RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 S100PP25815 95 aa9.96□□□□□ -0.82
VPS29-207ENST00000549970 UBE2BP63146 152 aa9.96□□□□□ -0.82
VPS29-207ENST00000549970 SEC11AP67812 179 aa9.96□□□□□ -0.82
VPS29-207ENST00000549970 Q8IZM0 81 aa9.96□□□□□ -0.82
VPS29-207ENST00000549970 ALKBH7Q9BT30 221 aaPredicted RBP9.96□□□□□ -0.82
VPS29-207ENST00000549970 SEC11CQ9BY50 192 aa9.96□□□□□ -0.82
VPS29-207ENST00000549970 SCGB3A1Q96QR1 104 aa9.95□□□□□ -0.82
VPS29-207ENST00000549970 ERASQ7Z444 233 aa9.94□□□□□ -0.82
VPS29-207ENST00000549970 LINC00469Q8N7U9 141 aa9.94□□□□□ -0.82
VPS29-207ENST00000549970 DIRC1Q969H9 104 aa9.94□□□□□ -0.82
VPS29-207ENST00000549970 GNB1LQ9BYB4 327 aa9.94□□□□□ -0.82
VPS29-207ENST00000549970 COMMD7Q86VX2 200 aa9.93□□□□□ -0.82
VPS29-207ENST00000549970 H0Y9J4 135 aa9.91□□□□□ -0.82
VPS29-207ENST00000549970 XAGE1AQ9HD64 81 aa9.91□□□□□ -0.82
VPS29-207ENST00000549970 F8VRH5 84 aa9.9□□□□□ -0.82
VPS29-207ENST00000549970 FABP9Q0Z7S8 132 aa9.9□□□□□ -0.82
VPS29-207ENST00000549970 MRPL18Q9H0U6 180 aaKnown RBP9.9□□□□□ -0.82
VPS29-207ENST00000549970 TINCRA0A1B0GVN0 87 aa9.89□□□□□ -0.83
VPS29-207ENST00000549970 LINC01546A6NGU7 62 aa9.89□□□□□ -0.83
VPS29-207ENST00000549970 SMIM1B2RUZ4 78 aa9.89□□□□□ -0.83
VPS29-207ENST00000549970 CXCL5P42830 114 aa9.89□□□□□ -0.83
VPS29-207ENST00000549970 COX19Q49B96 90 aa9.89□□□□□ -0.83
VPS29-207ENST00000549970 FA2HQ7L5A8 372 aa9.89□□□□□ -0.83
VPS29-207ENST00000549970 PRR26Q8N8Z3 221 aa9.89□□□□□ -0.83
VPS29-207ENST00000549970 RPS10P5Q9NQ39 176 aa9.89□□□□□ -0.83
VPS29-207ENST00000549970 SMCO4Q9NRQ5 59 aa9.89□□□□□ -0.83
VPS29-207ENST00000549970 LINC01549A6NIU2 74 aa9.88□□□□□ -0.83
VPS29-207ENST00000549970 CST9LQ9H4G1 147 aa9.88□□□□□ -0.83
VPS29-207ENST00000549970 C22orf24Q9Y442 160 aa9.88□□□□□ -0.83
VPS29-207ENST00000549970 PDZD11Q5EBL8 140 aa9.87□□□□□ -0.83
VPS29-207ENST00000549970 COX7B2Q8TF08 81 aa9.87□□□□□ -0.83
VPS29-207ENST00000549970 IGLV5-45A0A087WSX0 123 aa9.86□□□□□ -0.83
VPS29-207ENST00000549970 SPINK8P0C7L1 97 aa9.86□□□□□ -0.83
VPS29-207ENST00000549970 PMVKQ15126 192 aa9.86□□□□□ -0.83
VPS29-207ENST00000549970 RHEBQ15382 184 aa9.86□□□□□ -0.83
VPS29-207ENST00000549970 C10orf91Q5T1B1 145 aa9.86□□□□□ -0.83
VPS29-207ENST00000549970 CARHSP1Q9Y2V2 147 aaKnown RBP9.85□□□□□ -0.83
VPS29-207ENST00000549970 KRTAP1-4P0C5Y4 121 aa9.84□□□□□ -0.83
VPS29-207ENST00000549970 LBHQ53QV2 105 aaPredicted RBP9.84□□□□□ -0.83
VPS29-207ENST00000549970 IGLV1-50A0A075B6I6 118 aa9.82□□□□□ -0.84
VPS29-207ENST00000549970 NUPR1O60356 82 aa9.82□□□□□ -0.84
VPS29-207ENST00000549970 RAB5BP61020 215 aa9.82□□□□□ -0.84
VPS29-207ENST00000549970 MRPL55Q7Z7F7 128 aaKnown RBP9.82□□□□□ -0.84
VPS29-207ENST00000549970 LPAP08519 4548 aa9.82□□□□□ -0.84
VPS29-207ENST00000549970 RNF213Q63HN8 5207 aa9.81□□□□□ -0.84
VPS29-207ENST00000549970 H3BRM9 83 aa9.81□□□□□ -0.84
VPS29-207ENST00000549970 ZNF861PO60384 105 aa9.81□□□□□ -0.84
VPS29-207ENST00000549970 NDUFA6P56556 154 aa9.81□□□□□ -0.84
VPS29-207ENST00000549970 TP73-AS1Q9UF72 201 aa9.81□□□□□ -0.84
VPS29-207ENST00000549970 TRAPPC1Q9Y5R8 145 aa9.81□□□□□ -0.84
VPS29-207ENST00000549970 A0A096LNJ9 63 aa9.8□□□□□ -0.84
VPS29-207ENST00000549970 C18orf32Q8TCD1 76 aa9.8□□□□□ -0.84
VPS29-207ENST00000549970 URB1-AS1Q96HZ7 61 aa9.79□□□□□ -0.84
VPS29-207ENST00000549970 RPL37AP8A6NKH3 93 aa9.78□□□□□ -0.84
VPS29-207ENST00000549970 LINC00614P0C842 121 aa9.78□□□□□ -0.84
VPS29-207ENST00000549970 IGLC3P0DOY3 106 aa9.78□□□□□ -0.84
VPS29-207ENST00000549970 PMCHL1Q16048 86 aa9.78□□□□□ -0.84
VPS29-207ENST00000549970 LINC00167Q96N53 147 aa9.78□□□□□ -0.84
VPS29-207ENST00000549970 GAGE10A6NGK3 116 aa9.77□□□□□ -0.85
VPS29-207ENST00000549970 ATP5LO75964 103 aa9.77□□□□□ -0.85
VPS29-207ENST00000549970 HBDP02042 147 aa9.77□□□□□ -0.85
VPS29-207ENST00000549970 APOC3P02656 99 aa9.77□□□□□ -0.85
VPS29-207ENST00000549970 BCE1O60756 84 aa9.76□□□□□ -0.85
VPS29-207ENST00000549970 ZNF22P17026 224 aaPredicted RBP9.76□□□□□ -0.85
VPS29-207ENST00000549970 IGLV5-39A0A0G2JS06 123 aa9.75□□□□□ -0.85
VPS29-207ENST00000549970 PFN2P35080 140 aa9.75□□□□□ -0.85
VPS29-207ENST00000549970 RPL13AP40429 203 aaKnown RBP9.75□□□□□ -0.85
VPS29-207ENST00000549970 NKAPP1Q8N9T2 125 aa9.75□□□□□ -0.85
VPS29-207ENST00000549970 RPL28P46779 137 aaKnown RBP9.74□□□□□ -0.85
VPS29-207ENST00000549970 IGLV5-37A0A075B6J1 123 aa9.73□□□□□ -0.85
VPS29-207ENST00000549970 SNAPINO95295 136 aa9.73□□□□□ -0.85
VPS29-207ENST00000549970 NDUFA5Q16718 116 aa9.73□□□□□ -0.85
VPS29-207ENST00000549970 SVBPQ8N300 66 aa9.73□□□□□ -0.85
VPS29-207ENST00000549970 C11orf86A6NJI1 115 aa9.72□□□□□ -0.85
VPS29-207ENST00000549970 SCO1O75880 301 aa9.72□□□□□ -0.85
VPS29-207ENST00000549970 BAGE3Q86Y29 109 aa9.72□□□□□ -0.85
VPS29-207ENST00000549970 TMEM170BQ5T4T1 132 aa9.71□□□□□ -0.86
VPS29-207ENST00000549970 ZNF625Q96I27 306 aaPredicted RBP9.71□□□□□ -0.86
VPS29-207ENST00000549970 ERG28Q9UKR5 140 aa9.71□□□□□ -0.86
VPS29-207ENST00000549970 IGKV2-28A0A075B6P5 120 aa9.69□□□□□ -0.86
VPS29-207ENST00000549970 IGKV2D-28P01615 120 aa9.69□□□□□ -0.86
VPS29-207ENST00000549970 UBE2AP49459 152 aa9.69□□□□□ -0.86
VPS29-207ENST00000549970 SND1-IT1Q9HBX3 110 aa9.69□□□□□ -0.86
VPS29-207ENST00000549970 A0A087X002 238 aa9.68□□□□□ -0.86
VPS29-207ENST00000549970 CHTOPQ9Y3Y2 248 aaKnown RBP9.68□□□□□ -0.86
VPS29-207ENST00000549970 VPREB1P12018 145 aa9.67□□□□□ -0.86
VPS29-207ENST00000549970 COX17Q14061 63 aa9.67□□□□□ -0.86
VPS29-207ENST00000549970 PRR4Q16378 134 aa9.66□□□□□ -0.86
VPS29-207ENST00000549970 KRTAP13-1Q8IUC0 172 aa9.66□□□□□ -0.86
VPS29-207ENST00000549970 YPEL4Q96NS1 127 aa9.66□□□□□ -0.86
VPS29-207ENST00000549970 ANAPC11Q9NYG5 84 aa9.66□□□□□ -0.86
VPS29-207ENST00000549970 TSPAN13O95857 204 aa9.65□□□□□ -0.86
VPS29-207ENST00000549970 CRYGAP11844 174 aa9.65□□□□□ -0.86
VPS29-207ENST00000549970 CHCHD1Q96BP2 118 aaKnown RBP9.65□□□□□ -0.86
VPS29-207ENST00000549970 RPL24P83731 157 aaKnown RBP9.64□□□□□ -0.87
VPS29-207ENST00000549970 SFTA2Q6UW10 78 aa9.64□□□□□ -0.87
VPS29-207ENST00000549970 TYMSOSQ8TAI1 123 aa9.64□□□□□ -0.87
VPS29-207ENST00000549970 IFI27L1Q96BM0 104 aa9.64□□□□□ -0.87
VPS29-207ENST00000549970 TMEM238C9JI98 176 aa9.63□□□□□ -0.87
VPS29-207ENST00000549970 PRLHP81277 87 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms