RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 LINC00173Q6ZV60 143 aa5.84□□□□□ -1.47
VPS29-203ENST00000546588 SH2D6Q7Z4S9 175 aa5.84□□□□□ -1.47
VPS29-203ENST00000546588 FAM104AQ969W3 186 aa5.84□□□□□ -1.47
VPS29-203ENST00000546588 IFI27L1Q96BM0 104 aa5.84□□□□□ -1.47
VPS29-203ENST00000546588 NBEAL2Q6ZNJ1 2754 aa5.84□□□□□ -1.48
VPS29-203ENST00000546588 TENM3Q9P273 2699 aa5.83□□□□□ -1.48
VPS29-203ENST00000546588 MRPS36P82909 103 aaKnown RBP5.83□□□□□ -1.48
VPS29-203ENST00000546588 NTM-AS1Q6ZSK4 140 aa5.83□□□□□ -1.48
VPS29-203ENST00000546588 C3orf22Q8N5N4 141 aa5.83□□□□□ -1.48
VPS29-203ENST00000546588 C11orf45Q8TAV5 145 aa5.83□□□□□ -1.48
VPS29-203ENST00000546588 TMEM141Q96I45 108 aa5.83□□□□□ -1.48
VPS29-203ENST00000546588 NOTCH1P46531 2555 aa5.82□□□□□ -1.48
VPS29-203ENST00000546588 A0A0J9YWU9 116 aa5.82□□□□□ -1.48
VPS29-203ENST00000546588 FAM236AA0A1B0GUQ0 79 aa5.82□□□□□ -1.48
VPS29-203ENST00000546588 FAM236BA0A1B0GV22 79 aa5.82□□□□□ -1.48
VPS29-203ENST00000546588 DEFB4AO15263 64 aa5.82□□□□□ -1.48
VPS29-203ENST00000546588 PRB2P02812 416 aaPredicted RBP5.82□□□□□ -1.48
VPS29-203ENST00000546588 NMUP48645 174 aa5.82□□□□□ -1.48
VPS29-203ENST00000546588 MPV17L2Q567V2 206 aa5.82□□□□□ -1.48
VPS29-203ENST00000546588 FAM19A3Q7Z5A8 133 aa5.82□□□□□ -1.48
VPS29-203ENST00000546588 LINC00526Q96FQ7 95 aa5.82□□□□□ -1.48
VPS29-203ENST00000546588 AMELXQ99217 191 aa5.82□□□□□ -1.48
VPS29-203ENST00000546588 UBE2D4Q9Y2X8 147 aa5.82□□□□□ -1.48
VPS29-203ENST00000546588 PRKDCP78527 4128 aaKnown RBP5.82□□□□□ -1.48
VPS29-203ENST00000546588 DYNC2H1Q8NCM8 4307 aaKnown RBP5.81□□□□□ -1.48
VPS29-203ENST00000546588 MGAM2Q2M2H8 2515 aa5.81□□□□□ -1.48
VPS29-203ENST00000546588 TRAV9-2A0A087WT02 112 aa5.81□□□□□ -1.48
VPS29-203ENST00000546588 IGLV5-52A0A0A0MRZ9 124 aa5.81□□□□□ -1.48
VPS29-203ENST00000546588 TRBV6-8A0A0A6YYG3 113 aa5.81□□□□□ -1.48
VPS29-203ENST00000546588 LOC100131303A0A0U1RQF7 123 aa5.81□□□□□ -1.48
VPS29-203ENST00000546588 PRSS2P07478 247 aa5.81□□□□□ -1.48
VPS29-203ENST00000546588 IGLV4-3A0A075B6K6 122 aa5.8□□□□□ -1.48
VPS29-203ENST00000546588 TRBV25-1A0A075B6N4 114 aa5.8□□□□□ -1.48
VPS29-203ENST00000546588 A0A096LPF7 62 aa5.8□□□□□ -1.48
VPS29-203ENST00000546588 APOMO95445 188 aa5.8□□□□□ -1.48
VPS29-203ENST00000546588 KRTDAPP60985 99 aa5.8□□□□□ -1.48
VPS29-203ENST00000546588 RPL39P62891 51 aaKnown RBP5.8□□□□□ -1.48
VPS29-203ENST00000546588 SLC25A34Q6PIV7 304 aa5.8□□□□□ -1.48
VPS29-203ENST00000546588 Q6ZTC4 211 aa5.8□□□□□ -1.48
VPS29-203ENST00000546588 COPS9Q8WXC6 57 aa5.8□□□□□ -1.48
VPS29-203ENST00000546588 DPH3Q96FX2 82 aa5.8□□□□□ -1.48
VPS29-203ENST00000546588 SCGB3A1Q96QR1 104 aa5.8□□□□□ -1.48
VPS29-203ENST00000546588 TRBV20-1A0A075B6N2 111 aa5.79□□□□□ -1.48
VPS29-203ENST00000546588 A0A1B0GUV1 79 aa5.79□□□□□ -1.48
VPS29-203ENST00000546588 F8VRH5 84 aa5.79□□□□□ -1.48
VPS29-203ENST00000546588 H3BMG7 143 aa5.79□□□□□ -1.48
VPS29-203ENST00000546588 H3BUT2 72 aa5.79□□□□□ -1.48
VPS29-203ENST00000546588 C2orf48Q96LS8 159 aa5.79□□□□□ -1.48
VPS29-203ENST00000546588 CARD19Q96LW7 228 aa5.79□□□□□ -1.48
VPS29-203ENST00000546588 ICOSQ9Y6W8 199 aa5.79□□□□□ -1.48
VPS29-203ENST00000546588 DNAH7Q8WXX0 4024 aa5.78□□□□□ -1.48
VPS29-203ENST00000546588 TRAV10A0A0B4J240 114 aa5.78□□□□□ -1.48
VPS29-203ENST00000546588 TRACP01848 142 aa5.78□□□□□ -1.48
VPS29-203ENST00000546588 DEFB121Q5J5C9 76 aa5.78□□□□□ -1.48
VPS29-203ENST00000546588 NFE4Q86UQ8 179 aa5.78□□□□□ -1.48
VPS29-203ENST00000546588 C15orf53Q8NAA6 179 aa5.78□□□□□ -1.48
VPS29-203ENST00000546588 PHLDA1Q8WV24 401 aaPredicted RBP5.78□□□□□ -1.48
VPS29-203ENST00000546588 PPDPFLQ8WWR9 84 aa5.78□□□□□ -1.48
VPS29-203ENST00000546588 TMEM243Q9BU79 118 aa5.78□□□□□ -1.48
VPS29-203ENST00000546588 IGLV4-69A0A075B6H9 119 aa5.77□□□□□ -1.49
VPS29-203ENST00000546588 IGLV5-37A0A075B6J1 123 aa5.77□□□□□ -1.49
VPS29-203ENST00000546588 TRAV13-1A0A0B4J241 112 aa5.77□□□□□ -1.49
VPS29-203ENST00000546588 IGHV3-38A0A0C4DH36 116 aa5.77□□□□□ -1.49
VPS29-203ENST00000546588 CRYGAP11844 174 aa5.77□□□□□ -1.49
VPS29-203ENST00000546588 PLNP26678 52 aa5.77□□□□□ -1.49
VPS29-203ENST00000546588 LELP1Q5T871 98 aa5.77□□□□□ -1.49
VPS29-203ENST00000546588 SCGB1D4Q6XE38 83 aa5.77□□□□□ -1.49
VPS29-203ENST00000546588 Q6ZRU5 148 aa5.77□□□□□ -1.49
VPS29-203ENST00000546588 CDC42SE2Q9NRR3 84 aa5.77□□□□□ -1.49
VPS29-203ENST00000546588 IGLV5-45A0A087WSX0 123 aa5.76□□□□□ -1.49
VPS29-203ENST00000546588 DEFB131BA0A096LNP1 70 aa5.76□□□□□ -1.49
VPS29-203ENST00000546588 NANOS2P60321 138 aaKnown RBP5.76□□□□□ -1.49
VPS29-203ENST00000546588 MEGF8Q7Z7M0 2845 aa5.75□□□□□ -1.49
VPS29-203ENST00000546588 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.75□□□□□ -1.49
VPS29-203ENST00000546588 TRAV8-4A0A0B4J246 113 aa5.75□□□□□ -1.49
VPS29-203ENST00000546588 IGKV2-29A2NJV5 120 aaPredicted RBP5.75□□□□□ -1.49
VPS29-203ENST00000546588 NDUFC2-KCTD14E9PQ53 114 aa5.75□□□□□ -1.49
VPS29-203ENST00000546588 IGKCP01834 107 aa5.75□□□□□ -1.49
VPS29-203ENST00000546588 PRSS1P07477 247 aa5.75□□□□□ -1.49
VPS29-203ENST00000546588 PRR15Q8IV56 129 aa5.75□□□□□ -1.49
VPS29-203ENST00000546588 MRPL35Q9NZE8 188 aaKnown RBP5.75□□□□□ -1.49
VPS29-203ENST00000546588 A0A0J9YY99 117 aa5.74□□□□□ -1.49
VPS29-203ENST00000546588 C11orf86A6NJI1 115 aa5.74□□□□□ -1.49
VPS29-203ENST00000546588 UBE2D1P51668 147 aa5.74□□□□□ -1.49
VPS29-203ENST00000546588 LYPD5Q6UWN5 251 aa5.74□□□□□ -1.49
VPS29-203ENST00000546588 BRK1Q8WUW1 75 aa5.74□□□□□ -1.49
VPS29-203ENST00000546588 CSMD3Q7Z407 3707 aa5.74□□□□□ -1.49
VPS29-203ENST00000546588 ETDBQ3ZM63 59 aa5.73□□□□□ -1.49
VPS29-203ENST00000546588 CEMP1Q6PRD7 247 aaPredicted RBP5.73□□□□□ -1.49
VPS29-203ENST00000546588 UPK3BQ9BT76 320 aa5.73□□□□□ -1.49
VPS29-203ENST00000546588 IMUPQ9GZP8 106 aa5.73□□□□□ -1.49
VPS29-203ENST00000546588 SMIM26A0A096LP01 95 aa5.72□□□□□ -1.49
VPS29-203ENST00000546588 UBE2L6O14933 153 aa5.72□□□□□ -1.49
VPS29-203ENST00000546588 OPRPNQ99935 248 aaPredicted RBP5.72□□□□□ -1.49
VPS29-203ENST00000546588 PRR34Q9NV39 138 aa5.72□□□□□ -1.49
VPS29-203ENST00000546588 DNAH1Q9P2D7 4330 aa5.71□□□□□ -1.5
VPS29-203ENST00000546588 IGLV4-60A0A075B6I1 120 aa5.71□□□□□ -1.5
VPS29-203ENST00000546588 E9PLD3 99 aa5.71□□□□□ -1.5
VPS29-203ENST00000546588 HTN3P15516 51 aa5.71□□□□□ -1.5
VPS29-203ENST00000546588 ZNF22P17026 224 aaPredicted RBP5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms