RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 C3orf22Q8N5N4 141 aa14.19□□□□□ -0.14
TMEM260-203ENST00000539559 PF4P02776 101 aa14.18□□□□□ -0.14
TMEM260-203ENST00000539559 CLPSL2Q6UWE3 100 aa14.18□□□□□ -0.14
TMEM260-203ENST00000539559 HECTD1Q9ULT8 2610 aa14.17□□□□□ -0.14
TMEM260-203ENST00000539559 TRBV6-8A0A0A6YYG3 113 aa14.17□□□□□ -0.14
TMEM260-203ENST00000539559 MTORP42345 2549 aa14.16□□□□□ -0.14
TMEM260-203ENST00000539559 TRAV25A0A0B4J276 109 aa14.16□□□□□ -0.14
TMEM260-203ENST00000539559 PRR3P79522 188 aaKnown RBP14.16□□□□□ -0.14
TMEM260-203ENST00000539559 C16orf95Q9H693 158 aa14.16□□□□□ -0.14
TMEM260-203ENST00000539559 LINC00846Q9NV44 126 aa14.16□□□□□ -0.14
TMEM260-203ENST00000539559 LINC01006Q8NI28 216 aa14.16□□□□□ -0.14
TMEM260-203ENST00000539559 A0A087WVE0 104 aa14.15□□□□□ -0.14
TMEM260-203ENST00000539559 XCL1P47992 114 aa14.15□□□□□ -0.14
TMEM260-203ENST00000539559 C16orf74Q96GX8 76 aa14.15□□□□□ -0.14
TMEM260-203ENST00000539559 SMR3AQ99954 134 aa14.15□□□□□ -0.14
TMEM260-203ENST00000539559 TRBV6-4A0A1B0GX49 114 aa14.14□□□□□ -0.15
TMEM260-203ENST00000539559 DEFB130BP0DP73 79 aa14.14□□□□□ -0.15
TMEM260-203ENST00000539559 DEFB130AP0DP74 79 aa14.14□□□□□ -0.15
TMEM260-203ENST00000539559 HILS1P60008 231 aa14.14□□□□□ -0.15
TMEM260-203ENST00000539559 FHL2Q14192 279 aa14.14□□□□□ -0.15
TMEM260-203ENST00000539559 PPDPFQ9H3Y8 114 aa14.14□□□□□ -0.15
TMEM260-203ENST00000539559 A0A096LPF7 62 aa14.14□□□□□ -0.15
TMEM260-203ENST00000539559 TMEM126AQ9H061 195 aa14.14□□□□□ -0.15
TMEM260-203ENST00000539559 UQCRQO14949 82 aa14.13□□□□□ -0.15
TMEM260-203ENST00000539559 C6orf226Q5I0X4 101 aa14.13□□□□□ -0.15
TMEM260-203ENST00000539559 A0A087WZ39 114 aa14.12□□□□□ -0.15
TMEM260-203ENST00000539559 IBA57-AS1B1ANH7 110 aa14.12□□□□□ -0.15
TMEM260-203ENST00000539559 CYSTM1Q9H1C7 97 aa14.12□□□□□ -0.15
TMEM260-203ENST00000539559 CXCL5P42830 114 aa14.11□□□□□ -0.15
TMEM260-203ENST00000539559 LINC00959A0A1B0GUT2 108 aa14.11□□□□□ -0.15
TMEM260-203ENST00000539559 C2orf48Q96LS8 159 aa14.1□□□□□ -0.15
TMEM260-203ENST00000539559 LOC107984640A0A0U1RRK4 108 aa14.1□□□□□ -0.15
TMEM260-203ENST00000539559 LINC00526Q96FQ7 95 aa14.1□□□□□ -0.15
TMEM260-203ENST00000539559 H0YGX0 51 aa14.09□□□□□ -0.15
TMEM260-203ENST00000539559 CSNK1G2-AS1Q8NCQ2 148 aa14.09□□□□□ -0.15
TMEM260-203ENST00000539559 HIVEP2P31629 2446 aa14.09□□□□□ -0.15
TMEM260-203ENST00000539559 LY6G6DO95868 133 aa14.09□□□□□ -0.15
TMEM260-203ENST00000539559 COX7CP15954 63 aa14.08□□□□□ -0.15
TMEM260-203ENST00000539559 C19orf73Q9NVV2 129 aa14.08□□□□□ -0.15
TMEM260-203ENST00000539559 hADV29S1A0JD25 119 aa14.08□□□□□ -0.16
TMEM260-203ENST00000539559 OVOL2Q9BRP0 275 aa14.08□□□□□ -0.16
TMEM260-203ENST00000539559 NOTCH2Q04721 2471 aa14.07□□□□□ -0.16
TMEM260-203ENST00000539559 SS18Q15532 418 aa14.07□□□□□ -0.16
TMEM260-203ENST00000539559 OBSCN-AS1Q96MR7 158 aa14.06□□□□□ -0.16
TMEM260-203ENST00000539559 HIST1H4AP62805 103 aaKnown RBP14.06□□□□□ -0.16
TMEM260-203ENST00000539559 A0A1B0GX51 115 aa14.05□□□□□ -0.16
TMEM260-203ENST00000539559 GYPEP15421 78 aa14.04□□□□□ -0.16
TMEM260-203ENST00000539559 ANK3Q12955 4377 aaKnown RBP14.04□□□□□ -0.16
TMEM260-203ENST00000539559 Q8N3U1 123 aa14.03□□□□□ -0.16
TMEM260-203ENST00000539559 WFDC9Q8NEX5 89 aa14.03□□□□□ -0.16
TMEM260-203ENST00000539559 ORMDL1Q9P0S3 153 aa14.03□□□□□ -0.16
TMEM260-203ENST00000539559 C9orf116Q5BN46 136 aaPredicted RBP14.02□□□□□ -0.16
TMEM260-203ENST00000539559 LINC01561Q8N1V8 128 aa14.02□□□□□ -0.16
TMEM260-203ENST00000539559 ATOX1O00244 68 aa14.02□□□□□ -0.17
TMEM260-203ENST00000539559 IGLV10-54A0A075B6I4 117 aa14.01□□□□□ -0.17
TMEM260-203ENST00000539559 NANOS2P60321 138 aaKnown RBP14.01□□□□□ -0.17
TMEM260-203ENST00000539559 RPL18AQ02543 176 aaKnown RBP14.01□□□□□ -0.17
TMEM260-203ENST00000539559 IGLV1-51P01701 117 aa14□□□□□ -0.17
TMEM260-203ENST00000539559 Q6JHZ5 121 aa14□□□□□ -0.17
TMEM260-203ENST00000539559 CFAP161Q6P656 301 aa13.99□□□□□ -0.17
TMEM260-203ENST00000539559 OTOGQ6ZRI0 2925 aa13.98□□□□□ -0.17
TMEM260-203ENST00000539559 Q8NDZ9 215 aa13.97□□□□□ -0.17
TMEM260-203ENST00000539559 INAFM1C9JVW0 142 aa13.96□□□□□ -0.17
TMEM260-203ENST00000539559 CRYGAP11844 174 aa13.96□□□□□ -0.17
TMEM260-203ENST00000539559 LINC00269Q8N2A0 174 aa13.96□□□□□ -0.18
TMEM260-203ENST00000539559 USP17L23D6RBM5 183 aa13.95□□□□□ -0.18
TMEM260-203ENST00000539559 DEFB4AO15263 64 aa13.95□□□□□ -0.18
TMEM260-203ENST00000539559 Q8N814 137 aa13.95□□□□□ -0.18
TMEM260-203ENST00000539559 CCKP06307 115 aa13.95□□□□□ -0.18
TMEM260-203ENST00000539559 Q8IZM0 81 aa13.95□□□□□ -0.18
TMEM260-203ENST00000539559 KIR2DL5BQ8NHK3 375 aa13.93□□□□□ -0.18
TMEM260-203ENST00000539559 VWFP04275 2813 aa13.92□□□□□ -0.18
TMEM260-203ENST00000539559 CMC4P56277 68 aaPredicted RBP13.92□□□□□ -0.18
TMEM260-203ENST00000539559 FAM19A1Q7Z5A9 133 aa13.91□□□□□ -0.18
TMEM260-203ENST00000539559 C6orf99Q4VX62 202 aa13.91□□□□□ -0.18
TMEM260-203ENST00000539559 KIAA0087Q14695 138 aa13.9□□□□□ -0.18
TMEM260-203ENST00000539559 SERP2Q8N6R1 65 aa13.9□□□□□ -0.18
TMEM260-203ENST00000539559 KRTAP10-3P60369 221 aa13.89□□□□□ -0.19
TMEM260-203ENST00000539559 TRAV23DV6A0A075B6W5 121 aa13.89□□□□□ -0.19
TMEM260-203ENST00000539559 ENHOQ6UWT2 76 aa13.88□□□□□ -0.19
TMEM260-203ENST00000539559 A0A1B0GUV1 79 aa13.88□□□□□ -0.19
TMEM260-203ENST00000539559 ANGP03950 147 aaKnown RBP13.88□□□□□ -0.19
TMEM260-203ENST00000539559 CHCHD10Q8WYQ3 142 aaPredicted RBP13.88□□□□□ -0.19
TMEM260-203ENST00000539559 UPK3BQ9BT76 320 aa13.88□□□□□ -0.19
TMEM260-203ENST00000539559 C6orf223Q8N319 242 aa13.87□□□□□ -0.19
TMEM260-203ENST00000539559 LINC00167Q96N53 147 aa13.87□□□□□ -0.19
TMEM260-203ENST00000539559 FAM19A5Q7Z5A7 132 aaPredicted RBP13.87□□□□□ -0.19
TMEM260-203ENST00000539559 SPATA3Q8NHX4 192 aa13.87□□□□□ -0.19
TMEM260-203ENST00000539559 J3KT08 172 aa13.86□□□□□ -0.19
TMEM260-203ENST00000539559 LINC00482Q8N8I6 264 aa13.86□□□□□ -0.19
TMEM260-203ENST00000539559 C10orf25Q5T742 122 aa13.86□□□□□ -0.19
TMEM260-203ENST00000539559 X6R8D5 127 aa13.86□□□□□ -0.19
TMEM260-203ENST00000539559 DSCR8Q96T75 97 aa13.85□□□□□ -0.19
TMEM260-203ENST00000539559 PRO0255Q9UI72 69 aa13.85□□□□□ -0.19
TMEM260-203ENST00000539559 NSD1Q96L73 2696 aaPredicted RBP13.85□□□□□ -0.19
TMEM260-203ENST00000539559 TMEM256-PLSCR3K7ERE1 68 aa13.85□□□□□ -0.19
TMEM260-203ENST00000539559 M0R2N4 97 aa13.85□□□□□ -0.19
TMEM260-203ENST00000539559 JMJD7-PLA2G4BH0Y9G9 81 aa13.84□□□□□ -0.19
TMEM260-203ENST00000539559 S100A7L2Q5SY68 101 aa13.83□□□□□ -0.2
TMEM260-203ENST00000539559 CD164L2Q6UWJ8 174 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms