RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 OBSCN-AS1Q96MR7 158 aa8.04□□□□□ -1.12
SYNE1-234ENST00000536990 DNAL4O96015 105 aa8.03□□□□□ -1.12
SYNE1-234ENST00000536990 PFN2P35080 140 aa8.03□□□□□ -1.12
SYNE1-234ENST00000536990 LINC00959A0A1B0GUT2 108 aa8.03□□□□□ -1.12
SYNE1-234ENST00000536990 ATP5G1P05496 136 aa8.02□□□□□ -1.13
SYNE1-234ENST00000536990 HIVEP2P31629 2446 aa8.02□□□□□ -1.13
SYNE1-234ENST00000536990 J3QKU1 62 aa8.02□□□□□ -1.13
SYNE1-234ENST00000536990 C3orf56Q8N813 242 aa8.02□□□□□ -1.13
SYNE1-234ENST00000536990 KIR2DL5BQ8NHK3 375 aa8.02□□□□□ -1.13
SYNE1-234ENST00000536990 FN1P02751 2386 aaKnown RBP8.01□□□□□ -1.13
SYNE1-234ENST00000536990 KRTAP10-3P60369 221 aa8.01□□□□□ -1.13
SYNE1-234ENST00000536990 C14orf132Q9NPU4 83 aa8.01□□□□□ -1.13
SYNE1-234ENST00000536990 PAX4O43316 350 aa8.01□□□□□ -1.13
SYNE1-234ENST00000536990 LY6G6DO95868 133 aa8.01□□□□□ -1.13
SYNE1-234ENST00000536990 SMIM20Q8N5G0 67 aa8.01□□□□□ -1.13
SYNE1-234ENST00000536990 SMR3AQ99954 134 aa8.01□□□□□ -1.13
SYNE1-234ENST00000536990 LECT2O14960 151 aa8□□□□□ -1.13
SYNE1-234ENST00000536990 C3orf22Q8N5N4 141 aa8□□□□□ -1.13
SYNE1-234ENST00000536990 LINC00482Q8N8I6 264 aa8□□□□□ -1.13
SYNE1-234ENST00000536990 TMEM126AQ9H061 195 aa8□□□□□ -1.13
SYNE1-234ENST00000536990 GYPEP15421 78 aa8□□□□□ -1.13
SYNE1-234ENST00000536990 HIST1H4AP62805 103 aaKnown RBP8□□□□□ -1.13
SYNE1-234ENST00000536990 CFAP161Q6P656 301 aa8□□□□□ -1.13
SYNE1-234ENST00000536990 KLK5Q9Y337 293 aaPredicted RBP8□□□□□ -1.13
SYNE1-234ENST00000536990 C6orf226Q5I0X4 101 aa7.99□□□□□ -1.13
SYNE1-234ENST00000536990 LINC00612Q8N6U2 182 aa7.99□□□□□ -1.13
SYNE1-234ENST00000536990 OR13C6PQ8NH95 151 aa7.99□□□□□ -1.13
SYNE1-234ENST00000536990 C11orf68Q9H3H3 251 aaKnown RBP7.99□□□□□ -1.13
SYNE1-234ENST00000536990 UQCRQO14949 82 aa7.98□□□□□ -1.13
SYNE1-234ENST00000536990 SLPIP03973 132 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 XCL1P47992 114 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 LINC00526Q96FQ7 95 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 X6R8D5 127 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 A0A1B0GUV1 79 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 NCR3O14931 201 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 SS18Q15532 418 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 Q8IZM0 81 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 LINC00846Q9NV44 126 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 C9orf153Q5TBE3 101 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 C2orf48Q96LS8 159 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 PRO0255Q9UI72 69 aa7.97□□□□□ -1.13
SYNE1-234ENST00000536990 HELZ2Q9BYK8 2649 aaKnown RBP7.97□□□□□ -1.13
SYNE1-234ENST00000536990 UNC79Q9P2D8 2635 aa7.96□□□□□ -1.13
SYNE1-234ENST00000536990 SMIM9A6NGZ8 99 aa7.96□□□□□ -1.13
SYNE1-234ENST00000536990 NANOS2P60321 138 aaKnown RBP7.96□□□□□ -1.14
SYNE1-234ENST00000536990 Q6JHZ5 121 aa7.96□□□□□ -1.14
SYNE1-234ENST00000536990 LINC00167Q96N53 147 aa7.95□□□□□ -1.14
SYNE1-234ENST00000536990 LINC01561Q8N1V8 128 aa7.95□□□□□ -1.14
SYNE1-234ENST00000536990 ORMDL1Q9P0S3 153 aa7.95□□□□□ -1.14
SYNE1-234ENST00000536990 FASNP49327 2511 aaKnown RBP7.95□□□□□ -1.14
SYNE1-234ENST00000536990 A0A096LPF7 62 aa7.95□□□□□ -1.14
SYNE1-234ENST00000536990 COX7CP15954 63 aa7.95□□□□□ -1.14
SYNE1-234ENST00000536990 CLPSL2Q6UWE3 100 aa7.95□□□□□ -1.14
SYNE1-234ENST00000536990 GCN1Q92616 2671 aaKnown RBP7.94□□□□□ -1.14
SYNE1-234ENST00000536990 C9orf66Q5T8R8 295 aa7.94□□□□□ -1.14
SYNE1-234ENST00000536990 IGKV3D-7A0A0C4DH55 119 aa7.93□□□□□ -1.14
SYNE1-234ENST00000536990 PRR3P79522 188 aaKnown RBP7.93□□□□□ -1.14
SYNE1-234ENST00000536990 KIAA0087Q14695 138 aa7.93□□□□□ -1.14
SYNE1-234ENST00000536990 NBEAL2Q6ZNJ1 2754 aa7.93□□□□□ -1.14
SYNE1-234ENST00000536990 LYRM9A8MSI8 78 aa7.93□□□□□ -1.14
SYNE1-234ENST00000536990 ATOX1O00244 68 aa7.93□□□□□ -1.14
SYNE1-234ENST00000536990 SPATA3Q8NHX4 192 aa7.92□□□□□ -1.14
SYNE1-234ENST00000536990 A0A1B0GX51 115 aa7.92□□□□□ -1.14
SYNE1-234ENST00000536990 RPL18AQ02543 176 aaKnown RBP7.92□□□□□ -1.14
SYNE1-234ENST00000536990 NDUFC2O95298 119 aa7.91□□□□□ -1.14
SYNE1-234ENST00000536990 CCKP06307 115 aa7.91□□□□□ -1.14
SYNE1-234ENST00000536990 DEFB135Q30KP9 77 aa7.91□□□□□ -1.14
SYNE1-234ENST00000536990 DEFB4AO15263 64 aa7.91□□□□□ -1.14
SYNE1-234ENST00000536990 Q8N814 137 aa7.91□□□□□ -1.14
SYNE1-234ENST00000536990 CRYGAP11844 174 aa7.9□□□□□ -1.14
SYNE1-234ENST00000536990 COX17Q14061 63 aa7.9□□□□□ -1.14
SYNE1-234ENST00000536990 CD164L2Q6UWJ8 174 aa7.9□□□□□ -1.14
SYNE1-234ENST00000536990 LINC00269Q8N2A0 174 aa7.9□□□□□ -1.14
SYNE1-234ENST00000536990 A0A087WVE0 104 aa7.89□□□□□ -1.15
SYNE1-234ENST00000536990 APOC4P55056 127 aa7.89□□□□□ -1.15
SYNE1-234ENST00000536990 IGHV4-28A0A0C4DH34 117 aa7.89□□□□□ -1.15
SYNE1-234ENST00000536990 Q8N3U1 123 aa7.89□□□□□ -1.15
SYNE1-234ENST00000536990 Q8NDZ9 215 aa7.89□□□□□ -1.15
SYNE1-234ENST00000536990 CHCHD10Q8WYQ3 142 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-234ENST00000536990 DAD1P61803 113 aa7.88□□□□□ -1.15
SYNE1-234ENST00000536990 VWFP04275 2813 aa7.88□□□□□ -1.15
SYNE1-234ENST00000536990 INAFM1C9JVW0 142 aa7.88□□□□□ -1.15
SYNE1-234ENST00000536990 JMJD7-PLA2G4BH0Y9G9 81 aa7.88□□□□□ -1.15
SYNE1-234ENST00000536990 C9orf116Q5BN46 136 aaPredicted RBP7.88□□□□□ -1.15
SYNE1-234ENST00000536990 NOTCH2Q04721 2471 aa7.87□□□□□ -1.15
SYNE1-234ENST00000536990 TMEM256-PLSCR3K7ERE1 68 aa7.87□□□□□ -1.15
SYNE1-234ENST00000536990 ANGP03950 147 aaKnown RBP7.87□□□□□ -1.15
SYNE1-234ENST00000536990 CYSTM1Q9H1C7 97 aa7.87□□□□□ -1.15
SYNE1-234ENST00000536990 IGLV10-54A0A075B6I4 117 aa7.86□□□□□ -1.15
SYNE1-234ENST00000536990 hADV29S1A0JD25 119 aa7.86□□□□□ -1.15
SYNE1-234ENST00000536990 KMT2BQ9UMN6 2715 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-234ENST00000536990 USP17L23D6RBM5 183 aa7.86□□□□□ -1.15
SYNE1-234ENST00000536990 REG3AQ06141 175 aa7.86□□□□□ -1.15
SYNE1-234ENST00000536990 SERP2Q8N6R1 65 aa7.86□□□□□ -1.15
SYNE1-234ENST00000536990 C6orf99Q4VX62 202 aa7.85□□□□□ -1.15
SYNE1-234ENST00000536990 UPK3BQ9BT76 320 aa7.85□□□□□ -1.15
SYNE1-234ENST00000536990 CELA1Q9UNI1 258 aa7.84□□□□□ -1.15
SYNE1-234ENST00000536990 LYPD5Q6UWN5 251 aa7.84□□□□□ -1.15
SYNE1-234ENST00000536990 HECTD1Q9ULT8 2610 aa7.84□□□□□ -1.15
SYNE1-234ENST00000536990 MIFP14174 115 aa7.84□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms