RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 SIGMAR1Q99720 223 aa3.89□□□□□ -1.79
LIMA1-215ENST00000552823 TENM2Q9NT68 2774 aa3.89□□□□□ -1.79
LIMA1-215ENST00000552823 SND1-IT1Q9HBX3 110 aa3.89□□□□□ -1.79
LIMA1-215ENST00000552823 NDUFA1O15239 70 aa3.89□□□□□ -1.79
LIMA1-215ENST00000552823 MT-ATP8P03928 68 aa3.89□□□□□ -1.79
LIMA1-215ENST00000552823 ATXN8Q156A1 80 aa3.89□□□□□ -1.79
LIMA1-215ENST00000552823 HIGD2BQ4VC39 106 aa3.89□□□□□ -1.79
LIMA1-215ENST00000552823 IL17DQ8TAD2 202 aa3.89□□□□□ -1.79
LIMA1-215ENST00000552823 OVOL2Q9BRP0 275 aa3.89□□□□□ -1.79
LIMA1-215ENST00000552823 APOC4P55056 127 aa3.88□□□□□ -1.79
LIMA1-215ENST00000552823 KRTAP24-1Q3LI83 254 aa3.88□□□□□ -1.79
LIMA1-215ENST00000552823 SBSPONQ8IVN8 264 aa3.88□□□□□ -1.79
LIMA1-215ENST00000552823 NANOS2P60321 138 aaKnown RBP3.88□□□□□ -1.79
LIMA1-215ENST00000552823 CHCHD10Q8WYQ3 142 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-215ENST00000552823 CRPP02741 224 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 SPART-AS1P0CW21 52 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 REG3AQ06141 175 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 TEN1Q86WV5 123 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 XAGE1AQ9HD64 81 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 TRBV20-1A0A075B6N2 111 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 A0A0B4J2C4 111 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 CCL18P55774 89 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 TTC32Q5I0X7 151 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 Q6ZTC4 211 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 PPDPFLQ8WWR9 84 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 IGHV3OR16-9A0A0B4J2B5 98 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 NCR3O14931 201 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 KRTAP10-11P60412 298 aa3.87□□□□□ -1.79
LIMA1-215ENST00000552823 IGLV5-39A0A0G2JS06 123 aa3.86□□□□□ -1.79
LIMA1-215ENST00000552823 UNQ6190/PRO20217Q6UXQ8 127 aa3.86□□□□□ -1.79
LIMA1-215ENST00000552823 LINC00337Q8N6G1 96 aa3.86□□□□□ -1.79
LIMA1-215ENST00000552823 H7C423 109 aa3.86□□□□□ -1.79
LIMA1-215ENST00000552823 LECT2O14960 151 aa3.86□□□□□ -1.79
LIMA1-215ENST00000552823 C10orf25Q5T742 122 aa3.86□□□□□ -1.79
LIMA1-215ENST00000552823 EDA2RQ9HAV5 297 aa3.86□□□□□ -1.79
LIMA1-215ENST00000552823 A0A0J9YWU9 116 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 XGP55808 180 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 WFDC10BQ8IUB3 73 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 FAM218AQ96MZ4 157 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 SPANXDQ9BXN6 97 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 SPANXCQ9NY87 97 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 COX7A2LO14548 114 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 BAALC-AS2P0C853 105 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 MRPL23Q16540 153 aaKnown RBP3.85□□□□□ -1.79
LIMA1-215ENST00000552823 GAGE2EQ4V326 116 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 KIR2DL5BQ8NHK3 375 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 GAGE2DQ9UEU5 116 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 TRAV8-4A0A0B4J246 113 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 KPRPQ5T749 579 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-215ENST00000552823 Q8NAQ8 132 aa3.85□□□□□ -1.79
LIMA1-215ENST00000552823 IGLV5-45A0A087WSX0 123 aa3.84□□□□□ -1.79
LIMA1-215ENST00000552823 DNAL4O96015 105 aa3.84□□□□□ -1.79
LIMA1-215ENST00000552823 IFITM1P13164 125 aa3.84□□□□□ -1.79
LIMA1-215ENST00000552823 SMIM11BQ8TCY0 68 aa3.84□□□□□ -1.79
LIMA1-215ENST00000552823 IGKV2D-24A0A075B6R9 120 aa3.84□□□□□ -1.79
LIMA1-215ENST00000552823 TRBV30A0A0K0K1B3 111 aa3.84□□□□□ -1.79
LIMA1-215ENST00000552823 TRBV10-2A0A0K0K1G8 114 aa3.84□□□□□ -1.79
LIMA1-215ENST00000552823 HERV-K104P63124 156 aa3.84□□□□□ -1.79
LIMA1-215ENST00000552823 SPAG11BQ08648 103 aa3.84□□□□□ -1.79
LIMA1-215ENST00000552823 C15orf53Q8NAA6 179 aa3.84□□□□□ -1.79
LIMA1-215ENST00000552823 A0A087WYN8 130 aa3.83□□□□□ -1.8
LIMA1-215ENST00000552823 A0A087WZ39 114 aa3.83□□□□□ -1.8
LIMA1-215ENST00000552823 LYRM9A8MSI8 78 aa3.83□□□□□ -1.8
LIMA1-215ENST00000552823 GAGE2AQ6NT46 116 aa3.83□□□□□ -1.8
LIMA1-215ENST00000552823 CSDC2Q9Y534 153 aaKnown RBP3.83□□□□□ -1.8
LIMA1-215ENST00000552823 IGKV2-28A0A075B6P5 120 aa3.83□□□□□ -1.8
LIMA1-215ENST00000552823 IGKV2D-28P01615 120 aa3.83□□□□□ -1.8
LIMA1-215ENST00000552823 RPL18AQ02543 176 aaKnown RBP3.83□□□□□ -1.8
LIMA1-215ENST00000552823 S100A7L2Q5SY68 101 aa3.83□□□□□ -1.8
LIMA1-215ENST00000552823 CDIP1Q9H305 208 aa3.83□□□□□ -1.8
LIMA1-215ENST00000552823 RNF183Q96D59 192 aa3.83□□□□□ -1.8
LIMA1-215ENST00000552823 CSMD3Q7Z407 3707 aa3.83□□□□□ -1.8
LIMA1-215ENST00000552823 SMIM9A6NGZ8 99 aa3.82□□□□□ -1.8
LIMA1-215ENST00000552823 LST1O00453 97 aa3.82□□□□□ -1.8
LIMA1-215ENST00000552823 DEFB131BA0A096LNP1 70 aa3.82□□□□□ -1.8
LIMA1-215ENST00000552823 SNCGO76070 127 aa3.82□□□□□ -1.8
LIMA1-215ENST00000552823 MIFP14174 115 aa3.82□□□□□ -1.8
LIMA1-215ENST00000552823 C14orf132Q9NPU4 83 aa3.82□□□□□ -1.8
LIMA1-215ENST00000552823 C9orf129Q5T035 196 aaKnown RBP3.82□□□□□ -1.8
LIMA1-215ENST00000552823 LYPD5Q6UWN5 251 aa3.82□□□□□ -1.8
LIMA1-215ENST00000552823 ZNF561-AS1K7EIQ3 104 aa3.81□□□□□ -1.8
LIMA1-215ENST00000552823 C11orf45Q8TAV5 145 aa3.81□□□□□ -1.8
LIMA1-215ENST00000552823 TRAV13-2A0A0B4J235 113 aa3.81□□□□□ -1.8
LIMA1-215ENST00000552823 ESRGQ1W209 222 aa3.81□□□□□ -1.8
LIMA1-215ENST00000552823 CD164L2Q6UWJ8 174 aa3.81□□□□□ -1.8
LIMA1-215ENST00000552823 TIMM17BO60830 172 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 CAMK2N2Q96S95 79 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 IBA57-AS1B1ANH7 110 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 F8WDY8 70 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 M0QXV9 152 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 C6orf99Q4VX62 202 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 ENHOQ6UWT2 76 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 Q8NDZ9 215 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 WFDC9Q8NEX5 89 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 IGKV3D-7A0A0C4DH55 119 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 GAGE2BQ13066 116 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 LELP1Q5T871 98 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 COPS9Q8WXC6 57 aa3.8□□□□□ -1.8
LIMA1-215ENST00000552823 LINC00612Q8N6U2 182 aa3.79□□□□□ -1.8
LIMA1-215ENST00000552823 SPATA25Q9BR10 227 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms