RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CD164L2Q6UWJ8 174 aa11.55□□□□□ -0.56
LDLR-206ENST00000557958 C5orf38Q86SI9 138 aa11.55□□□□□ -0.56
LDLR-206ENST00000557958 TRBV20-1A0A075B6N2 111 aa11.54□□□□□ -0.56
LDLR-206ENST00000557958 COX7A2LO14548 114 aa11.52□□□□□ -0.57
LDLR-206ENST00000557958 SMCPP49901 116 aaPredicted RBP11.52□□□□□ -0.57
LDLR-206ENST00000557958 CHCHD10Q8WYQ3 142 aaPredicted RBP11.52□□□□□ -0.57
LDLR-206ENST00000557958 LOC107984156A0A0G2JMH3 177 aa11.51□□□□□ -0.57
LDLR-206ENST00000557958 ARL17AQ8IVW1 177 aa11.51□□□□□ -0.57
LDLR-206ENST00000557958 MTURNQ8N3F0 131 aa11.51□□□□□ -0.57
LDLR-206ENST00000557958 TENM3Q9P273 2699 aa11.51□□□□□ -0.57
LDLR-206ENST00000557958 FOXI1Q12951 378 aa11.51□□□□□ -0.57
LDLR-206ENST00000557958 C6orf226Q5I0X4 101 aa11.51□□□□□ -0.57
LDLR-206ENST00000557958 TRAV10A0A0B4J240 114 aa11.5□□□□□ -0.57
LDLR-206ENST00000557958 PSMB2P49721 201 aa11.5□□□□□ -0.57
LDLR-206ENST00000557958 Q8IZM0 81 aa11.5□□□□□ -0.57
LDLR-206ENST00000557958 PPDPFQ9H3Y8 114 aa11.5□□□□□ -0.57
LDLR-206ENST00000557958 CRPP02741 224 aa11.49□□□□□ -0.57
LDLR-206ENST00000557958 MALP21145 153 aa11.49□□□□□ -0.57
LDLR-206ENST00000557958 PRR34Q9NV39 138 aa11.49□□□□□ -0.57
LDLR-206ENST00000557958 ERG28Q9UKR5 140 aa11.49□□□□□ -0.57
LDLR-206ENST00000557958 NHLRC4P0CG21 123 aaPredicted RBP11.49□□□□□ -0.57
LDLR-206ENST00000557958 Q8N3U1 123 aa11.49□□□□□ -0.57
LDLR-206ENST00000557958 LINC00308Q8TCZ7 52 aa11.49□□□□□ -0.57
LDLR-206ENST00000557958 M0QXV9 152 aa11.48□□□□□ -0.57
LDLR-206ENST00000557958 NPC2P61916 151 aa11.48□□□□□ -0.57
LDLR-206ENST00000557958 DAND5Q8N907 189 aa11.48□□□□□ -0.57
LDLR-206ENST00000557958 C15orf53Q8NAA6 179 aa11.48□□□□□ -0.57
LDLR-206ENST00000557958 KLK12Q9UKR0 248 aa11.48□□□□□ -0.57
LDLR-206ENST00000557958 IGLV10-54A0A075B6I4 117 aa11.47□□□□□ -0.57
LDLR-206ENST00000557958 IBA57-AS1B1ANH7 110 aa11.47□□□□□ -0.57
LDLR-206ENST00000557958 TCL1BO95988 128 aa11.47□□□□□ -0.57
LDLR-206ENST00000557958 CXCL5P42830 114 aa11.47□□□□□ -0.57
LDLR-206ENST00000557958 TEN1Q86WV5 123 aa11.47□□□□□ -0.57
LDLR-206ENST00000557958 TRAV8-4A0A0B4J246 113 aa11.46□□□□□ -0.57
LDLR-206ENST00000557958 IGHV3-33P01772 117 aa11.46□□□□□ -0.57
LDLR-206ENST00000557958 PPDPFLQ8WWR9 84 aa11.46□□□□□ -0.57
LDLR-206ENST00000557958 HUWE1Q7Z6Z7 4374 aaKnown RBP11.46□□□□□ -0.57
LDLR-206ENST00000557958 A0A0U1RRA0 63 aa11.46□□□□□ -0.58
LDLR-206ENST00000557958 Q1RN00 199 aa11.46□□□□□ -0.58
LDLR-206ENST00000557958 CFAP161Q6P656 301 aa11.46□□□□□ -0.58
LDLR-206ENST00000557958 CKS1BP61024 79 aa11.45□□□□□ -0.58
LDLR-206ENST00000557958 LINC00158P58513 81 aa11.44□□□□□ -0.58
LDLR-206ENST00000557958 WFDC10BQ8IUB3 73 aa11.44□□□□□ -0.58
LDLR-206ENST00000557958 SCGB1C2P0DMR2 95 aa11.43□□□□□ -0.58
LDLR-206ENST00000557958 ESRGQ1W209 222 aa11.43□□□□□ -0.58
LDLR-206ENST00000557958 EIF4EBP3O60516 100 aaPredicted RBP11.42□□□□□ -0.58
LDLR-206ENST00000557958 UBE2WQ96B02 151 aa11.42□□□□□ -0.58
LDLR-206ENST00000557958 H7C2G1 150 aa11.42□□□□□ -0.58
LDLR-206ENST00000557958 ENHOQ6UWT2 76 aa11.42□□□□□ -0.58
LDLR-206ENST00000557958 MIR7-3HGQ8N6C7 128 aa11.42□□□□□ -0.58
LDLR-206ENST00000557958 CDIP1Q9H305 208 aa11.42□□□□□ -0.58
LDLR-206ENST00000557958 KLK5Q9Y337 293 aaPredicted RBP11.41□□□□□ -0.58
LDLR-206ENST00000557958 MEGF8Q7Z7M0 2845 aa11.41□□□□□ -0.58
LDLR-206ENST00000557958 LINC01556Q5JQF7 62 aa11.4□□□□□ -0.58
LDLR-206ENST00000557958 CARD19Q96LW7 228 aa11.4□□□□□ -0.58
LDLR-206ENST00000557958 LINC01600Q96MT4 127 aa11.4□□□□□ -0.58
LDLR-206ENST00000557958 COX6CP09669 75 aa11.4□□□□□ -0.59
LDLR-206ENST00000557958 DNAH9Q9NYC9 4486 aa11.39□□□□□ -0.59
LDLR-206ENST00000557958 COL7A1Q02388 2944 aa11.39□□□□□ -0.59
LDLR-206ENST00000557958 TRBV30A0A0K0K1B3 111 aa11.39□□□□□ -0.59
LDLR-206ENST00000557958 A0A1B0GV72 72 aa11.38□□□□□ -0.59
LDLR-206ENST00000557958 PFN2P35080 140 aa11.38□□□□□ -0.59
LDLR-206ENST00000557958 RPL13AP40429 203 aaKnown RBP11.38□□□□□ -0.59
LDLR-206ENST00000557958 COX17Q14061 63 aa11.38□□□□□ -0.59
LDLR-206ENST00000557958 KIAA0087Q14695 138 aa11.38□□□□□ -0.59
LDLR-206ENST00000557958 SOSTDC1Q6X4U4 206 aa11.38□□□□□ -0.59
LDLR-206ENST00000557958 ANKRD29Q8N6D5 301 aa11.38□□□□□ -0.59
LDLR-206ENST00000557958 SLC25A20O43772 301 aa11.37□□□□□ -0.59
LDLR-206ENST00000557958 SPAG11BQ08648 103 aa11.37□□□□□ -0.59
LDLR-206ENST00000557958 C2orf82Q6UX34 121 aa11.36□□□□□ -0.59
LDLR-206ENST00000557958 TRAV13-2A0A0B4J235 113 aa11.36□□□□□ -0.59
LDLR-206ENST00000557958 CCL18P55774 89 aa11.36□□□□□ -0.59
LDLR-206ENST00000557958 ATXN8Q156A1 80 aa11.36□□□□□ -0.59
LDLR-206ENST00000557958 SND1-IT1Q9HBX3 110 aa11.36□□□□□ -0.59
LDLR-206ENST00000557958 MUC7Q8TAX7 377 aa11.35□□□□□ -0.59
LDLR-206ENST00000557958 DNAH10OSP0CZ25 163 aa11.34□□□□□ -0.59
LDLR-206ENST00000557958 C1orf43Q9BWL3 253 aa11.34□□□□□ -0.59
LDLR-206ENST00000557958 C9JAW5 83 aa11.34□□□□□ -0.59
LDLR-206ENST00000557958 TRIAP1O43715 76 aa11.34□□□□□ -0.59
LDLR-206ENST00000557958 PRKDCP78527 4128 aaKnown RBP11.33□□□□□ -0.6
LDLR-206ENST00000557958 LINC01620Q4KN68 170 aa11.32□□□□□ -0.6
LDLR-206ENST00000557958 XGP55808 180 aa11.31□□□□□ -0.6
LDLR-206ENST00000557958 MT-ATP8P03928 68 aa11.3□□□□□ -0.6
LDLR-206ENST00000557958 TRBV10-2A0A0K0K1G8 114 aa11.29□□□□□ -0.6
LDLR-206ENST00000557958 ZNF561-AS1K7EIQ3 104 aa11.29□□□□□ -0.6
LDLR-206ENST00000557958 LINC00588Q9Y4M8 146 aa11.29□□□□□ -0.6
LDLR-206ENST00000557958 GVQW2A0A096LPI5 108 aaPredicted RBP11.28□□□□□ -0.6
LDLR-206ENST00000557958 IGKV2D-24A0A075B6R9 120 aa11.27□□□□□ -0.6
LDLR-206ENST00000557958 UPK3BQ9BT76 320 aa11.27□□□□□ -0.6
LDLR-206ENST00000557958 KRTAP26-1Q6PEX3 210 aa11.27□□□□□ -0.61
LDLR-206ENST00000557958 NTN5Q8WTR8 489 aaPredicted RBP11.27□□□□□ -0.61
LDLR-206ENST00000557958 H3BT86 120 aa11.26□□□□□ -0.61
LDLR-206ENST00000557958 UNQ6190/PRO20217Q6UXQ8 127 aa11.26□□□□□ -0.61
LDLR-206ENST00000557958 RMI2Q96E14 147 aa11.26□□□□□ -0.61
LDLR-206ENST00000557958 IGKV2-28A0A075B6P5 120 aa11.25□□□□□ -0.61
LDLR-206ENST00000557958 NUPR2A6NF83 97 aa11.25□□□□□ -0.61
LDLR-206ENST00000557958 F8WDY8 70 aa11.25□□□□□ -0.61
LDLR-206ENST00000557958 NDUFC2O95298 119 aa11.25□□□□□ -0.61
LDLR-206ENST00000557958 IGKV2D-28P01615 120 aa11.25□□□□□ -0.61
LDLR-206ENST00000557958 C6orf223Q8N319 242 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms