RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 LOC100131303A0A0U1RQF7 123 aa10.27□□□□□ -0.77
LIMS1-215ENST00000544547 RPL28P46779 137 aaKnown RBP10.27□□□□□ -0.77
LIMS1-215ENST00000544547 MUC3AQ02505 3323 aa10.27□□□□□ -0.77
LIMS1-215ENST00000544547 IGHV4-31P0DP07 118 aa10.27□□□□□ -0.77
LIMS1-215ENST00000544547 NREPQ16612 68 aa10.27□□□□□ -0.77
LIMS1-215ENST00000544547 IBA57-AS1B1ANH7 110 aa10.26□□□□□ -0.77
LIMS1-215ENST00000544547 LINC00337Q8N6G1 96 aa10.26□□□□□ -0.77
LIMS1-215ENST00000544547 ATMQ13315 3056 aa10.26□□□□□ -0.77
LIMS1-215ENST00000544547 Q6YL49 198 aa10.26□□□□□ -0.77
LIMS1-215ENST00000544547 ATP5EP2Q5VTU8 51 aa10.26□□□□□ -0.77
LIMS1-215ENST00000544547 AVPP01185 164 aa10.25□□□□□ -0.77
LIMS1-215ENST00000544547 SOSTDC1Q6X4U4 206 aa10.25□□□□□ -0.77
LIMS1-215ENST00000544547 NDUFC2-KCTD14E9PQ53 114 aa10.25□□□□□ -0.77
LIMS1-215ENST00000544547 LINC00269Q8N2A0 174 aa10.25□□□□□ -0.77
LIMS1-215ENST00000544547 CDC42SE2Q9NRR3 84 aa10.24□□□□□ -0.77
LIMS1-215ENST00000544547 ZNF575Q86XF7 245 aa10.24□□□□□ -0.77
LIMS1-215ENST00000544547 LITAFQ99732 161 aa10.24□□□□□ -0.77
LIMS1-215ENST00000544547 CCKP06307 115 aa10.23□□□□□ -0.77
LIMS1-215ENST00000544547 DCHS1Q96JQ0 3298 aa10.23□□□□□ -0.77
LIMS1-215ENST00000544547 USP24Q9UPU5 2620 aa10.23□□□□□ -0.77
LIMS1-215ENST00000544547 DIRC1Q969H9 104 aa10.23□□□□□ -0.77
LIMS1-215ENST00000544547 V9GYY9 64 aa10.23□□□□□ -0.77
LIMS1-215ENST00000544547 DMDP11532 3685 aa10.22□□□□□ -0.77
LIMS1-215ENST00000544547 HIGD2BQ4VC39 106 aa10.22□□□□□ -0.77
LIMS1-215ENST00000544547 ANKRD17O75179 2603 aaKnown RBP10.22□□□□□ -0.77
LIMS1-215ENST00000544547 Q6ZQY7 126 aa10.21□□□□□ -0.77
LIMS1-215ENST00000544547 C18orf65Q6ZTR6 163 aa10.21□□□□□ -0.77
LIMS1-215ENST00000544547 LRCOL1A6NCL2 159 aa10.21□□□□□ -0.78
LIMS1-215ENST00000544547 LRBAP50851 2863 aa10.2□□□□□ -0.78
LIMS1-215ENST00000544547 SMIM26A0A096LP01 95 aa10.2□□□□□ -0.78
LIMS1-215ENST00000544547 INAFM1C9JVW0 142 aa10.2□□□□□ -0.78
LIMS1-215ENST00000544547 UBE2AP49459 152 aa10.2□□□□□ -0.78
LIMS1-215ENST00000544547 IGKV2-24A0A0C4DH68 120 aa10.19□□□□□ -0.78
LIMS1-215ENST00000544547 C11orf45Q8TAV5 145 aa10.19□□□□□ -0.78
LIMS1-215ENST00000544547 C1orf195Q5TG92 126 aa10.19□□□□□ -0.78
LIMS1-215ENST00000544547 IGLV1-40P01703 118 aa10.19□□□□□ -0.78
LIMS1-215ENST00000544547 RPS28P62857 69 aaKnown RBP10.19□□□□□ -0.78
LIMS1-215ENST00000544547 LINC00482Q8N8I6 264 aa10.19□□□□□ -0.78
LIMS1-215ENST00000544547 REG3AQ06141 175 aa10.19□□□□□ -0.78
LIMS1-215ENST00000544547 XAGE1AQ9HD64 81 aa10.19□□□□□ -0.78
LIMS1-215ENST00000544547 SERP1Q9Y6X1 66 aa10.19□□□□□ -0.78
LIMS1-215ENST00000544547 NDUFB1O75438 58 aa10.18□□□□□ -0.78
LIMS1-215ENST00000544547 PRR4Q16378 134 aa10.18□□□□□ -0.78
LIMS1-215ENST00000544547 ZZEF1O43149 2961 aa10.17□□□□□ -0.78
LIMS1-215ENST00000544547 BRI3O95415 125 aa10.17□□□□□ -0.78
LIMS1-215ENST00000544547 TRBV6-8A0A0A6YYG3 113 aa10.17□□□□□ -0.78
LIMS1-215ENST00000544547 TRAV7A0A075B6U4 112 aa10.17□□□□□ -0.78
LIMS1-215ENST00000544547 FAM19A4Q96LR4 140 aa10.16□□□□□ -0.78
LIMS1-215ENST00000544547 DMXL1Q9Y485 3027 aa10.16□□□□□ -0.78
LIMS1-215ENST00000544547 TRBV6-4A0A1B0GX49 114 aa10.16□□□□□ -0.78
LIMS1-215ENST00000544547 A8MTW9 85 aa10.16□□□□□ -0.78
LIMS1-215ENST00000544547 ZFHX4Q86UP3 3567 aa10.16□□□□□ -0.78
LIMS1-215ENST00000544547 IGLV4-60A0A075B6I1 120 aa10.15□□□□□ -0.78
LIMS1-215ENST00000544547 C9orf116Q5BN46 136 aaPredicted RBP10.15□□□□□ -0.78
LIMS1-215ENST00000544547 CHCHD10Q8WYQ3 142 aaPredicted RBP10.15□□□□□ -0.78
LIMS1-215ENST00000544547 COL27A1Q8IZC6 1860 aaPredicted RBP10.15□□□□□ -0.78
LIMS1-215ENST00000544547 BPY2O14599 106 aa10.15□□□□□ -0.78
LIMS1-215ENST00000544547 NTM-AS1Q6ZSK4 140 aa10.15□□□□□ -0.78
LIMS1-215ENST00000544547 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.15□□□□□ -0.78
LIMS1-215ENST00000544547 Q8N3U1 123 aa10.15□□□□□ -0.78
LIMS1-215ENST00000544547 Q8N814 137 aa10.15□□□□□ -0.78
LIMS1-215ENST00000544547 HIGD2AQ9BW72 106 aa10.15□□□□□ -0.78
LIMS1-215ENST00000544547 LYRM9A8MSI8 78 aa10.15□□□□□ -0.79
LIMS1-215ENST00000544547 C3orf84H3BNL1 204 aa10.14□□□□□ -0.79
LIMS1-215ENST00000544547 COX7BP24311 80 aa10.14□□□□□ -0.79
LIMS1-215ENST00000544547 MIFP14174 115 aa10.14□□□□□ -0.79
LIMS1-215ENST00000544547 PDE6GP18545 87 aa10.14□□□□□ -0.79
LIMS1-215ENST00000544547 ZNF843Q8N446 348 aa10.14□□□□□ -0.79
LIMS1-215ENST00000544547 DEFB131BA0A096LNP1 70 aa10.13□□□□□ -0.79
LIMS1-215ENST00000544547 IGLV5-39A0A0G2JS06 123 aa10.13□□□□□ -0.79
LIMS1-215ENST00000544547 FHL2Q14192 279 aa10.13□□□□□ -0.79
LIMS1-215ENST00000544547 H3BQ85 93 aa10.13□□□□□ -0.79
LIMS1-215ENST00000544547 MP68P56378 58 aa10.13□□□□□ -0.79
LIMS1-215ENST00000544547 WFDC10AQ9H1F0 79 aa10.13□□□□□ -0.79
LIMS1-215ENST00000544547 LINC00959A0A1B0GUT2 108 aa10.13□□□□□ -0.79
LIMS1-215ENST00000544547 LINC01006Q8NI28 216 aa10.13□□□□□ -0.79
LIMS1-215ENST00000544547 PRO0628Q9UI54 55 aa10.11□□□□□ -0.79
LIMS1-215ENST00000544547 A0A096LNI7 61 aa10.11□□□□□ -0.79
LIMS1-215ENST00000544547 ZNF702PQ9H963 129 aa10.11□□□□□ -0.79
LIMS1-215ENST00000544547 SPTSSBQ8NFR3 76 aa10.1□□□□□ -0.79
LIMS1-215ENST00000544547 LINC01561Q8N1V8 128 aa10.1□□□□□ -0.79
LIMS1-215ENST00000544547 CELA1Q9UNI1 258 aa10.1□□□□□ -0.79
LIMS1-215ENST00000544547 BBC3Q96PG8 261 aaPredicted RBP10.09□□□□□ -0.79
LIMS1-215ENST00000544547 NDUFC1O43677 76 aa10.09□□□□□ -0.79
LIMS1-215ENST00000544547 ATRQ13535 2644 aa10.08□□□□□ -0.8
LIMS1-215ENST00000544547 C4orf48Q5BLP8 95 aa10.08□□□□□ -0.8
LIMS1-215ENST00000544547 TNRC18O15417 2968 aaPredicted RBP10.07□□□□□ -0.8
LIMS1-215ENST00000544547 TRBV7-6A0A0J9YX20 115 aa10.07□□□□□ -0.8
LIMS1-215ENST00000544547 FAM19A3Q7Z5A8 133 aa10.07□□□□□ -0.8
LIMS1-215ENST00000544547 Q6ZVQ6 151 aa10.06□□□□□ -0.8
LIMS1-215ENST00000544547 MAST4O15021 2626 aa10.06□□□□□ -0.8
LIMS1-215ENST00000544547 PLA2G2AP14555 144 aa10.06□□□□□ -0.8
LIMS1-215ENST00000544547 LINC01547P58512 204 aaPredicted RBP10.06□□□□□ -0.8
LIMS1-215ENST00000544547 C9orf129Q5T035 196 aaKnown RBP10.06□□□□□ -0.8
LIMS1-215ENST00000544547 C1orf158Q8N1D5 194 aa10.06□□□□□ -0.8
LIMS1-215ENST00000544547 H0Y9J4 135 aa10.06□□□□□ -0.8
LIMS1-215ENST00000544547 Q8N9L7 120 aa10.06□□□□□ -0.8
LIMS1-215ENST00000544547 MGAM2Q2M2H8 2515 aa10.06□□□□□ -0.8
LIMS1-215ENST00000544547 LAMA5O15230 3695 aa10.05□□□□□ -0.8
LIMS1-215ENST00000544547 A0A087WZ39 114 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms