RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 CD164Q04900 197 aa6.8□□□□□ -1.32
CLIP1-212ENST00000540304 ANK2Q01484 3957 aa6.79□□□□□ -1.32
CLIP1-212ENST00000540304 LYRM9A8MSI8 78 aa6.79□□□□□ -1.32
CLIP1-212ENST00000540304 IGHV4-30-4P0DP06 118 aa6.79□□□□□ -1.32
CLIP1-212ENST00000540304 LEPROTO15243 131 aa6.79□□□□□ -1.32
CLIP1-212ENST00000540304 LGALS3P17931 250 aaKnown RBP6.79□□□□□ -1.32
CLIP1-212ENST00000540304 TSPEAR-AS2P59090 65 aa6.79□□□□□ -1.32
CLIP1-212ENST00000540304 SCGB1D4Q6XE38 83 aa6.79□□□□□ -1.32
CLIP1-212ENST00000540304 TMEM243Q9BU79 118 aa6.79□□□□□ -1.32
CLIP1-212ENST00000540304 FAM240AA0A1B0GVK7 77 aa6.78□□□□□ -1.32
CLIP1-212ENST00000540304 FAM222AQ5U5X8 452 aa6.78□□□□□ -1.32
CLIP1-212ENST00000540304 FP248Q71RG6 208 aaPredicted RBP6.78□□□□□ -1.32
CLIP1-212ENST00000540304 CIRBPQ14011 172 aaKnown RBP6.78□□□□□ -1.32
CLIP1-212ENST00000540304 C11orf45Q8TAV5 145 aa6.78□□□□□ -1.32
CLIP1-212ENST00000540304 IGHV4-28A0A0C4DH34 117 aa6.77□□□□□ -1.33
CLIP1-212ENST00000540304 UBE2L6O14933 153 aa6.77□□□□□ -1.33
CLIP1-212ENST00000540304 DEFB4AO15263 64 aa6.77□□□□□ -1.33
CLIP1-212ENST00000540304 MIFP14174 115 aa6.77□□□□□ -1.33
CLIP1-212ENST00000540304 SMCR5Q8TEV8 140 aa6.77□□□□□ -1.33
CLIP1-212ENST00000540304 CMYA5Q8N3K9 4069 aa6.77□□□□□ -1.33
CLIP1-212ENST00000540304 CYSRT1A8MQ03 144 aa6.77□□□□□ -1.33
CLIP1-212ENST00000540304 H7C423 109 aa6.77□□□□□ -1.33
CLIP1-212ENST00000540304 ATOX1O00244 68 aa6.77□□□□□ -1.33
CLIP1-212ENST00000540304 SPANXDQ9BXN6 97 aa6.77□□□□□ -1.33
CLIP1-212ENST00000540304 EPM2AB3EWF7 344 aa6.76□□□□□ -1.33
CLIP1-212ENST00000540304 NPC2P61916 151 aa6.76□□□□□ -1.33
CLIP1-212ENST00000540304 SS18Q15532 418 aa6.76□□□□□ -1.33
CLIP1-212ENST00000540304 NOTCH1P46531 2555 aa6.76□□□□□ -1.33
CLIP1-212ENST00000540304 A0A0J9YY99 117 aa6.76□□□□□ -1.33
CLIP1-212ENST00000540304 NDUFC2O95298 119 aa6.76□□□□□ -1.33
CLIP1-212ENST00000540304 Q8NAQ8 132 aa6.76□□□□□ -1.33
CLIP1-212ENST00000540304 PRO0255Q9UI72 69 aa6.76□□□□□ -1.33
CLIP1-212ENST00000540304 COL6A5A8TX70 2615 aa6.76□□□□□ -1.33
CLIP1-212ENST00000540304 TRBV6-8A0A0A6YYG3 113 aa6.75□□□□□ -1.33
CLIP1-212ENST00000540304 IGHV3-30-3P0DP02 117 aa6.75□□□□□ -1.33
CLIP1-212ENST00000540304 CDC42SE2Q9NRR3 84 aa6.75□□□□□ -1.33
CLIP1-212ENST00000540304 IGLV5-45A0A087WSX0 123 aa6.75□□□□□ -1.33
CLIP1-212ENST00000540304 IGHV1-58A0A0C4DH39 117 aa6.75□□□□□ -1.33
CLIP1-212ENST00000540304 GYPEP15421 78 aa6.75□□□□□ -1.33
CLIP1-212ENST00000540304 KRTAP10-11P60412 298 aa6.75□□□□□ -1.33
CLIP1-212ENST00000540304 HIST1H4AP62805 103 aaKnown RBP6.75□□□□□ -1.33
CLIP1-212ENST00000540304 EGFEM1PQ0D2K5 195 aa6.75□□□□□ -1.33
CLIP1-212ENST00000540304 H3BT86 120 aa6.74□□□□□ -1.33
CLIP1-212ENST00000540304 DAD1P61803 113 aa6.74□□□□□ -1.33
CLIP1-212ENST00000540304 FAM19A3Q7Z5A8 133 aa6.74□□□□□ -1.33
CLIP1-212ENST00000540304 LINC00242Q5T6M2 205 aa6.74□□□□□ -1.33
CLIP1-212ENST00000540304 C5orf38Q86SI9 138 aa6.74□□□□□ -1.33
CLIP1-212ENST00000540304 VSIG2Q96IQ7 327 aa6.74□□□□□ -1.33
CLIP1-212ENST00000540304 TRAV8-3A0A0A6YYJ7 113 aa6.73□□□□□ -1.33
CLIP1-212ENST00000540304 CDKN2A-AS1Q9UH64 79 aa6.73□□□□□ -1.33
CLIP1-212ENST00000540304 TRBV10-2A0A0K0K1G8 114 aa6.73□□□□□ -1.33
CLIP1-212ENST00000540304 PAX4O43316 350 aa6.73□□□□□ -1.33
CLIP1-212ENST00000540304 CFC1BP0CG36 223 aa6.73□□□□□ -1.33
CLIP1-212ENST00000540304 CFC1P0CG37 223 aa6.73□□□□□ -1.33
CLIP1-212ENST00000540304 SPART-AS1P0CW21 52 aa6.73□□□□□ -1.33
CLIP1-212ENST00000540304 C2orf82Q6UX34 121 aa6.73□□□□□ -1.33
CLIP1-212ENST00000540304 CELA1Q9UNI1 258 aa6.73□□□□□ -1.33
CLIP1-212ENST00000540304 COX6A2Q02221 97 aa6.72□□□□□ -1.33
CLIP1-212ENST00000540304 SERP2Q8N6R1 65 aa6.72□□□□□ -1.33
CLIP1-212ENST00000540304 LINC01600Q96MT4 127 aa6.72□□□□□ -1.33
CLIP1-212ENST00000540304 SERP1Q9Y6X1 66 aa6.72□□□□□ -1.33
CLIP1-212ENST00000540304 TENM3Q9P273 2699 aa6.72□□□□□ -1.33
CLIP1-212ENST00000540304 H3BS24 57 aa6.72□□□□□ -1.33
CLIP1-212ENST00000540304 LINC00643Q86TS7 51 aa6.72□□□□□ -1.33
CLIP1-212ENST00000540304 LINC00474Q9P2X8 69 aa6.71□□□□□ -1.33
CLIP1-212ENST00000540304 A0A096LPF7 62 aa6.71□□□□□ -1.34
CLIP1-212ENST00000540304 NDUFA12Q9UI09 145 aa6.71□□□□□ -1.34
CLIP1-212ENST00000540304 A0A0J9YXY3 114 aa6.7□□□□□ -1.34
CLIP1-212ENST00000540304 H7C2G1 150 aa6.7□□□□□ -1.34
CLIP1-212ENST00000540304 IGHV3-30P01768 117 aa6.7□□□□□ -1.34
CLIP1-212ENST00000540304 IGHV3-30-5P0DP03 117 aa6.7□□□□□ -1.34
CLIP1-212ENST00000540304 RPL18AQ02543 176 aaKnown RBP6.7□□□□□ -1.34
CLIP1-212ENST00000540304 ATXN8Q156A1 80 aa6.7□□□□□ -1.34
CLIP1-212ENST00000540304 IGLV4-60A0A075B6I1 120 aa6.7□□□□□ -1.34
CLIP1-212ENST00000540304 SMIM26A0A096LP01 95 aa6.7□□□□□ -1.34
CLIP1-212ENST00000540304 CXCL5P42830 114 aa6.7□□□□□ -1.34
CLIP1-212ENST00000540304 IGKV3OR2-268A0A0C4DH90 116 aa6.69□□□□□ -1.34
CLIP1-212ENST00000540304 IGLV5-39A0A0G2JS06 123 aa6.69□□□□□ -1.34
CLIP1-212ENST00000540304 DEFB121Q5J5C9 76 aa6.69□□□□□ -1.34
CLIP1-212ENST00000540304 PRO1854Q9UHT4 67 aa6.69□□□□□ -1.34
CLIP1-212ENST00000540304 NBEAL1Q6ZS30 2694 aa6.69□□□□□ -1.34
CLIP1-212ENST00000540304 SMIM1B2RUZ4 78 aa6.68□□□□□ -1.34
CLIP1-212ENST00000540304 NDUFA1O15239 70 aa6.68□□□□□ -1.34
CLIP1-212ENST00000540304 A0A1B0GUV1 79 aa6.67□□□□□ -1.34
CLIP1-212ENST00000540304 HTN3P15516 51 aa6.67□□□□□ -1.34
CLIP1-212ENST00000540304 EIF4EBP3O60516 100 aaPredicted RBP6.67□□□□□ -1.34
CLIP1-212ENST00000540304 LITAFQ99732 161 aa6.67□□□□□ -1.34
CLIP1-212ENST00000540304 NDUFC2-KCTD14E9PQ53 114 aa6.66□□□□□ -1.34
CLIP1-212ENST00000540304 IGHV3-33P01772 117 aa6.66□□□□□ -1.34
CLIP1-212ENST00000540304 MRPL55Q7Z7F7 128 aaKnown RBP6.66□□□□□ -1.34
CLIP1-212ENST00000540304 TIMM17BO60830 172 aa6.66□□□□□ -1.34
CLIP1-212ENST00000540304 ACYP1P07311 99 aa6.65□□□□□ -1.34
CLIP1-212ENST00000540304 MUSTN1Q8IVN3 82 aa6.65□□□□□ -1.34
CLIP1-212ENST00000540304 ICOSQ9Y6W8 199 aa6.65□□□□□ -1.34
CLIP1-212ENST00000540304 LINC00959A0A1B0GUT2 108 aa6.65□□□□□ -1.34
CLIP1-212ENST00000540304 C11orf68Q9H3H3 251 aaKnown RBP6.65□□□□□ -1.34
CLIP1-212ENST00000540304 Q9H8V8 135 aa6.65□□□□□ -1.34
CLIP1-212ENST00000540304 MIAQ16674 131 aa6.64□□□□□ -1.35
CLIP1-212ENST00000540304 Q6ZRU5 148 aa6.64□□□□□ -1.35
CLIP1-212ENST00000540304 IGHV3OR16-9A0A0B4J2B5 98 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms