RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 KLK5Q9Y337 293 aaPredicted RBP8.55□□□□□ -1.04
USP3-213ENST00000559711 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.54□□□□□ -1.04
USP3-213ENST00000559711 MEIG1Q5JSS6 88 aa8.54□□□□□ -1.04
USP3-213ENST00000559711 PPDPFQ9H3Y8 114 aa8.54□□□□□ -1.04
USP3-213ENST00000559711 IBA57-AS1B1ANH7 110 aa8.53□□□□□ -1.04
USP3-213ENST00000559711 VAMP3Q15836 100 aa8.53□□□□□ -1.04
USP3-213ENST00000559711 KRTAP26-1Q6PEX3 210 aa8.53□□□□□ -1.04
USP3-213ENST00000559711 DAND5Q8N907 189 aa8.53□□□□□ -1.04
USP3-213ENST00000559711 A0A0B4J2C4 111 aa8.53□□□□□ -1.04
USP3-213ENST00000559711 A0A1W2PPM0 123 aa8.53□□□□□ -1.04
USP3-213ENST00000559711 APOMO95445 188 aa8.53□□□□□ -1.04
USP3-213ENST00000559711 CXCL5P42830 114 aa8.53□□□□□ -1.04
USP3-213ENST00000559711 LINC00308Q8TCZ7 52 aa8.53□□□□□ -1.04
USP3-213ENST00000559711 COPS9Q8WXC6 57 aa8.53□□□□□ -1.04
USP3-213ENST00000559711 NAA38Q9BRA0 125 aaKnown RBP8.53□□□□□ -1.04
USP3-213ENST00000559711 UPK3BQ9BT76 320 aa8.53□□□□□ -1.04
USP3-213ENST00000559711 A0A0U1RRA0 63 aa8.52□□□□□ -1.05
USP3-213ENST00000559711 EIF4EBP3O60516 100 aaPredicted RBP8.52□□□□□ -1.05
USP3-213ENST00000559711 UBE2V1Q13404 147 aa8.52□□□□□ -1.05
USP3-213ENST00000559711 PGPEP1Q9NXJ5 209 aa8.51□□□□□ -1.05
USP3-213ENST00000559711 PRO1854Q9UHT4 67 aa8.51□□□□□ -1.05
USP3-213ENST00000559711 CKS1BP61024 79 aa8.5□□□□□ -1.05
USP3-213ENST00000559711 NPC2P61916 151 aa8.5□□□□□ -1.05
USP3-213ENST00000559711 CFAP161Q6P656 301 aa8.5□□□□□ -1.05
USP3-213ENST00000559711 C2orf82Q6UX34 121 aa8.5□□□□□ -1.05
USP3-213ENST00000559711 SOSTDC1Q6X4U4 206 aa8.5□□□□□ -1.05
USP3-213ENST00000559711 FABP2P12104 132 aa8.49□□□□□ -1.05
USP3-213ENST00000559711 APLNQ9ULZ1 77 aa8.49□□□□□ -1.05
USP3-213ENST00000559711 DYNC2H1Q8NCM8 4307 aaKnown RBP8.49□□□□□ -1.05
USP3-213ENST00000559711 TSPAN13O95857 204 aa8.49□□□□□ -1.05
USP3-213ENST00000559711 LINC00158P58513 81 aa8.49□□□□□ -1.05
USP3-213ENST00000559711 MIR7-3HGQ8N6C7 128 aa8.49□□□□□ -1.05
USP3-213ENST00000559711 ERG28Q9UKR5 140 aa8.49□□□□□ -1.05
USP3-213ENST00000559711 GAGE10A6NGK3 116 aa8.48□□□□□ -1.05
USP3-213ENST00000559711 SPAG11BQ08648 103 aa8.48□□□□□ -1.05
USP3-213ENST00000559711 C1orf43Q9BWL3 253 aa8.48□□□□□ -1.05
USP3-213ENST00000559711 PRKDCP78527 4128 aaKnown RBP8.48□□□□□ -1.05
USP3-213ENST00000559711 K7EP34 96 aa8.47□□□□□ -1.05
USP3-213ENST00000559711 PFN2P35080 140 aa8.46□□□□□ -1.05
USP3-213ENST00000559711 COX17Q14061 63 aa8.46□□□□□ -1.05
USP3-213ENST00000559711 GTF2H5Q6ZYL4 71 aa8.46□□□□□ -1.05
USP3-213ENST00000559711 C6orf223Q8N319 242 aa8.46□□□□□ -1.06
USP3-213ENST00000559711 NTN5Q8WTR8 489 aaPredicted RBP8.46□□□□□ -1.06
USP3-213ENST00000559711 SPCS1Q9Y6A9 102 aa8.46□□□□□ -1.06
USP3-213ENST00000559711 IGKV2D-24A0A075B6R9 120 aa8.45□□□□□ -1.06
USP3-213ENST00000559711 NUPR2A6NF83 97 aa8.45□□□□□ -1.06
USP3-213ENST00000559711 GVQW2A0A096LPI5 108 aaPredicted RBP8.44□□□□□ -1.06
USP3-213ENST00000559711 LOC107984156A0A0G2JMH3 177 aa8.44□□□□□ -1.06
USP3-213ENST00000559711 C10orf25Q5T742 122 aa8.44□□□□□ -1.06
USP3-213ENST00000559711 UNQ6190/PRO20217Q6UXQ8 127 aa8.44□□□□□ -1.06
USP3-213ENST00000559711 ARL17AQ8IVW1 177 aa8.44□□□□□ -1.06
USP3-213ENST00000559711 C15orf56Q8N910 161 aa8.43□□□□□ -1.06
USP3-213ENST00000559711 LINC00526Q96FQ7 95 aa8.43□□□□□ -1.06
USP3-213ENST00000559711 MUC7Q8TAX7 377 aa8.43□□□□□ -1.06
USP3-213ENST00000559711 Q9HAA7 133 aa8.43□□□□□ -1.06
USP3-213ENST00000559711 ZNF561-AS1K7EIQ3 104 aa8.42□□□□□ -1.06
USP3-213ENST00000559711 C9orf116Q5BN46 136 aaPredicted RBP8.42□□□□□ -1.06
USP3-213ENST00000559711 RMI2Q96E14 147 aa8.42□□□□□ -1.06
USP3-213ENST00000559711 C2orf48Q96LS8 159 aa8.42□□□□□ -1.06
USP3-213ENST00000559711 SND1-IT1Q9HBX3 110 aa8.42□□□□□ -1.06
USP3-213ENST00000559711 F8WDY8 70 aa8.41□□□□□ -1.06
USP3-213ENST00000559711 LYRM7Q5U5X0 104 aa8.41□□□□□ -1.06
USP3-213ENST00000559711 TRBV30A0A0K0K1B3 111 aa8.4□□□□□ -1.06
USP3-213ENST00000559711 H7C2G1 150 aa8.4□□□□□ -1.06
USP3-213ENST00000559711 RPL13AP40429 203 aaKnown RBP8.4□□□□□ -1.06
USP3-213ENST00000559711 HIGD2BQ4VC39 106 aa8.4□□□□□ -1.06
USP3-213ENST00000559711 DNAH1Q9P2D7 4330 aa8.4□□□□□ -1.06
USP3-213ENST00000559711 IGKV2-28A0A075B6P5 120 aa8.4□□□□□ -1.07
USP3-213ENST00000559711 IGKV2D-28P01615 120 aa8.4□□□□□ -1.07
USP3-213ENST00000559711 Q1RN00 199 aa8.4□□□□□ -1.07
USP3-213ENST00000559711 C6orf48Q9UBA6 75 aa8.4□□□□□ -1.07
USP3-213ENST00000559711 CSMD3Q7Z407 3707 aa8.39□□□□□ -1.07
USP3-213ENST00000559711 TRAV13-2A0A0B4J235 113 aa8.39□□□□□ -1.07
USP3-213ENST00000559711 UBE2DNLQ8IWF7 75 aa8.39□□□□□ -1.07
USP3-213ENST00000559711 DNAH7Q8WXX0 4024 aa8.39□□□□□ -1.07
USP3-213ENST00000559711 FBN3Q75N90 2809 aa8.39□□□□□ -1.07
USP3-213ENST00000559711 TRBV20-1A0A075B6N2 111 aa8.38□□□□□ -1.07
USP3-213ENST00000559711 SCGB1C2P0DMR2 95 aa8.38□□□□□ -1.07
USP3-213ENST00000559711 PSMB2P49721 201 aa8.38□□□□□ -1.07
USP3-213ENST00000559711 CAMK2N2Q96S95 79 aa8.38□□□□□ -1.07
USP3-213ENST00000559711 TRIAP1O43715 76 aa8.37□□□□□ -1.07
USP3-213ENST00000559711 LINC00337Q8N6G1 96 aa8.37□□□□□ -1.07
USP3-213ENST00000559711 PLECQ15149 4684 aaKnown RBP8.37□□□□□ -1.07
USP3-213ENST00000559711 TENM2Q9NT68 2774 aa8.37□□□□□ -1.07
USP3-213ENST00000559711 H3BMG7 143 aa8.37□□□□□ -1.07
USP3-213ENST00000559711 NDUFC2O95298 119 aa8.37□□□□□ -1.07
USP3-213ENST00000559711 Q6ZRU5 148 aa8.37□□□□□ -1.07
USP3-213ENST00000559711 KRTAP1-5Q9BYS1 174 aa8.37□□□□□ -1.07
USP3-213ENST00000559711 TCL1BO95988 128 aa8.36□□□□□ -1.07
USP3-213ENST00000559711 CASC10Q5T4H9 136 aa8.36□□□□□ -1.07
USP3-213ENST00000559711 USP17L23D6RBM5 183 aa8.34□□□□□ -1.07
USP3-213ENST00000559711 COX6CP09669 75 aa8.34□□□□□ -1.07
USP3-213ENST00000559711 SYCNQ0VAF6 134 aa8.34□□□□□ -1.07
USP3-213ENST00000559711 F8W1H4 67 aa8.34□□□□□ -1.08
USP3-213ENST00000559711 RNF151Q2KHN1 245 aa8.33□□□□□ -1.08
USP3-213ENST00000559711 PRO0461Q9UI25 63 aa8.33□□□□□ -1.08
USP3-213ENST00000559711 NDUFC2-KCTD14E9PQ53 114 aa8.32□□□□□ -1.08
USP3-213ENST00000559711 RPL28P46779 137 aaKnown RBP8.32□□□□□ -1.08
USP3-213ENST00000559711 LYSTQ99698 3801 aa8.32□□□□□ -1.08
USP3-213ENST00000559711 SLPIP03973 132 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms