RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 FHL2Q14192 279 aa8.58□□□□□ -1.04
CCDC88C-211ENST00000556726 LINC00959A0A1B0GUT2 108 aa8.58□□□□□ -1.04
CCDC88C-211ENST00000556726 IGLV1-51P01701 117 aa8.58□□□□□ -1.04
CCDC88C-211ENST00000556726 CR1P17927 2039 aa8.57□□□□□ -1.04
CCDC88C-211ENST00000556726 FAM104AQ969W3 186 aa8.57□□□□□ -1.04
CCDC88C-211ENST00000556726 SDIM1Q6ZPB5 146 aa8.57□□□□□ -1.04
CCDC88C-211ENST00000556726 LINC00337Q8N6G1 96 aa8.57□□□□□ -1.04
CCDC88C-211ENST00000556726 XAGE1AQ9HD64 81 aa8.57□□□□□ -1.04
CCDC88C-211ENST00000556726 INAFM2P0DMQ5 153 aa8.56□□□□□ -1.04
CCDC88C-211ENST00000556726 FAM218AQ96MZ4 157 aa8.56□□□□□ -1.04
CCDC88C-211ENST00000556726 A0A087WYN8 130 aa8.56□□□□□ -1.04
CCDC88C-211ENST00000556726 C9orf153Q5TBE3 101 aa8.56□□□□□ -1.04
CCDC88C-211ENST00000556726 CHCHD10Q8WYQ3 142 aaPredicted RBP8.56□□□□□ -1.04
CCDC88C-211ENST00000556726 LY6G6DO95868 133 aa8.55□□□□□ -1.04
CCDC88C-211ENST00000556726 HIGD2BQ4VC39 106 aa8.55□□□□□ -1.04
CCDC88C-211ENST00000556726 A8MTW9 85 aa8.55□□□□□ -1.04
CCDC88C-211ENST00000556726 SMIM20Q8N5G0 67 aa8.55□□□□□ -1.04
CCDC88C-211ENST00000556726 RPL18AQ02543 176 aaKnown RBP8.54□□□□□ -1.04
CCDC88C-211ENST00000556726 REG3AQ06141 175 aa8.54□□□□□ -1.04
CCDC88C-211ENST00000556726 TIMM17BO60830 172 aa8.54□□□□□ -1.04
CCDC88C-211ENST00000556726 SPAG11BQ08648 103 aa8.53□□□□□ -1.04
CCDC88C-211ENST00000556726 IGLV5-39A0A0G2JS06 123 aa8.53□□□□□ -1.04
CCDC88C-211ENST00000556726 IGHV4-28A0A0C4DH34 117 aa8.53□□□□□ -1.04
CCDC88C-211ENST00000556726 HAMPP81172 84 aa8.53□□□□□ -1.04
CCDC88C-211ENST00000556726 GIG44P09565 113 aaPredicted RBP8.52□□□□□ -1.05
CCDC88C-211ENST00000556726 HILS1P60008 231 aa8.52□□□□□ -1.05
CCDC88C-211ENST00000556726 ORMDL1Q9P0S3 153 aa8.52□□□□□ -1.05
CCDC88C-211ENST00000556726 COL6A5A8TX70 2615 aa8.52□□□□□ -1.05
CCDC88C-211ENST00000556726 ZNF561-AS1K7EIQ3 104 aa8.52□□□□□ -1.05
CCDC88C-211ENST00000556726 APOC4P55056 127 aa8.52□□□□□ -1.05
CCDC88C-211ENST00000556726 NBPF19A0A087WUL8 3843 aa8.52□□□□□ -1.05
CCDC88C-211ENST00000556726 C6orf223Q8N319 242 aa8.52□□□□□ -1.05
CCDC88C-211ENST00000556726 MRAPQ8TCY5 172 aa8.52□□□□□ -1.05
CCDC88C-211ENST00000556726 C6orf99Q4VX62 202 aa8.51□□□□□ -1.05
CCDC88C-211ENST00000556726 C9orf66Q5T8R8 295 aa8.51□□□□□ -1.05
CCDC88C-211ENST00000556726 WFDC9Q8NEX5 89 aa8.51□□□□□ -1.05
CCDC88C-211ENST00000556726 RETNQ9HD89 108 aa8.5□□□□□ -1.05
CCDC88C-211ENST00000556726 SPART-AS1P0CW21 52 aa8.5□□□□□ -1.05
CCDC88C-211ENST00000556726 UNQ6190/PRO20217Q6UXQ8 127 aa8.5□□□□□ -1.05
CCDC88C-211ENST00000556726 SPATA3Q8NHX4 192 aa8.5□□□□□ -1.05
CCDC88C-211ENST00000556726 IBA57-AS1B1ANH7 110 aa8.49□□□□□ -1.05
CCDC88C-211ENST00000556726 DEFB121Q5J5C9 76 aa8.49□□□□□ -1.05
CCDC88C-211ENST00000556726 SBSPONQ8IVN8 264 aa8.49□□□□□ -1.05
CCDC88C-211ENST00000556726 PRB2P02812 416 aaPredicted RBP8.49□□□□□ -1.05
CCDC88C-211ENST00000556726 KRTAP1-3Q8IUG1 177 aa8.49□□□□□ -1.05
CCDC88C-211ENST00000556726 IGKV2D-24A0A075B6R9 120 aa8.49□□□□□ -1.05
CCDC88C-211ENST00000556726 A0A087WVE0 104 aa8.49□□□□□ -1.05
CCDC88C-211ENST00000556726 IGHV3OR16-9A0A0B4J2B5 98 aa8.49□□□□□ -1.05
CCDC88C-211ENST00000556726 H0YGX0 51 aa8.49□□□□□ -1.05
CCDC88C-211ENST00000556726 MRPL23Q16540 153 aaKnown RBP8.49□□□□□ -1.05
CCDC88C-211ENST00000556726 TRACP01848 142 aa8.48□□□□□ -1.05
CCDC88C-211ENST00000556726 CSDC2Q9Y534 153 aaKnown RBP8.48□□□□□ -1.05
CCDC88C-211ENST00000556726 IGLV5-45A0A087WSX0 123 aa8.48□□□□□ -1.05
CCDC88C-211ENST00000556726 A0A087WZ39 114 aa8.48□□□□□ -1.05
CCDC88C-211ENST00000556726 DEFB105AQ8NG35 78 aa8.48□□□□□ -1.05
CCDC88C-211ENST00000556726 OVOL2Q9BRP0 275 aa8.48□□□□□ -1.05
CCDC88C-211ENST00000556726 VWFP04275 2813 aa8.47□□□□□ -1.05
CCDC88C-211ENST00000556726 CELA1Q9UNI1 258 aa8.47□□□□□ -1.05
CCDC88C-211ENST00000556726 A0A1B0GX51 115 aa8.47□□□□□ -1.05
CCDC88C-211ENST00000556726 CAMK2N2Q96S95 79 aa8.47□□□□□ -1.05
CCDC88C-211ENST00000556726 CXCL5P42830 114 aa8.46□□□□□ -1.06
CCDC88C-211ENST00000556726 IGKV2-28A0A075B6P5 120 aa8.46□□□□□ -1.06
CCDC88C-211ENST00000556726 IGKV2D-28P01615 120 aa8.46□□□□□ -1.06
CCDC88C-211ENST00000556726 LINC00643Q86TS7 51 aa8.46□□□□□ -1.06
CCDC88C-211ENST00000556726 PLAC8L1A1L4L8 177 aa8.45□□□□□ -1.06
CCDC88C-211ENST00000556726 TRAV23DV6A0A075B6W5 121 aa8.44□□□□□ -1.06
CCDC88C-211ENST00000556726 TMEM126AQ9H061 195 aa8.44□□□□□ -1.06
CCDC88C-211ENST00000556726 ACYP1P07311 99 aa8.44□□□□□ -1.06
CCDC88C-211ENST00000556726 SCXQ7RTU7 201 aa8.44□□□□□ -1.06
CCDC88C-211ENST00000556726 BAHCC1Q9P281 2608 aa8.44□□□□□ -1.06
CCDC88C-211ENST00000556726 TENM4Q6N022 2769 aa8.43□□□□□ -1.06
CCDC88C-211ENST00000556726 RPL28P46779 137 aaKnown RBP8.43□□□□□ -1.06
CCDC88C-211ENST00000556726 SHISA2Q6UWI4 295 aa8.43□□□□□ -1.06
CCDC88C-211ENST00000556726 CITED1Q99966 193 aa8.43□□□□□ -1.06
CCDC88C-211ENST00000556726 CYSRT1A8MQ03 144 aa8.42□□□□□ -1.06
CCDC88C-211ENST00000556726 IGHV4-30-4P0DP06 118 aa8.42□□□□□ -1.06
CCDC88C-211ENST00000556726 CD164L2Q6UWJ8 174 aa8.42□□□□□ -1.06
CCDC88C-211ENST00000556726 C19orf73Q9NVV2 129 aa8.42□□□□□ -1.06
CCDC88C-211ENST00000556726 C9orf129Q5T035 196 aaKnown RBP8.42□□□□□ -1.06
CCDC88C-211ENST00000556726 UBL5Q9BZL1 73 aa8.42□□□□□ -1.06
CCDC88C-211ENST00000556726 NSD1Q96L73 2696 aaPredicted RBP8.42□□□□□ -1.06
CCDC88C-211ENST00000556726 KRTAP10-3P60369 221 aa8.42□□□□□ -1.06
CCDC88C-211ENST00000556726 C10orf25Q5T742 122 aa8.42□□□□□ -1.06
CCDC88C-211ENST00000556726 CSNK1G2-AS1Q8NCQ2 148 aa8.42□□□□□ -1.06
CCDC88C-211ENST00000556726 KLK5Q9Y337 293 aaPredicted RBP8.41□□□□□ -1.06
CCDC88C-211ENST00000556726 X6R8D5 127 aa8.41□□□□□ -1.06
CCDC88C-211ENST00000556726 TENM1Q9UKZ4 2725 aa8.41□□□□□ -1.06
CCDC88C-211ENST00000556726 Q6ZQY7 126 aa8.4□□□□□ -1.06
CCDC88C-211ENST00000556726 LINC00846Q9NV44 126 aa8.4□□□□□ -1.06
CCDC88C-211ENST00000556726 LYRM9A8MSI8 78 aa8.4□□□□□ -1.06
CCDC88C-211ENST00000556726 DSCR8Q96T75 97 aa8.4□□□□□ -1.06
CCDC88C-211ENST00000556726 SMCR5Q8TEV8 140 aa8.4□□□□□ -1.07
CCDC88C-211ENST00000556726 C1orf43Q9BWL3 253 aa8.4□□□□□ -1.07
CCDC88C-211ENST00000556726 hADV29S1A0JD25 119 aa8.39□□□□□ -1.07
CCDC88C-211ENST00000556726 ENHOQ6UWT2 76 aa8.39□□□□□ -1.07
CCDC88C-211ENST00000556726 Q8IZM0 81 aa8.39□□□□□ -1.07
CCDC88C-211ENST00000556726 KIR2DL5BQ8NHK3 375 aa8.39□□□□□ -1.07
CCDC88C-211ENST00000556726 DPH3Q96FX2 82 aa8.38□□□□□ -1.07
CCDC88C-211ENST00000556726 C16orf95Q9H693 158 aa8.38□□□□□ -1.07
CCDC88C-211ENST00000556726 NHLRC4P0CG21 123 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms