RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 C15orf53Q8NAA6 179 aa7.55□□□□□ -1.2
CLIP1-210ENST00000538120 SPANXDQ9BXN6 97 aa7.55□□□□□ -1.2
CLIP1-210ENST00000538120 F8P00451 2351 aa7.55□□□□□ -1.2
CLIP1-210ENST00000538120 TTC32Q5I0X7 151 aa7.55□□□□□ -1.2
CLIP1-210ENST00000538120 TRGV4A0A0C4DH28 118 aa7.54□□□□□ -1.2
CLIP1-210ENST00000538120 CDKN2A-AS1Q9UH64 79 aa7.54□□□□□ -1.2
CLIP1-210ENST00000538120 KRTAP24-1Q3LI83 254 aa7.54□□□□□ -1.2
CLIP1-210ENST00000538120 FLNBO75369 2602 aaKnown RBP7.54□□□□□ -1.2
CLIP1-210ENST00000538120 DEFB130BP0DP73 79 aa7.53□□□□□ -1.2
CLIP1-210ENST00000538120 DEFB130AP0DP74 79 aa7.53□□□□□ -1.2
CLIP1-210ENST00000538120 LINC01561Q8N1V8 128 aa7.53□□□□□ -1.2
CLIP1-210ENST00000538120 LINC01600Q96MT4 127 aa7.53□□□□□ -1.2
CLIP1-210ENST00000538120 COX6A2Q02221 97 aa7.53□□□□□ -1.2
CLIP1-210ENST00000538120 ZNF625Q96I27 306 aaPredicted RBP7.53□□□□□ -1.2
CLIP1-210ENST00000538120 DEFB135Q30KP9 77 aa7.52□□□□□ -1.21
CLIP1-210ENST00000538120 CYSRT1A8MQ03 144 aa7.52□□□□□ -1.21
CLIP1-210ENST00000538120 LST1O00453 97 aa7.52□□□□□ -1.21
CLIP1-210ENST00000538120 IFITM1P13164 125 aa7.52□□□□□ -1.21
CLIP1-210ENST00000538120 COX6CP09669 75 aa7.51□□□□□ -1.21
CLIP1-210ENST00000538120 APOC4P55056 127 aa7.51□□□□□ -1.21
CLIP1-210ENST00000538120 MEIG1Q5JSS6 88 aa7.51□□□□□ -1.21
CLIP1-210ENST00000538120 CMYA5Q8N3K9 4069 aa7.51□□□□□ -1.21
CLIP1-210ENST00000538120 LOC107984640A0A0U1RRK4 108 aa7.5□□□□□ -1.21
CLIP1-210ENST00000538120 H3BT86 120 aa7.5□□□□□ -1.21
CLIP1-210ENST00000538120 C1orf195Q5TG92 126 aa7.5□□□□□ -1.21
CLIP1-210ENST00000538120 FAM222AQ5U5X8 452 aa7.5□□□□□ -1.21
CLIP1-210ENST00000538120 TMEM243Q9BU79 118 aa7.5□□□□□ -1.21
CLIP1-210ENST00000538120 CDC42SE2Q9NRR3 84 aa7.5□□□□□ -1.21
CLIP1-210ENST00000538120 IGLV5-45A0A087WSX0 123 aa7.5□□□□□ -1.21
CLIP1-210ENST00000538120 DEFB4AO15263 64 aa7.5□□□□□ -1.21
CLIP1-210ENST00000538120 FAM19A3Q7Z5A8 133 aa7.5□□□□□ -1.21
CLIP1-210ENST00000538120 PRR26Q8N8Z3 221 aa7.5□□□□□ -1.21
CLIP1-210ENST00000538120 NBEAL2Q6ZNJ1 2754 aa7.49□□□□□ -1.21
CLIP1-210ENST00000538120 IGHV4-28A0A0C4DH34 117 aa7.49□□□□□ -1.21
CLIP1-210ENST00000538120 IGHV4-30-4P0DP06 118 aa7.49□□□□□ -1.21
CLIP1-210ENST00000538120 LINC00242Q5T6M2 205 aa7.49□□□□□ -1.21
CLIP1-210ENST00000538120 FBN1P35555 2871 aaKnown RBP7.49□□□□□ -1.21
CLIP1-210ENST00000538120 LYRM9A8MSI8 78 aa7.49□□□□□ -1.21
CLIP1-210ENST00000538120 Q9H8V8 135 aa7.49□□□□□ -1.21
CLIP1-210ENST00000538120 NDUFA1O15239 70 aa7.48□□□□□ -1.21
CLIP1-210ENST00000538120 KRTAP10-11P60412 298 aa7.48□□□□□ -1.21
CLIP1-210ENST00000538120 Q6Q795 121 aa7.48□□□□□ -1.21
CLIP1-210ENST00000538120 SOSTDC1Q6X4U4 206 aa7.48□□□□□ -1.21
CLIP1-210ENST00000538120 Q8NAQ8 132 aa7.48□□□□□ -1.21
CLIP1-210ENST00000538120 TRBV6-8A0A0A6YYG3 113 aa7.47□□□□□ -1.21
CLIP1-210ENST00000538120 LINC00308Q8TCZ7 52 aa7.47□□□□□ -1.21
CLIP1-210ENST00000538120 UBE2L6O14933 153 aa7.47□□□□□ -1.21
CLIP1-210ENST00000538120 TIMM17BO60830 172 aa7.46□□□□□ -1.21
CLIP1-210ENST00000538120 GYPEP15421 78 aa7.46□□□□□ -1.21
CLIP1-210ENST00000538120 CELA1Q9UNI1 258 aa7.46□□□□□ -1.21
CLIP1-210ENST00000538120 TRAV13-1A0A0B4J241 112 aa7.46□□□□□ -1.22
CLIP1-210ENST00000538120 PRIMA1Q86XR5 153 aa7.46□□□□□ -1.22
CLIP1-210ENST00000538120 CHCHD5Q9BSY4 110 aa7.46□□□□□ -1.22
CLIP1-210ENST00000538120 PRO0255Q9UI72 69 aa7.46□□□□□ -1.22
CLIP1-210ENST00000538120 MIFP14174 115 aa7.45□□□□□ -1.22
CLIP1-210ENST00000538120 HERVK_113P63121 156 aa7.45□□□□□ -1.22
CLIP1-210ENST00000538120 DEFB121Q5J5C9 76 aa7.45□□□□□ -1.22
CLIP1-210ENST00000538120 IGLV4-60A0A075B6I1 120 aa7.45□□□□□ -1.22
CLIP1-210ENST00000538120 C3orf56Q8N813 242 aa7.45□□□□□ -1.22
CLIP1-210ENST00000538120 PKIGQ9Y2B9 76 aa7.45□□□□□ -1.22
CLIP1-210ENST00000538120 IGLV5-39A0A0G2JS06 123 aa7.44□□□□□ -1.22
CLIP1-210ENST00000538120 SMIM1B2RUZ4 78 aa7.44□□□□□ -1.22
CLIP1-210ENST00000538120 CIRBPQ14011 172 aaKnown RBP7.44□□□□□ -1.22
CLIP1-210ENST00000538120 C11orf45Q8TAV5 145 aa7.44□□□□□ -1.22
CLIP1-210ENST00000538120 DNAH3Q8TD57 4116 aa7.44□□□□□ -1.22
CLIP1-210ENST00000538120 FAM240AA0A1B0GVK7 77 aa7.43□□□□□ -1.22
CLIP1-210ENST00000538120 EGFEM1PQ0D2K5 195 aa7.43□□□□□ -1.22
CLIP1-210ENST00000538120 SMCR5Q8TEV8 140 aa7.43□□□□□ -1.22
CLIP1-210ENST00000538120 PAX4O43316 350 aa7.43□□□□□ -1.22
CLIP1-210ENST00000538120 DAD1P61803 113 aa7.43□□□□□ -1.22
CLIP1-210ENST00000538120 HRCT1Q6UXD1 115 aa7.43□□□□□ -1.22
CLIP1-210ENST00000538120 FAM218AQ96MZ4 157 aa7.43□□□□□ -1.22
CLIP1-210ENST00000538120 COX7A2LO14548 114 aa7.42□□□□□ -1.22
CLIP1-210ENST00000538120 A0A096LPF7 62 aa7.42□□□□□ -1.22
CLIP1-210ENST00000538120 CD164Q04900 197 aa7.42□□□□□ -1.22
CLIP1-210ENST00000538120 C22orf24Q9Y442 160 aa7.42□□□□□ -1.22
CLIP1-210ENST00000538120 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.42□□□□□ -1.22
CLIP1-210ENST00000538120 SPART-AS1P0CW21 52 aa7.41□□□□□ -1.22
CLIP1-210ENST00000538120 TRBV7-7A0A0K0K1E9 115 aa7.4□□□□□ -1.22
CLIP1-210ENST00000538120 ATP5G1P05496 136 aa7.4□□□□□ -1.22
CLIP1-210ENST00000538120 Q5XG85 94 aa7.4□□□□□ -1.22
CLIP1-210ENST00000538120 IGKV3OR2-268A0A0C4DH90 116 aa7.4□□□□□ -1.23
CLIP1-210ENST00000538120 FAM236AA0A1B0GUQ0 79 aa7.4□□□□□ -1.23
CLIP1-210ENST00000538120 FAM236BA0A1B0GV22 79 aa7.4□□□□□ -1.23
CLIP1-210ENST00000538120 ANK2Q01484 3957 aa7.4□□□□□ -1.23
CLIP1-210ENST00000538120 FAM236DA0A1B0GTK5 79 aa7.39□□□□□ -1.23
CLIP1-210ENST00000538120 FAM236CP0DP71 79 aa7.39□□□□□ -1.23
CLIP1-210ENST00000538120 Q9HAA7 133 aa7.39□□□□□ -1.23
CLIP1-210ENST00000538120 BAALC-AS2P0C853 105 aa7.39□□□□□ -1.23
CLIP1-210ENST00000538120 A0A1B0GUV1 79 aa7.38□□□□□ -1.23
CLIP1-210ENST00000538120 IGHV3OR16-9A0A0B4J2B5 98 aa7.38□□□□□ -1.23
CLIP1-210ENST00000538120 STAB1Q9NY15 2570 aa7.38□□□□□ -1.23
CLIP1-210ENST00000538120 PKD1L1Q8TDX9 2849 aa7.37□□□□□ -1.23
CLIP1-210ENST00000538120 LINC00959A0A1B0GUT2 108 aa7.37□□□□□ -1.23
CLIP1-210ENST00000538120 BAHCC1Q9P281 2608 aa7.37□□□□□ -1.23
CLIP1-210ENST00000538120 PRYO14603 147 aa7.37□□□□□ -1.23
CLIP1-210ENST00000538120 HTN3P15516 51 aa7.37□□□□□ -1.23
CLIP1-210ENST00000538120 LINC00337Q8N6G1 96 aa7.36□□□□□ -1.23
CLIP1-210ENST00000538120 TRACP01848 142 aa7.36□□□□□ -1.23
CLIP1-210ENST00000538120 C9orf129Q5T035 196 aaKnown RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms