RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 IBA57-AS1B1ANH7 110 aa17.91■□□□□ 0.46
CCDC88C-205ENST00000553403 ARL17AQ8IVW1 177 aa17.91■□□□□ 0.46
CCDC88C-205ENST00000553403 KLK12Q9UKR0 248 aa17.91■□□□□ 0.46
CCDC88C-205ENST00000553403 FOXI1Q12951 378 aa17.9■□□□□ 0.46
CCDC88C-205ENST00000553403 IGLV10-54A0A075B6I4 117 aa17.9■□□□□ 0.46
CCDC88C-205ENST00000553403 MRAPQ8TCY5 172 aa17.9■□□□□ 0.46
CCDC88C-205ENST00000553403 TRAV10A0A0B4J240 114 aa17.89■□□□□ 0.45
CCDC88C-205ENST00000553403 SOSTDC1Q6X4U4 206 aa17.89■□□□□ 0.45
CCDC88C-205ENST00000553403 ESRGQ1W209 222 aa17.88■□□□□ 0.45
CCDC88C-205ENST00000553403 ENHOQ6UWT2 76 aa17.87■□□□□ 0.45
CCDC88C-205ENST00000553403 MALP21145 153 aa17.87■□□□□ 0.45
CCDC88C-205ENST00000553403 WFDC10BQ8IUB3 73 aa17.87■□□□□ 0.45
CCDC88C-205ENST00000553403 TRBV20-1A0A075B6N2 111 aa17.86■□□□□ 0.45
CCDC88C-205ENST00000553403 TRAV8-4A0A0B4J246 113 aa17.85■□□□□ 0.45
CCDC88C-205ENST00000553403 GAGE12HA6NDE8 117 aa17.85■□□□□ 0.45
CCDC88C-205ENST00000553403 H3BMG7 143 aa17.85■□□□□ 0.45
CCDC88C-205ENST00000553403 CXCL5P42830 114 aa17.85■□□□□ 0.45
CCDC88C-205ENST00000553403 KIAA0087Q14695 138 aa17.85■□□□□ 0.45
CCDC88C-205ENST00000553403 LINC00158P58513 81 aa17.84■□□□□ 0.45
CCDC88C-205ENST00000553403 Q1RN00 199 aa17.84■□□□□ 0.45
CCDC88C-205ENST00000553403 MIR7-3HGQ8N6C7 128 aa17.84■□□□□ 0.45
CCDC88C-205ENST00000553403 H7C2G1 150 aa17.83■□□□□ 0.45
CCDC88C-205ENST00000553403 CRPP02741 224 aa17.83■□□□□ 0.45
CCDC88C-205ENST00000553403 PSMB2P49721 201 aa17.83■□□□□ 0.45
CCDC88C-205ENST00000553403 C15orf53Q8NAA6 179 aa17.83■□□□□ 0.45
CCDC88C-205ENST00000553403 TGP01266 2768 aa17.83■□□□□ 0.45
CCDC88C-205ENST00000553403 TRBV30A0A0K0K1B3 111 aa17.83■□□□□ 0.44
CCDC88C-205ENST00000553403 F8W1H4 67 aa17.83■□□□□ 0.44
CCDC88C-205ENST00000553403 SCGB1C2P0DMR2 95 aa17.83■□□□□ 0.44
CCDC88C-205ENST00000553403 CFAP161Q6P656 301 aa17.83■□□□□ 0.44
CCDC88C-205ENST00000553403 KLK5Q9Y337 293 aaPredicted RBP17.83■□□□□ 0.44
CCDC88C-205ENST00000553403 CKS1BP61024 79 aa17.81■□□□□ 0.44
CCDC88C-205ENST00000553403 UBE2WQ96B02 151 aa17.8■□□□□ 0.44
CCDC88C-205ENST00000553403 RPL13AP40429 203 aaKnown RBP17.8■□□□□ 0.44
CCDC88C-205ENST00000553403 TCL1BO95988 128 aa17.79■□□□□ 0.44
CCDC88C-205ENST00000553403 LINC01556Q5JQF7 62 aa17.77■□□□□ 0.44
CCDC88C-205ENST00000553403 C2orf82Q6UX34 121 aa17.77■□□□□ 0.44
CCDC88C-205ENST00000553403 PRO0461Q9UI25 63 aa17.77■□□□□ 0.44
CCDC88C-205ENST00000553403 PFN2P35080 140 aa17.77■□□□□ 0.43
CCDC88C-205ENST00000553403 PRKDCP78527 4128 aaKnown RBP17.76■□□□□ 0.43
CCDC88C-205ENST00000553403 TRIAP1O43715 76 aa17.76■□□□□ 0.43
CCDC88C-205ENST00000553403 CCL18P55774 89 aa17.74■□□□□ 0.43
CCDC88C-205ENST00000553403 COX17Q14061 63 aa17.74■□□□□ 0.43
CCDC88C-205ENST00000553403 TENM3Q9P273 2699 aa17.73■□□□□ 0.43
CCDC88C-205ENST00000553403 COX6CP09669 75 aa17.73■□□□□ 0.43
CCDC88C-205ENST00000553403 SPAG11BQ08648 103 aa17.73■□□□□ 0.43
CCDC88C-205ENST00000553403 SND1-IT1Q9HBX3 110 aa17.73■□□□□ 0.43
CCDC88C-205ENST00000553403 OCIAD2Q56VL3 154 aa17.72■□□□□ 0.43
CCDC88C-205ENST00000553403 WFDC2Q14508 124 aa17.71■□□□□ 0.43
CCDC88C-205ENST00000553403 TRAV13-2A0A0B4J235 113 aa17.71■□□□□ 0.42
CCDC88C-205ENST00000553403 DNAH10OSP0CZ25 163 aa17.7■□□□□ 0.42
CCDC88C-205ENST00000553403 KRTAP26-1Q6PEX3 210 aa17.7■□□□□ 0.42
CCDC88C-205ENST00000553403 HUWE1Q7Z6Z7 4374 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-205ENST00000553403 ATXN8Q156A1 80 aa17.69■□□□□ 0.42
CCDC88C-205ENST00000553403 B9D2Q9BPU9 175 aa17.67■□□□□ 0.42
CCDC88C-205ENST00000553403 MUC7Q8TAX7 377 aa17.66■□□□□ 0.42
CCDC88C-205ENST00000553403 IGKV2-28A0A075B6P5 120 aa17.65■□□□□ 0.42
CCDC88C-205ENST00000553403 IGKV2D-28P01615 120 aa17.65■□□□□ 0.42
CCDC88C-205ENST00000553403 MTURNQ8N3F0 131 aa17.65■□□□□ 0.42
CCDC88C-205ENST00000553403 K7ERU9 68 aa17.64■□□□□ 0.42
CCDC88C-205ENST00000553403 LINC00588Q9Y4M8 146 aa17.64■□□□□ 0.42
CCDC88C-205ENST00000553403 C6orf223Q8N319 242 aa17.64■□□□□ 0.41
CCDC88C-205ENST00000553403 SMCPP49901 116 aaPredicted RBP17.63■□□□□ 0.41
CCDC88C-205ENST00000553403 C1orf43Q9BWL3 253 aa17.63■□□□□ 0.41
CCDC88C-205ENST00000553403 GVQW2A0A096LPI5 108 aaPredicted RBP17.62■□□□□ 0.41
CCDC88C-205ENST00000553403 UNQ6190/PRO20217Q6UXQ8 127 aa17.62■□□□□ 0.41
CCDC88C-205ENST00000553403 LINC00337Q8N6G1 96 aa17.62■□□□□ 0.41
CCDC88C-205ENST00000553403 NTN5Q8WTR8 489 aaPredicted RBP17.62■□□□□ 0.41
CCDC88C-205ENST00000553403 LINC01620Q4KN68 170 aa17.6■□□□□ 0.41
CCDC88C-205ENST00000553403 C10orf25Q5T742 122 aa17.6■□□□□ 0.41
CCDC88C-205ENST00000553403 M0QXV9 152 aa17.59■□□□□ 0.41
CCDC88C-205ENST00000553403 C9orf116Q5BN46 136 aaPredicted RBP17.59■□□□□ 0.41
CCDC88C-205ENST00000553403 ETDBQ3ZM63 59 aa17.58■□□□□ 0.41
CCDC88C-205ENST00000553403 LST1O00453 97 aa17.58■□□□□ 0.4
CCDC88C-205ENST00000553403 NDUFC2O95298 119 aa17.58■□□□□ 0.4
CCDC88C-205ENST00000553403 LINC00526Q96FQ7 95 aa17.58■□□□□ 0.4
CCDC88C-205ENST00000553403 UPK3BQ9BT76 320 aa17.58■□□□□ 0.4
CCDC88C-205ENST00000553403 RPL28P46779 137 aaKnown RBP17.57■□□□□ 0.4
CCDC88C-205ENST00000553403 C9JAW5 83 aa17.56■□□□□ 0.4
CCDC88C-205ENST00000553403 IGKV2D-24A0A075B6R9 120 aa17.55■□□□□ 0.4
CCDC88C-205ENST00000553403 ZNF561-AS1K7EIQ3 104 aa17.55■□□□□ 0.4
CCDC88C-205ENST00000553403 CLEC2BQ92478 149 aa17.55■□□□□ 0.4
CCDC88C-205ENST00000553403 SLC25A20O43772 301 aa17.55■□□□□ 0.4
CCDC88C-205ENST00000553403 LINC01600Q96MT4 127 aa17.55■□□□□ 0.4
CCDC88C-205ENST00000553403 C15orf56Q8N910 161 aa17.54■□□□□ 0.4
CCDC88C-205ENST00000553403 C2orf48Q96LS8 159 aa17.53■□□□□ 0.4
CCDC88C-205ENST00000553403 TRBV10-2A0A0K0K1G8 114 aa17.52■□□□□ 0.4
CCDC88C-205ENST00000553403 F8WDY8 70 aa17.52■□□□□ 0.4
CCDC88C-205ENST00000553403 C6orf48Q9UBA6 75 aa17.52■□□□□ 0.4
CCDC88C-205ENST00000553403 NHLRC4P0CG21 123 aaPredicted RBP17.51■□□□□ 0.39
CCDC88C-205ENST00000553403 HIGD2BQ4VC39 106 aa17.51■□□□□ 0.39
CCDC88C-205ENST00000553403 CAMK2N2Q96S95 79 aa17.5■□□□□ 0.39
CCDC88C-205ENST00000553403 TEN1Q86WV5 123 aa17.49■□□□□ 0.39
CCDC88C-205ENST00000553403 SMIM11BQ8TCY0 68 aa17.49■□□□□ 0.39
CCDC88C-205ENST00000553403 ANKRD29Q8N6D5 301 aa17.48■□□□□ 0.39
CCDC88C-205ENST00000553403 Q9HAA7 133 aa17.48■□□□□ 0.39
CCDC88C-205ENST00000553403 OR13C6PQ8NH95 151 aa17.48■□□□□ 0.39
CCDC88C-205ENST00000553403 J3QR89 54 aa17.47■□□□□ 0.39
CCDC88C-205ENST00000553403 DNAH9Q9NYC9 4486 aa17.47■□□□□ 0.39
CCDC88C-205ENST00000553403 RMI2Q96E14 147 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms