RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 C9JAW5 83 aa7.62□□□□□ -1.19
CUX1-212ENST00000547394 LINC00158P58513 81 aa7.62□□□□□ -1.19
CUX1-212ENST00000547394 Q6ZTC4 211 aa7.62□□□□□ -1.19
CUX1-212ENST00000547394 H7C423 109 aa7.61□□□□□ -1.19
CUX1-212ENST00000547394 MRAPQ8TCY5 172 aa7.61□□□□□ -1.19
CUX1-212ENST00000547394 MT-ATP8P03928 68 aa7.61□□□□□ -1.19
CUX1-212ENST00000547394 CARD19Q96LW7 228 aa7.61□□□□□ -1.19
CUX1-212ENST00000547394 C6orf226Q5I0X4 101 aa7.61□□□□□ -1.19
CUX1-212ENST00000547394 ICOSQ9Y6W8 199 aa7.61□□□□□ -1.19
CUX1-212ENST00000547394 A0A087WZ39 114 aa7.6□□□□□ -1.19
CUX1-212ENST00000547394 C9orf116Q5BN46 136 aaPredicted RBP7.6□□□□□ -1.19
CUX1-212ENST00000547394 KLK12Q9UKR0 248 aa7.6□□□□□ -1.19
CUX1-212ENST00000547394 DNAH3Q8TD57 4116 aa7.6□□□□□ -1.19
CUX1-212ENST00000547394 TENM2Q9NT68 2774 aa7.6□□□□□ -1.19
CUX1-212ENST00000547394 COL7A1Q02388 2944 aa7.6□□□□□ -1.19
CUX1-212ENST00000547394 NANOS2P60321 138 aaKnown RBP7.6□□□□□ -1.19
CUX1-212ENST00000547394 REG3AQ06141 175 aa7.6□□□□□ -1.19
CUX1-212ENST00000547394 A0A0J9YWU9 116 aa7.59□□□□□ -1.19
CUX1-212ENST00000547394 WIPF1O43516 503 aa7.59□□□□□ -1.19
CUX1-212ENST00000547394 XGP55808 180 aa7.59□□□□□ -1.19
CUX1-212ENST00000547394 SS18Q15532 418 aa7.59□□□□□ -1.19
CUX1-212ENST00000547394 LYRM7Q5U5X0 104 aa7.59□□□□□ -1.19
CUX1-212ENST00000547394 TEN1Q86WV5 123 aa7.59□□□□□ -1.19
CUX1-212ENST00000547394 CHCHD10Q8WYQ3 142 aaPredicted RBP7.59□□□□□ -1.19
CUX1-212ENST00000547394 PPDPFLQ8WWR9 84 aa7.59□□□□□ -1.19
CUX1-212ENST00000547394 LYSTQ99698 3801 aa7.59□□□□□ -1.19
CUX1-212ENST00000547394 TIMM17BO60830 172 aa7.58□□□□□ -1.2
CUX1-212ENST00000547394 MRPL23Q16540 153 aaKnown RBP7.58□□□□□ -1.2
CUX1-212ENST00000547394 ANKRD29Q8N6D5 301 aa7.58□□□□□ -1.2
CUX1-212ENST00000547394 A0A1B0GUV1 79 aa7.57□□□□□ -1.2
CUX1-212ENST00000547394 C6orf223Q8N319 242 aa7.57□□□□□ -1.2
CUX1-212ENST00000547394 TRBV20-1A0A075B6N2 111 aa7.57□□□□□ -1.2
CUX1-212ENST00000547394 PRR3P79522 188 aaKnown RBP7.57□□□□□ -1.2
CUX1-212ENST00000547394 WFDC10BQ8IUB3 73 aa7.57□□□□□ -1.2
CUX1-212ENST00000547394 SLC25A20O43772 301 aa7.56□□□□□ -1.2
CUX1-212ENST00000547394 KPRPQ5T749 579 aaPredicted RBP7.56□□□□□ -1.2
CUX1-212ENST00000547394 IFITM1P13164 125 aa7.56□□□□□ -1.2
CUX1-212ENST00000547394 MALP21145 153 aa7.56□□□□□ -1.2
CUX1-212ENST00000547394 SHISA2Q6UWI4 295 aa7.56□□□□□ -1.2
CUX1-212ENST00000547394 CCL18P55774 89 aa7.55□□□□□ -1.2
CUX1-212ENST00000547394 DEFB121Q5J5C9 76 aa7.55□□□□□ -1.2
CUX1-212ENST00000547394 LYPD5Q6UWN5 251 aa7.55□□□□□ -1.2
CUX1-212ENST00000547394 LINC00337Q8N6G1 96 aa7.55□□□□□ -1.2
CUX1-212ENST00000547394 UBE2WQ96B02 151 aa7.55□□□□□ -1.2
CUX1-212ENST00000547394 SND1-IT1Q9HBX3 110 aa7.55□□□□□ -1.2
CUX1-212ENST00000547394 HERV-K104P63124 156 aa7.55□□□□□ -1.2
CUX1-212ENST00000547394 IGKV2-28A0A075B6P5 120 aa7.54□□□□□ -1.2
CUX1-212ENST00000547394 TRBV30A0A0K0K1B3 111 aa7.54□□□□□ -1.2
CUX1-212ENST00000547394 COX7A2LO14548 114 aa7.54□□□□□ -1.2
CUX1-212ENST00000547394 IGKV2D-28P01615 120 aa7.54□□□□□ -1.2
CUX1-212ENST00000547394 EGFEM1PQ0D2K5 195 aa7.54□□□□□ -1.2
CUX1-212ENST00000547394 LINC01620Q4KN68 170 aa7.54□□□□□ -1.2
CUX1-212ENST00000547394 C10orf25Q5T742 122 aa7.54□□□□□ -1.2
CUX1-212ENST00000547394 HUWE1Q7Z6Z7 4374 aaKnown RBP7.54□□□□□ -1.2
CUX1-212ENST00000547394 ATXN8Q156A1 80 aa7.53□□□□□ -1.2
CUX1-212ENST00000547394 LELP1Q5T871 98 aa7.53□□□□□ -1.2
CUX1-212ENST00000547394 TEX49A0A1B0GTD5 131 aa7.53□□□□□ -1.2
CUX1-212ENST00000547394 CD164L2Q6UWJ8 174 aa7.53□□□□□ -1.2
CUX1-212ENST00000547394 ENHOQ6UWT2 76 aa7.53□□□□□ -1.2
CUX1-212ENST00000547394 OR13C6PQ8NH95 151 aa7.53□□□□□ -1.2
CUX1-212ENST00000547394 NTN5Q8WTR8 489 aaPredicted RBP7.53□□□□□ -1.2
CUX1-212ENST00000547394 FAM218AQ96MZ4 157 aa7.52□□□□□ -1.21
CUX1-212ENST00000547394 COX6CP09669 75 aa7.51□□□□□ -1.21
CUX1-212ENST00000547394 KIAA0087Q14695 138 aa7.51□□□□□ -1.21
CUX1-212ENST00000547394 UNQ6190/PRO20217Q6UXQ8 127 aa7.51□□□□□ -1.21
CUX1-212ENST00000547394 CSMD3Q7Z407 3707 aa7.51□□□□□ -1.21
CUX1-212ENST00000547394 ESRGQ1W209 222 aa7.51□□□□□ -1.21
CUX1-212ENST00000547394 DEFB131BA0A096LNP1 70 aa7.5□□□□□ -1.21
CUX1-212ENST00000547394 CRPP02741 224 aa7.5□□□□□ -1.21
CUX1-212ENST00000547394 C11orf45Q8TAV5 145 aa7.5□□□□□ -1.21
CUX1-212ENST00000547394 Q9HAA7 133 aa7.5□□□□□ -1.21
CUX1-212ENST00000547394 HIGD2BQ4VC39 106 aa7.5□□□□□ -1.21
CUX1-212ENST00000547394 IBA57-AS1B1ANH7 110 aa7.49□□□□□ -1.21
CUX1-212ENST00000547394 Q8NDZ9 215 aa7.49□□□□□ -1.21
CUX1-212ENST00000547394 Q8IZM0 81 aa7.49□□□□□ -1.21
CUX1-212ENST00000547394 TRAV8-4A0A0B4J246 113 aa7.49□□□□□ -1.21
CUX1-212ENST00000547394 LST1O00453 97 aa7.49□□□□□ -1.21
CUX1-212ENST00000547394 SPAG11BQ08648 103 aa7.49□□□□□ -1.21
CUX1-212ENST00000547394 SMIM11BQ8TCY0 68 aa7.48□□□□□ -1.21
CUX1-212ENST00000547394 K7EIL1 84 aa7.48□□□□□ -1.21
CUX1-212ENST00000547394 ANAPC13Q9BS18 74 aa7.48□□□□□ -1.21
CUX1-212ENST00000547394 TRBV10-2A0A0K0K1G8 114 aa7.47□□□□□ -1.21
CUX1-212ENST00000547394 NCR3O14931 201 aa7.47□□□□□ -1.21
CUX1-212ENST00000547394 MDFIQ99750 246 aa7.46□□□□□ -1.21
CUX1-212ENST00000547394 XAGE1AQ9HD64 81 aa7.46□□□□□ -1.22
CUX1-212ENST00000547394 A0A087WYN8 130 aa7.45□□□□□ -1.22
CUX1-212ENST00000547394 COPS9Q8WXC6 57 aa7.45□□□□□ -1.22
CUX1-212ENST00000547394 PRR34Q9NV39 138 aa7.45□□□□□ -1.22
CUX1-212ENST00000547394 SNCGO76070 127 aa7.45□□□□□ -1.22
CUX1-212ENST00000547394 SLPIP03973 132 aa7.45□□□□□ -1.22
CUX1-212ENST00000547394 TRAV13-2A0A0B4J235 113 aa7.44□□□□□ -1.22
CUX1-212ENST00000547394 DNAH10Q8IVF4 4471 aa7.44□□□□□ -1.22
CUX1-212ENST00000547394 GAGE2BQ13066 116 aa7.43□□□□□ -1.22
CUX1-212ENST00000547394 GAGE2EQ4V326 116 aa7.43□□□□□ -1.22
CUX1-212ENST00000547394 GAGE2DQ9UEU5 116 aa7.43□□□□□ -1.22
CUX1-212ENST00000547394 IGKV2D-24A0A075B6R9 120 aa7.43□□□□□ -1.22
CUX1-212ENST00000547394 M0QXV9 152 aa7.43□□□□□ -1.22
CUX1-212ENST00000547394 NHLRC4P0CG21 123 aaPredicted RBP7.41□□□□□ -1.22
CUX1-212ENST00000547394 SS18L2Q9UHA2 77 aa7.41□□□□□ -1.22
CUX1-212ENST00000547394 C9orf129Q5T035 196 aaKnown RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms