RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 NXT2Q9NPJ8 142 aaKnown RBP8.45□□□□□ -1.06
SYNE1-235ENST00000537033 IGLV1-50A0A075B6I6 118 aa8.44□□□□□ -1.06
SYNE1-235ENST00000537033 SEC11AP67812 179 aa8.44□□□□□ -1.06
SYNE1-235ENST00000537033 C6orf226Q5I0X4 101 aa8.44□□□□□ -1.06
SYNE1-235ENST00000537033 C9orf129Q5T035 196 aaKnown RBP8.44□□□□□ -1.06
SYNE1-235ENST00000537033 ZC2HC1BQ5TFG8 222 aa8.44□□□□□ -1.06
SYNE1-235ENST00000537033 KRTAP11-1Q8IUC1 163 aa8.44□□□□□ -1.06
SYNE1-235ENST00000537033 HERVK_113P63121 156 aa8.43□□□□□ -1.06
SYNE1-235ENST00000537033 Q8IZM0 81 aa8.43□□□□□ -1.06
SYNE1-235ENST00000537033 ALKBH7Q9BT30 221 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-235ENST00000537033 GEMIN7Q9H840 131 aaKnown RBP8.43□□□□□ -1.06
SYNE1-235ENST00000537033 IGIPA6NJ69 53 aa8.42□□□□□ -1.06
SYNE1-235ENST00000537033 SCO1O75880 301 aa8.42□□□□□ -1.06
SYNE1-235ENST00000537033 FAM19A3Q7Z5A8 133 aa8.42□□□□□ -1.06
SYNE1-235ENST00000537033 KRTAP7-1Q8IUC3 87 aa8.42□□□□□ -1.06
SYNE1-235ENST00000537033 RPL13AP40429 203 aaKnown RBP8.41□□□□□ -1.06
SYNE1-235ENST00000537033 LBHQ53QV2 105 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-235ENST00000537033 LINC00469Q8N7U9 141 aa8.4□□□□□ -1.06
SYNE1-235ENST00000537033 TIMM17AQ99595 171 aa8.4□□□□□ -1.06
SYNE1-235ENST00000537033 F8VRH5 84 aa8.39□□□□□ -1.07
SYNE1-235ENST00000537033 NUPR1O60356 82 aa8.39□□□□□ -1.07
SYNE1-235ENST00000537033 CXCL5P42830 114 aa8.39□□□□□ -1.07
SYNE1-235ENST00000537033 RHEBQ15382 184 aa8.39□□□□□ -1.07
SYNE1-235ENST00000537033 XAGE1AQ9HD64 81 aa8.39□□□□□ -1.07
SYNE1-235ENST00000537033 CDKN2A-AS1Q9UH64 79 aa8.39□□□□□ -1.07
SYNE1-235ENST00000537033 KRTAP1-4P0C5Y4 121 aa8.38□□□□□ -1.07
SYNE1-235ENST00000537033 TOMM6Q96B49 74 aa8.38□□□□□ -1.07
SYNE1-235ENST00000537033 C22orf24Q9Y442 160 aa8.38□□□□□ -1.07
SYNE1-235ENST00000537033 ZNF861PO60384 105 aa8.37□□□□□ -1.07
SYNE1-235ENST00000537033 ERASQ7Z444 233 aa8.37□□□□□ -1.07
SYNE1-235ENST00000537033 SCGB3A1Q96QR1 104 aa8.37□□□□□ -1.07
SYNE1-235ENST00000537033 RPS10P5Q9NQ39 176 aa8.37□□□□□ -1.07
SYNE1-235ENST00000537033 TRAV9-1A0A075B6T8 112 aa8.36□□□□□ -1.07
SYNE1-235ENST00000537033 LINC01549A6NIU2 74 aa8.36□□□□□ -1.07
SYNE1-235ENST00000537033 KIAA1644Q3SXP7 199 aa8.36□□□□□ -1.07
SYNE1-235ENST00000537033 MRPL55Q7Z7F7 128 aaKnown RBP8.35□□□□□ -1.07
SYNE1-235ENST00000537033 TP73-AS1Q9UF72 201 aa8.35□□□□□ -1.07
SYNE1-235ENST00000537033 TINCRA0A1B0GVN0 87 aa8.34□□□□□ -1.07
SYNE1-235ENST00000537033 S100PP25815 95 aa8.34□□□□□ -1.07
SYNE1-235ENST00000537033 PDZD11Q5EBL8 140 aa8.34□□□□□ -1.07
SYNE1-235ENST00000537033 COX7B2Q8TF08 81 aa8.34□□□□□ -1.07
SYNE1-235ENST00000537033 SMCO4Q9NRQ5 59 aa8.34□□□□□ -1.07
SYNE1-235ENST00000537033 SMIM1B2RUZ4 78 aa8.33□□□□□ -1.08
SYNE1-235ENST00000537033 RPL28P46779 137 aaKnown RBP8.33□□□□□ -1.08
SYNE1-235ENST00000537033 CBLN2Q8IUK8 224 aa8.33□□□□□ -1.08
SYNE1-235ENST00000537033 PRR4Q16378 134 aa8.32□□□□□ -1.08
SYNE1-235ENST00000537033 GNB1LQ9BYB4 327 aa8.32□□□□□ -1.08
SYNE1-235ENST00000537033 BCE1O60756 84 aa8.31□□□□□ -1.08
SYNE1-235ENST00000537033 CST9LQ9H4G1 147 aa8.31□□□□□ -1.08
SYNE1-235ENST00000537033 RNF213Q63HN8 5207 aa8.3□□□□□ -1.08
SYNE1-235ENST00000537033 IGLV5-45A0A087WSX0 123 aa8.3□□□□□ -1.08
SYNE1-235ENST00000537033 H3BRM9 83 aa8.3□□□□□ -1.08
SYNE1-235ENST00000537033 PMVKQ15126 192 aa8.3□□□□□ -1.08
SYNE1-235ENST00000537033 COX19Q49B96 90 aa8.3□□□□□ -1.08
SYNE1-235ENST00000537033 FA2HQ7L5A8 372 aa8.3□□□□□ -1.08
SYNE1-235ENST00000537033 NKAPP1Q8N9T2 125 aa8.3□□□□□ -1.08
SYNE1-235ENST00000537033 LINC01546A6NGU7 62 aa8.29□□□□□ -1.08
SYNE1-235ENST00000537033 SPINK8P0C7L1 97 aa8.29□□□□□ -1.08
SYNE1-235ENST00000537033 MRPL18Q9H0U6 180 aaKnown RBP8.29□□□□□ -1.08
SYNE1-235ENST00000537033 RPL37AP8A6NKH3 93 aa8.28□□□□□ -1.08
SYNE1-235ENST00000537033 ATP5LO75964 103 aa8.28□□□□□ -1.08
SYNE1-235ENST00000537033 RAB5BP61020 215 aa8.28□□□□□ -1.08
SYNE1-235ENST00000537033 LINC00167Q96N53 147 aa8.28□□□□□ -1.08
SYNE1-235ENST00000537033 GAGE10A6NGK3 116 aa8.27□□□□□ -1.09
SYNE1-235ENST00000537033 TMA7Q9Y2S6 64 aaKnown RBP8.27□□□□□ -1.09
SYNE1-235ENST00000537033 CRYGAP11844 174 aa8.26□□□□□ -1.09
SYNE1-235ENST00000537033 UBE2AP49459 152 aa8.26□□□□□ -1.09
SYNE1-235ENST00000537033 FABP9Q0Z7S8 132 aa8.26□□□□□ -1.09
SYNE1-235ENST00000537033 LPAP08519 4548 aa8.25□□□□□ -1.09
SYNE1-235ENST00000537033 IGLV5-37A0A075B6J1 123 aa8.25□□□□□ -1.09
SYNE1-235ENST00000537033 COLCA2A8K830 154 aa8.25□□□□□ -1.09
SYNE1-235ENST00000537033 NDUFA6P56556 154 aa8.25□□□□□ -1.09
SYNE1-235ENST00000537033 TYMSOSQ8TAI1 123 aa8.25□□□□□ -1.09
SYNE1-235ENST00000537033 TSPAN13O95857 204 aa8.24□□□□□ -1.09
SYNE1-235ENST00000537033 YPEL4Q96NS1 127 aa8.24□□□□□ -1.09
SYNE1-235ENST00000537033 A0A087X002 238 aa8.23□□□□□ -1.09
SYNE1-235ENST00000537033 IGLC3P0DOY3 106 aa8.23□□□□□ -1.09
SYNE1-235ENST00000537033 PFN2P35080 140 aa8.23□□□□□ -1.09
SYNE1-235ENST00000537033 IGKV2-28A0A075B6P5 120 aa8.21□□□□□ -1.1
SYNE1-235ENST00000537033 IGLV5-39A0A0G2JS06 123 aa8.21□□□□□ -1.1
SYNE1-235ENST00000537033 IGKV2D-28P01615 120 aa8.21□□□□□ -1.1
SYNE1-235ENST00000537033 HBDP02042 147 aa8.2□□□□□ -1.1
SYNE1-235ENST00000537033 ERG28Q9UKR5 140 aa8.2□□□□□ -1.1
SYNE1-235ENST00000537033 ZNF22P17026 224 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-235ENST00000537033 RPL24P83731 157 aaKnown RBP8.19□□□□□ -1.1
SYNE1-235ENST00000537033 COX17Q14061 63 aa8.19□□□□□ -1.1
SYNE1-235ENST00000537033 FAM229BQ4G0N7 80 aa8.19□□□□□ -1.1
SYNE1-235ENST00000537033 SFTA2Q6UW10 78 aa8.19□□□□□ -1.1
SYNE1-235ENST00000537033 KRTAP13-1Q8IUC0 172 aa8.19□□□□□ -1.1
SYNE1-235ENST00000537033 SND1-IT1Q9HBX3 110 aa8.19□□□□□ -1.1
SYNE1-235ENST00000537033 LINC00614P0C842 121 aa8.18□□□□□ -1.1
SYNE1-235ENST00000537033 ANAPC11Q9NYG5 84 aa8.18□□□□□ -1.1
SYNE1-235ENST00000537033 TRAPPC1Q9Y5R8 145 aa8.18□□□□□ -1.1
SYNE1-235ENST00000537033 A0A096LNJ9 63 aa8.17□□□□□ -1.1
SYNE1-235ENST00000537033 IGKV2D-26A0A0A0MRZ7 120 aa8.17□□□□□ -1.1
SYNE1-235ENST00000537033 A0A0U1RQV1 116 aa8.17□□□□□ -1.1
SYNE1-235ENST00000537033 VPREB1P12018 145 aa8.17□□□□□ -1.1
SYNE1-235ENST00000537033 PRLHP81277 87 aa8.17□□□□□ -1.1
SYNE1-235ENST00000537033 TMEM170BQ5T4T1 132 aa8.17□□□□□ -1.1
SYNE1-235ENST00000537033 FAM19A1Q7Z5A9 133 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms