RNA–Protein interactions for RNA: ENST00000543939.5

COPS7A-218, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 3

Gene COPS7A, Length 1,728 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-218ENST00000543939 DAND5Q8N907 189 aa13.35□□□□□ -0.27
COPS7A-218ENST00000543939 NAA38Q9BRA0 125 aaKnown RBP13.34□□□□□ -0.27
COPS7A-218ENST00000543939 A0A0U1RRA0 63 aa13.33□□□□□ -0.27
COPS7A-218ENST00000543939 APOMO95445 188 aa13.33□□□□□ -0.27
COPS7A-218ENST00000543939 KRTAP26-1Q6PEX3 210 aa13.33□□□□□ -0.28
COPS7A-218ENST00000543939 KLK5Q9Y337 293 aaPredicted RBP13.33□□□□□ -0.28
COPS7A-218ENST00000543939 EIF4EBP3O60516 100 aaPredicted RBP13.32□□□□□ -0.28
COPS7A-218ENST00000543939 NPC2P61916 151 aa13.32□□□□□ -0.28
COPS7A-218ENST00000543939 VAMP3Q15836 100 aa13.32□□□□□ -0.28
COPS7A-218ENST00000543939 LINC00308Q8TCZ7 52 aa13.31□□□□□ -0.28
COPS7A-218ENST00000543939 UPK3BQ9BT76 320 aa13.31□□□□□ -0.28
COPS7A-218ENST00000543939 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.3□□□□□ -0.28
COPS7A-218ENST00000543939 IBA57-AS1B1ANH7 110 aa13.3□□□□□ -0.28
COPS7A-218ENST00000543939 A0A0B4J2C4 111 aa13.3□□□□□ -0.28
COPS7A-218ENST00000543939 A0A1W2PPM0 123 aa13.3□□□□□ -0.28
COPS7A-218ENST00000543939 CXCL5P42830 114 aa13.3□□□□□ -0.28
COPS7A-218ENST00000543939 CFAP161Q6P656 301 aa13.3□□□□□ -0.28
COPS7A-218ENST00000543939 C2orf82Q6UX34 121 aa13.3□□□□□ -0.28
COPS7A-218ENST00000543939 SOSTDC1Q6X4U4 206 aa13.29□□□□□ -0.28
COPS7A-218ENST00000543939 CKS1BP61024 79 aa13.28□□□□□ -0.28
COPS7A-218ENST00000543939 PPDPFQ9H3Y8 114 aa13.28□□□□□ -0.28
COPS7A-218ENST00000543939 PGPEP1Q9NXJ5 209 aa13.28□□□□□ -0.28
COPS7A-218ENST00000543939 APLNQ9ULZ1 77 aa13.28□□□□□ -0.28
COPS7A-218ENST00000543939 COPS9Q8WXC6 57 aa13.27□□□□□ -0.28
COPS7A-218ENST00000543939 PRO1854Q9UHT4 67 aa13.27□□□□□ -0.28
COPS7A-218ENST00000543939 ERG28Q9UKR5 140 aa13.27□□□□□ -0.28
COPS7A-218ENST00000543939 SPAG11BQ08648 103 aa13.27□□□□□ -0.29
COPS7A-218ENST00000543939 LINC00158P58513 81 aa13.26□□□□□ -0.29
COPS7A-218ENST00000543939 UBE2V1Q13404 147 aa13.26□□□□□ -0.29
COPS7A-218ENST00000543939 MIR7-3HGQ8N6C7 128 aa13.26□□□□□ -0.29
COPS7A-218ENST00000543939 C1orf43Q9BWL3 253 aa13.26□□□□□ -0.29
COPS7A-218ENST00000543939 PRKDCP78527 4128 aaKnown RBP13.26□□□□□ -0.29
COPS7A-218ENST00000543939 TSPAN13O95857 204 aa13.25□□□□□ -0.29
COPS7A-218ENST00000543939 DYNC2H1Q8NCM8 4307 aaKnown RBP13.25□□□□□ -0.29
COPS7A-218ENST00000543939 FABP2P12104 132 aa13.25□□□□□ -0.29
COPS7A-218ENST00000543939 PFN2P35080 140 aa13.24□□□□□ -0.29
COPS7A-218ENST00000543939 IGKV2D-24A0A075B6R9 120 aa13.23□□□□□ -0.29
COPS7A-218ENST00000543939 MEGF8Q7Z7M0 2845 aa13.22□□□□□ -0.29
COPS7A-218ENST00000543939 NUPR2A6NF83 97 aa13.22□□□□□ -0.29
COPS7A-218ENST00000543939 C6orf223Q8N319 242 aa13.22□□□□□ -0.29
COPS7A-218ENST00000543939 K7EP34 96 aa13.22□□□□□ -0.29
COPS7A-218ENST00000543939 LINC00526Q96FQ7 95 aa13.22□□□□□ -0.29
COPS7A-218ENST00000543939 Q9HAA7 133 aa13.22□□□□□ -0.29
COPS7A-218ENST00000543939 GAGE10A6NGK3 116 aa13.21□□□□□ -0.3
COPS7A-218ENST00000543939 SPCS1Q9Y6A9 102 aa13.21□□□□□ -0.3
COPS7A-218ENST00000543939 COX17Q14061 63 aa13.2□□□□□ -0.3
COPS7A-218ENST00000543939 UNQ6190/PRO20217Q6UXQ8 127 aa13.2□□□□□ -0.3
COPS7A-218ENST00000543939 NTN5Q8WTR8 489 aaPredicted RBP13.2□□□□□ -0.3
COPS7A-218ENST00000543939 C10orf25Q5T742 122 aa13.19□□□□□ -0.3
COPS7A-218ENST00000543939 GTF2H5Q6ZYL4 71 aa13.19□□□□□ -0.3
COPS7A-218ENST00000543939 C15orf56Q8N910 161 aa13.19□□□□□ -0.3
COPS7A-218ENST00000543939 C9orf116Q5BN46 136 aaPredicted RBP13.17□□□□□ -0.3
COPS7A-218ENST00000543939 GVQW2A0A096LPI5 108 aaPredicted RBP13.16□□□□□ -0.3
COPS7A-218ENST00000543939 H7C2G1 150 aa13.16□□□□□ -0.3
COPS7A-218ENST00000543939 HIGD2BQ4VC39 106 aa13.16□□□□□ -0.3
COPS7A-218ENST00000543939 UBE2DNLQ8IWF7 75 aa13.16□□□□□ -0.3
COPS7A-218ENST00000543939 SND1-IT1Q9HBX3 110 aa13.16□□□□□ -0.3
COPS7A-218ENST00000543939 LOC107984156A0A0G2JMH3 177 aa13.15□□□□□ -0.3
COPS7A-218ENST00000543939 ZNF561-AS1K7EIQ3 104 aa13.15□□□□□ -0.3
COPS7A-218ENST00000543939 ARL17AQ8IVW1 177 aa13.15□□□□□ -0.3
COPS7A-218ENST00000543939 RMI2Q96E14 147 aa13.14□□□□□ -0.31
COPS7A-218ENST00000543939 RPL13AP40429 203 aaKnown RBP13.13□□□□□ -0.31
COPS7A-218ENST00000543939 Q1RN00 199 aa13.13□□□□□ -0.31
COPS7A-218ENST00000543939 C2orf48Q96LS8 159 aa13.13□□□□□ -0.31
COPS7A-218ENST00000543939 C6orf48Q9UBA6 75 aa13.13□□□□□ -0.31
COPS7A-218ENST00000543939 DNAH1Q9P2D7 4330 aa13.12□□□□□ -0.31
COPS7A-218ENST00000543939 DNAH7Q8WXX0 4024 aa13.12□□□□□ -0.31
COPS7A-218ENST00000543939 MUC7Q8TAX7 377 aa13.12□□□□□ -0.31
COPS7A-218ENST00000543939 LYRM7Q5U5X0 104 aa13.11□□□□□ -0.31
COPS7A-218ENST00000543939 CAMK2N2Q96S95 79 aa13.11□□□□□ -0.31
COPS7A-218ENST00000543939 KRTAP1-5Q9BYS1 174 aa13.11□□□□□ -0.31
COPS7A-218ENST00000543939 CSMD3Q7Z407 3707 aa13.11□□□□□ -0.31
COPS7A-218ENST00000543939 IGKV2-28A0A075B6P5 120 aa13.1□□□□□ -0.31
COPS7A-218ENST00000543939 IGKV2D-28P01615 120 aa13.1□□□□□ -0.31
COPS7A-218ENST00000543939 PSMB2P49721 201 aa13.1□□□□□ -0.31
COPS7A-218ENST00000543939 TRBV30A0A0K0K1B3 111 aa13.1□□□□□ -0.31
COPS7A-218ENST00000543939 F8WDY8 70 aa13.1□□□□□ -0.31
COPS7A-218ENST00000543939 CASC10Q5T4H9 136 aa13.1□□□□□ -0.31
COPS7A-218ENST00000543939 TRAV13-2A0A0B4J235 113 aa13.08□□□□□ -0.32
COPS7A-218ENST00000543939 TRIAP1O43715 76 aa13.08□□□□□ -0.32
COPS7A-218ENST00000543939 Q6ZRU5 148 aa13.08□□□□□ -0.32
COPS7A-218ENST00000543939 LINC00337Q8N6G1 96 aa13.08□□□□□ -0.32
COPS7A-218ENST00000543939 SCGB1C2P0DMR2 95 aa13.07□□□□□ -0.32
COPS7A-218ENST00000543939 USP17L23D6RBM5 183 aa13.05□□□□□ -0.32
COPS7A-218ENST00000543939 H3BMG7 143 aa13.05□□□□□ -0.32
COPS7A-218ENST00000543939 TRBV20-1A0A075B6N2 111 aa13.05□□□□□ -0.32
COPS7A-218ENST00000543939 NDUFC2O95298 119 aa13.05□□□□□ -0.32
COPS7A-218ENST00000543939 TCL1BO95988 128 aa13.05□□□□□ -0.32
COPS7A-218ENST00000543939 PLECQ15149 4684 aaKnown RBP13.04□□□□□ -0.32
COPS7A-218ENST00000543939 SYCNQ0VAF6 134 aa13.03□□□□□ -0.32
COPS7A-218ENST00000543939 LYSTQ99698 3801 aa13.02□□□□□ -0.33
COPS7A-218ENST00000543939 COX6CP09669 75 aa13.01□□□□□ -0.33
COPS7A-218ENST00000543939 Q8NDZ9 215 aa13.01□□□□□ -0.33
COPS7A-218ENST00000543939 STARD9Q9P2P6 4700 aa13□□□□□ -0.33
COPS7A-218ENST00000543939 FBN3Q75N90 2809 aa13□□□□□ -0.33
COPS7A-218ENST00000543939 PRR3P79522 188 aaKnown RBP12.99□□□□□ -0.33
COPS7A-218ENST00000543939 TTC32Q5I0X7 151 aa12.99□□□□□ -0.33
COPS7A-218ENST00000543939 NBDYA0A0U1RRE5 68 aa12.99□□□□□ -0.33
COPS7A-218ENST00000543939 SLPIP03973 132 aa12.99□□□□□ -0.33
COPS7A-218ENST00000543939 PRO0461Q9UI25 63 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms