11844 174 aa6.83□□□□□ -1.32
USP3-220ENST00000561381 TYMSOSQ8TAI1 123 aa6.83□□□□□ -1.32
USP3-220ENST00000561381 KRTAP13-2Q52LG2 175 aa6.82□□□□□ -1.32
USP3-220ENST00000561381 KRTAP13-1Q8IUC0 172 aa6.82□□□□□ -1.32
USP3-220ENST00000561381 IGLV5-37A0A075B6J1 123 aa6.81□□□□□ -1.32
USP3-220ENST00000561381 CLLU1Q5K131 121 aa6.81□□□□□ -1.32
USP3-220ENST00000561381 TRAV9-1A0A075B6T8 112 aa6.8□□□□□ -1.32
USP3-220ENST00000561381 TMEM218A2RU14 115 aa6.8□□□□□ -1.32
USP3-220ENST00000561381 UBE2AP49459 152 aa6.8□□□□□ -1.32
USP3-220ENST00000561381 PMVKQ15126 192 aa6.8□□□□□ -1.32
USP3-220ENST00000561381 NKAPP1Q8N9T2 125 aa6.8□□□□□ -1.32
USP3-220ENST00000561381 GNB1LQ9BYB4 327 aa6.8□□□□□ -1.32
USP3-220ENST00000561381 IGKV2-28A0A075B6P5 120 aa6.79□□□□□ -1.32
USP3-220ENST00000561381 IGKV2D-28P01615 120 aa6.79□□□□□ -1.32
USP3-220ENST00000561381 PFN2P35080 140 aa6.79□□□□□ -1.32
USP3-220ENST00000561381 FA2HQ7L5A8 372 aa6.79□□□□□ -1.32
USP3-220ENST00000561381 ATP5LO75964 103 aa6.78□□□□□ -1.32
USP3-220ENST00000561381 PRLHP81277 87 aa6.78□□□□□ -1.32
USP3-220ENST00000561381 RETNLBQ9BQ08 111 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms