RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 INAFM1C9JVW0 142 aa7.22□□□□□ -1.25
TRAF1-202ENST00000540010 NREPQ16612 68 aa7.22□□□□□ -1.25
TRAF1-202ENST00000540010 GCN1Q92616 2671 aaKnown RBP7.22□□□□□ -1.25
TRAF1-202ENST00000540010 UBE2BP63146 152 aa7.22□□□□□ -1.25
TRAF1-202ENST00000540010 HIGD2BQ4VC39 106 aa7.22□□□□□ -1.25
TRAF1-202ENST00000540010 UQCRQO14949 82 aa7.22□□□□□ -1.25
TRAF1-202ENST00000540010 SCXQ7RTU7 201 aa7.22□□□□□ -1.25
TRAF1-202ENST00000540010 TRBV6-8A0A0A6YYG3 113 aa7.21□□□□□ -1.25
TRAF1-202ENST00000540010 C6orf99Q4VX62 202 aa7.21□□□□□ -1.25
TRAF1-202ENST00000540010 C16orf95Q9H693 158 aa7.21□□□□□ -1.26
TRAF1-202ENST00000540010 REG3AQ06141 175 aa7.2□□□□□ -1.26
TRAF1-202ENST00000540010 LINC00242Q5T6M2 205 aa7.2□□□□□ -1.26
TRAF1-202ENST00000540010 ENHOQ6UWT2 76 aa7.2□□□□□ -1.26
TRAF1-202ENST00000540010 LINC00482Q8N8I6 264 aa7.2□□□□□ -1.26
TRAF1-202ENST00000540010 ETDCA0A1B0GVM5 59 aa7.2□□□□□ -1.26
TRAF1-202ENST00000540010 DIRC1Q969H9 104 aa7.2□□□□□ -1.26
TRAF1-202ENST00000540010 CHCHD10Q8WYQ3 142 aaPredicted RBP7.2□□□□□ -1.26
TRAF1-202ENST00000540010 FUSP35637 526 aaKnown RBP eCLIP7.2□□□□□ -1.26
TRAF1-202ENST00000540010 IBA57-AS1B1ANH7 110 aa7.19□□□□□ -1.26
TRAF1-202ENST00000540010 C9orf66Q5T8R8 295 aa7.19□□□□□ -1.26
TRAF1-202ENST00000540010 SMIM11BQ8TCY0 68 aa7.19□□□□□ -1.26
TRAF1-202ENST00000540010 UPK3BQ9BT76 320 aa7.19□□□□□ -1.26
TRAF1-202ENST00000540010 LINC00694P0DN24 101 aa7.19□□□□□ -1.26
TRAF1-202ENST00000540010 CXCL5P42830 114 aa7.18□□□□□ -1.26
TRAF1-202ENST00000540010 COX6A2Q02221 97 aa7.18□□□□□ -1.26
TRAF1-202ENST00000540010 CDK2AP2O75956 126 aa7.18□□□□□ -1.26
TRAF1-202ENST00000540010 C3orf22Q8N5N4 141 aa7.18□□□□□ -1.26
TRAF1-202ENST00000540010 NF1P21359 2839 aa7.18□□□□□ -1.26
TRAF1-202ENST00000540010 FHL3Q13643 280 aa7.18□□□□□ -1.26
TRAF1-202ENST00000540010 ODF3L2Q3SX64 289 aa7.18□□□□□ -1.26
TRAF1-202ENST00000540010 TIMM17BO60830 172 aa7.17□□□□□ -1.26
TRAF1-202ENST00000540010 CDC42SE2Q9NRR3 84 aa7.17□□□□□ -1.26
TRAF1-202ENST00000540010 TRBV6-4A0A1B0GX49 114 aa7.17□□□□□ -1.26
TRAF1-202ENST00000540010 CCL18P55774 89 aa7.17□□□□□ -1.26
TRAF1-202ENST00000540010 Q6ZSN1 163 aa7.17□□□□□ -1.26
TRAF1-202ENST00000540010 WFDC9Q8NEX5 89 aa7.17□□□□□ -1.26
TRAF1-202ENST00000540010 PDZD2O15018 2839 aa7.16□□□□□ -1.26
TRAF1-202ENST00000540010 USP17L23D6RBM5 183 aa7.16□□□□□ -1.26
TRAF1-202ENST00000540010 CDIP1Q9H305 208 aa7.16□□□□□ -1.26
TRAF1-202ENST00000540010 SMIM1B2RUZ4 78 aa7.15□□□□□ -1.26
TRAF1-202ENST00000540010 TMEM258P61165 79 aa7.15□□□□□ -1.26
TRAF1-202ENST00000540010 SMCPP49901 116 aaPredicted RBP7.15□□□□□ -1.26
TRAF1-202ENST00000540010 CHCHD7Q9BUK0 85 aa7.15□□□□□ -1.26
TRAF1-202ENST00000540010 KIF25-AS1Q9Y6Z4 181 aa7.15□□□□□ -1.26
TRAF1-202ENST00000540010 COX7BP24311 80 aa7.15□□□□□ -1.27
TRAF1-202ENST00000540010 A0A087WVE0 104 aa7.15□□□□□ -1.27
TRAF1-202ENST00000540010 LINC01546A6NGU7 62 aa7.15□□□□□ -1.27
TRAF1-202ENST00000540010 PRR3P79522 188 aaKnown RBP7.15□□□□□ -1.27
TRAF1-202ENST00000540010 Q6ZQY7 126 aa7.15□□□□□ -1.27
TRAF1-202ENST00000540010 LINC00959A0A1B0GUT2 108 aa7.14□□□□□ -1.27
TRAF1-202ENST00000540010 Q9UF83 564 aa7.14□□□□□ -1.27
TRAF1-202ENST00000540010 NBPF19A0A087WUL8 3843 aa7.13□□□□□ -1.27
TRAF1-202ENST00000540010 AMELXQ99217 191 aa7.13□□□□□ -1.27
TRAF1-202ENST00000540010 FAM110AQ9BQ89 295 aa7.13□□□□□ -1.27
TRAF1-202ENST00000540010 ATRQ13535 2644 aa7.13□□□□□ -1.27
TRAF1-202ENST00000540010 IGLV4-60A0A075B6I1 120 aa7.13□□□□□ -1.27
TRAF1-202ENST00000540010 LINC00315P59091 139 aa7.13□□□□□ -1.27
TRAF1-202ENST00000540010 IMUPQ9GZP8 106 aa7.13□□□□□ -1.27
TRAF1-202ENST00000540010 IGLV1-51P01701 117 aa7.12□□□□□ -1.27
TRAF1-202ENST00000540010 C9orf116Q5BN46 136 aaPredicted RBP7.12□□□□□ -1.27
TRAF1-202ENST00000540010 BPY2O14599 106 aa7.11□□□□□ -1.27
TRAF1-202ENST00000540010 COX7CP15954 63 aa7.11□□□□□ -1.27
TRAF1-202ENST00000540010 C1orf158Q8N1D5 194 aa7.11□□□□□ -1.27
TRAF1-202ENST00000540010 RMI2Q96E14 147 aa7.11□□□□□ -1.27
TRAF1-202ENST00000540010 SNURFQ9Y675 71 aa7.11□□□□□ -1.27
TRAF1-202ENST00000540010 C5orf47Q569G3 176 aa7.11□□□□□ -1.27
TRAF1-202ENST00000540010 SERP2Q8N6R1 65 aa7.11□□□□□ -1.27
TRAF1-202ENST00000540010 PRO0461Q9UI25 63 aa7.11□□□□□ -1.27
TRAF1-202ENST00000540010 A0A096LNI7 61 aa7.1□□□□□ -1.27
TRAF1-202ENST00000540010 IGKV2-24A0A0C4DH68 120 aa7.1□□□□□ -1.27
TRAF1-202ENST00000540010 NDUFS5O43920 106 aa7.1□□□□□ -1.27
TRAF1-202ENST00000540010 SETXQ7Z333 2677 aaKnown RBP7.1□□□□□ -1.27
TRAF1-202ENST00000540010 C3orf84H3BNL1 204 aa7.1□□□□□ -1.27
TRAF1-202ENST00000540010 PDE6GP18545 87 aa7.1□□□□□ -1.27
TRAF1-202ENST00000540010 KLK5Q9Y337 293 aaPredicted RBP7.1□□□□□ -1.27
TRAF1-202ENST00000540010 MGAM2Q2M2H8 2515 aa7.1□□□□□ -1.27
TRAF1-202ENST00000540010 A0A087WYN8 130 aa7.1□□□□□ -1.27
TRAF1-202ENST00000540010 A8MTW9 85 aa7.1□□□□□ -1.27
TRAF1-202ENST00000540010 MPLKIPQ8TAP9 179 aa7.09□□□□□ -1.27
TRAF1-202ENST00000540010 CCKP06307 115 aa7.09□□□□□ -1.27
TRAF1-202ENST00000540010 CD164L2Q6UWJ8 174 aa7.09□□□□□ -1.27
TRAF1-202ENST00000540010 FAM240AA0A1B0GVK7 77 aa7.09□□□□□ -1.27
TRAF1-202ENST00000540010 Q6Q795 121 aa7.09□□□□□ -1.27
TRAF1-202ENST00000540010 BRK1Q8WUW1 75 aa7.09□□□□□ -1.27
TRAF1-202ENST00000540010 ZNF469Q96JG9 3925 aaPredicted RBP7.08□□□□□ -1.28
TRAF1-202ENST00000540010 IGKV2-28A0A075B6P5 120 aa7.08□□□□□ -1.28
TRAF1-202ENST00000540010 IGKV2D-28P01615 120 aa7.08□□□□□ -1.28
TRAF1-202ENST00000540010 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.08□□□□□ -1.28
TRAF1-202ENST00000540010 HIGD2AQ9BW72 106 aa7.08□□□□□ -1.28
TRAF1-202ENST00000540010 FAM236DA0A1B0GTK5 79 aa7.08□□□□□ -1.28
TRAF1-202ENST00000540010 FAM236CP0DP71 79 aa7.08□□□□□ -1.28
TRAF1-202ENST00000540010 KRTAP10-3P60369 221 aa7.08□□□□□ -1.28
TRAF1-202ENST00000540010 UNQ6190/PRO20217Q6UXQ8 127 aa7.08□□□□□ -1.28
TRAF1-202ENST00000540010 LYRM9A8MSI8 78 aa7.07□□□□□ -1.28
TRAF1-202ENST00000540010 C11orf72Q8NBR9 251 aa7.07□□□□□ -1.28
TRAF1-202ENST00000540010 SMIM9A6NGZ8 99 aa7.06□□□□□ -1.28
TRAF1-202ENST00000540010 RPL28P46779 137 aaKnown RBP7.06□□□□□ -1.28
TRAF1-202ENST00000540010 BEAN1Q3B7T3 259 aa7.06□□□□□ -1.28
TRAF1-202ENST00000540010 CYSRT1A8MQ03 144 aa7.06□□□□□ -1.28
TRAF1-202ENST00000540010 MP68P56378 58 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms