RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 KRTAP21-3Q3LHN1 58 aa8.71□□□□□ -1.01
SNX1-211ENST00000560829 LINC00308Q8TCZ7 52 aa8.71□□□□□ -1.01
SNX1-211ENST00000560829 COPS9Q8WXC6 57 aa8.71□□□□□ -1.01
SNX1-211ENST00000560829 UBE2WQ96B02 151 aa8.71□□□□□ -1.01
SNX1-211ENST00000560829 NHLRC4P0CG21 123 aaPredicted RBP8.7□□□□□ -1.02
SNX1-211ENST00000560829 DNAH10OSP0CZ25 163 aa8.7□□□□□ -1.02
SNX1-211ENST00000560829 FABP2P12104 132 aa8.7□□□□□ -1.02
SNX1-211ENST00000560829 MALP21145 153 aa8.7□□□□□ -1.02
SNX1-211ENST00000560829 DAND5Q8N907 189 aa8.7□□□□□ -1.02
SNX1-211ENST00000560829 PGPEP1Q9NXJ5 209 aa8.7□□□□□ -1.02
SNX1-211ENST00000560829 PRO1854Q9UHT4 67 aa8.7□□□□□ -1.02
SNX1-211ENST00000560829 KLK5Q9Y337 293 aaPredicted RBP8.7□□□□□ -1.02
SNX1-211ENST00000560829 DYNC2H1Q8NCM8 4307 aaKnown RBP8.7□□□□□ -1.02
SNX1-211ENST00000560829 CXCL5P42830 114 aa8.7□□□□□ -1.02
SNX1-211ENST00000560829 K7EP34 96 aa8.69□□□□□ -1.02
SNX1-211ENST00000560829 TSPAN13O95857 204 aa8.69□□□□□ -1.02
SNX1-211ENST00000560829 LINC00588Q9Y4M8 146 aa8.69□□□□□ -1.02
SNX1-211ENST00000560829 GAGE10A6NGK3 116 aa8.68□□□□□ -1.02
SNX1-211ENST00000560829 KRTAP26-1Q6PEX3 210 aa8.68□□□□□ -1.02
SNX1-211ENST00000560829 GTF2H5Q6ZYL4 71 aa8.68□□□□□ -1.02
SNX1-211ENST00000560829 A0A0U1RRA0 63 aa8.68□□□□□ -1.02
SNX1-211ENST00000560829 CCL18P55774 89 aa8.68□□□□□ -1.02
SNX1-211ENST00000560829 NPC2P61916 151 aa8.68□□□□□ -1.02
SNX1-211ENST00000560829 SOSTDC1Q6X4U4 206 aa8.68□□□□□ -1.02
SNX1-211ENST00000560829 UPK3BQ9BT76 320 aa8.68□□□□□ -1.02
SNX1-211ENST00000560829 SPCS1Q9Y6A9 102 aa8.68□□□□□ -1.02
SNX1-211ENST00000560829 CFAP161Q6P656 301 aa8.67□□□□□ -1.02
SNX1-211ENST00000560829 ERG28Q9UKR5 140 aa8.67□□□□□ -1.02
SNX1-211ENST00000560829 CKS1BP61024 79 aa8.66□□□□□ -1.02
SNX1-211ENST00000560829 MIR7-3HGQ8N6C7 128 aa8.66□□□□□ -1.02
SNX1-211ENST00000560829 DNAH1Q9P2D7 4330 aa8.66□□□□□ -1.02
SNX1-211ENST00000560829 C2orf82Q6UX34 121 aa8.66□□□□□ -1.02
SNX1-211ENST00000560829 LINC00158P58513 81 aa8.65□□□□□ -1.02
SNX1-211ENST00000560829 SPAG11BQ08648 103 aa8.65□□□□□ -1.02
SNX1-211ENST00000560829 COX17Q14061 63 aa8.64□□□□□ -1.03
SNX1-211ENST00000560829 PFN2P35080 140 aa8.63□□□□□ -1.03
SNX1-211ENST00000560829 LYRM7Q5U5X0 104 aa8.63□□□□□ -1.03
SNX1-211ENST00000560829 C1orf43Q9BWL3 253 aa8.63□□□□□ -1.03
SNX1-211ENST00000560829 COL7A1Q02388 2944 aa8.63□□□□□ -1.03
SNX1-211ENST00000560829 PRKDCP78527 4128 aaKnown RBP8.63□□□□□ -1.03
SNX1-211ENST00000560829 STAB2Q8WWQ8 2551 aa8.62□□□□□ -1.03
SNX1-211ENST00000560829 LOC107984156A0A0G2JMH3 177 aa8.62□□□□□ -1.03
SNX1-211ENST00000560829 ARL17AQ8IVW1 177 aa8.62□□□□□ -1.03
SNX1-211ENST00000560829 NTN5Q8WTR8 489 aaPredicted RBP8.62□□□□□ -1.03
SNX1-211ENST00000560829 APLNQ9ULZ1 77 aa8.62□□□□□ -1.03
SNX1-211ENST00000560829 GVQW2A0A096LPI5 108 aaPredicted RBP8.61□□□□□ -1.03
SNX1-211ENST00000560829 MUC7Q8TAX7 377 aa8.61□□□□□ -1.03
SNX1-211ENST00000560829 C6orf223Q8N319 242 aa8.6□□□□□ -1.03
SNX1-211ENST00000560829 SND1-IT1Q9HBX3 110 aa8.6□□□□□ -1.03
SNX1-211ENST00000560829 IGKV2D-24A0A075B6R9 120 aa8.6□□□□□ -1.03
SNX1-211ENST00000560829 TRBV30A0A0K0K1B3 111 aa8.6□□□□□ -1.03
SNX1-211ENST00000560829 C10orf25Q5T742 122 aa8.6□□□□□ -1.03
SNX1-211ENST00000560829 UNQ6190/PRO20217Q6UXQ8 127 aa8.6□□□□□ -1.03
SNX1-211ENST00000560829 RPL13AP40429 203 aaKnown RBP8.59□□□□□ -1.03
SNX1-211ENST00000560829 PLECQ15149 4684 aaKnown RBP8.59□□□□□ -1.03
SNX1-211ENST00000560829 C15orf56Q8N910 161 aa8.59□□□□□ -1.03
SNX1-211ENST00000560829 TRBV20-1A0A075B6N2 111 aa8.58□□□□□ -1.04
SNX1-211ENST00000560829 H7C2G1 150 aa8.58□□□□□ -1.04
SNX1-211ENST00000560829 Q1RN00 199 aa8.58□□□□□ -1.04
SNX1-211ENST00000560829 DNAH7Q8WXX0 4024 aa8.58□□□□□ -1.04
SNX1-211ENST00000560829 MEGF8Q7Z7M0 2845 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 NUPR2A6NF83 97 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 PSMB2P49721 201 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 C2orf48Q96LS8 159 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 IGKV2-28A0A075B6P5 120 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 TRAV13-2A0A0B4J235 113 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 F8WDY8 70 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 H3BMG7 143 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 ZNF561-AS1K7EIQ3 104 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 IGKV2D-28P01615 120 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 LINC00526Q96FQ7 95 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 Q9HAA7 133 aa8.57□□□□□ -1.04
SNX1-211ENST00000560829 TRIAP1O43715 76 aa8.56□□□□□ -1.04
SNX1-211ENST00000560829 C9orf116Q5BN46 136 aaPredicted RBP8.56□□□□□ -1.04
SNX1-211ENST00000560829 RMI2Q96E14 147 aa8.56□□□□□ -1.04
SNX1-211ENST00000560829 TCL1BO95988 128 aa8.55□□□□□ -1.04
SNX1-211ENST00000560829 SCGB1C2P0DMR2 95 aa8.55□□□□□ -1.04
SNX1-211ENST00000560829 C6orf48Q9UBA6 75 aa8.55□□□□□ -1.04
SNX1-211ENST00000560829 NDUFC2O95298 119 aa8.55□□□□□ -1.04
SNX1-211ENST00000560829 HIGD2BQ4VC39 106 aa8.55□□□□□ -1.04
SNX1-211ENST00000560829 LINC00337Q8N6G1 96 aa8.55□□□□□ -1.04
SNX1-211ENST00000560829 F8W1H4 67 aa8.54□□□□□ -1.04
SNX1-211ENST00000560829 CAMK2N2Q96S95 79 aa8.54□□□□□ -1.04
SNX1-211ENST00000560829 PRO0461Q9UI25 63 aa8.54□□□□□ -1.04
SNX1-211ENST00000560829 CSMD3Q7Z407 3707 aa8.54□□□□□ -1.04
SNX1-211ENST00000560829 COX6CP09669 75 aa8.53□□□□□ -1.04
SNX1-211ENST00000560829 LYSTQ99698 3801 aa8.52□□□□□ -1.04
SNX1-211ENST00000560829 UBE2DNLQ8IWF7 75 aa8.52□□□□□ -1.05
SNX1-211ENST00000560829 STARD9Q9P2P6 4700 aa8.52□□□□□ -1.05
SNX1-211ENST00000560829 RPL28P46779 137 aaKnown RBP8.51□□□□□ -1.05
SNX1-211ENST00000560829 Q6ZRU5 148 aa8.51□□□□□ -1.05
SNX1-211ENST00000560829 KRTAP1-5Q9BYS1 174 aa8.51□□□□□ -1.05
SNX1-211ENST00000560829 ATXN8Q156A1 80 aa8.5□□□□□ -1.05
SNX1-211ENST00000560829 USP17L23D6RBM5 183 aa8.49□□□□□ -1.05
SNX1-211ENST00000560829 SYCNQ0VAF6 134 aa8.49□□□□□ -1.05
SNX1-211ENST00000560829 CASC10Q5T4H9 136 aa8.49□□□□□ -1.05
SNX1-211ENST00000560829 LST1O00453 97 aa8.48□□□□□ -1.05
SNX1-211ENST00000560829 WFDC2Q14508 124 aa8.48□□□□□ -1.05
SNX1-211ENST00000560829 RNF151Q2KHN1 245 aa8.48□□□□□ -1.05
SNX1-211ENST00000560829 Q8NDZ9 215 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 104.1 ms