RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 RNASE13Q5GAN3 156 aaKnown RBP4.51□□□□□ -1.69
SYNE1-233ENST00000535896 MEIG1Q5JSS6 88 aa4.51□□□□□ -1.69
SYNE1-233ENST00000535896 HIST2H2BDQ6DRA6 164 aa4.51□□□□□ -1.69
SYNE1-233ENST00000535896 TMEM243Q9BU79 118 aa4.51□□□□□ -1.69
SYNE1-233ENST00000535896 H0YGX0 51 aa4.5□□□□□ -1.69
SYNE1-233ENST00000535896 UBE2L6O14933 153 aa4.5□□□□□ -1.69
SYNE1-233ENST00000535896 CRPP02741 224 aa4.5□□□□□ -1.69
SYNE1-233ENST00000535896 Q6ZSV7 163 aa4.5□□□□□ -1.69
SYNE1-233ENST00000535896 C1orf158Q8N1D5 194 aa4.5□□□□□ -1.69
SYNE1-233ENST00000535896 LINC01561Q8N1V8 128 aa4.5□□□□□ -1.69
SYNE1-233ENST00000535896 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.5□□□□□ -1.69
SYNE1-233ENST00000535896 KRTAP9-8Q9BYQ0 159 aa4.5□□□□□ -1.69
SYNE1-233ENST00000535896 TMEM126AQ9H061 195 aa4.5□□□□□ -1.69
SYNE1-233ENST00000535896 C16orf95Q9H693 158 aa4.5□□□□□ -1.69
SYNE1-233ENST00000535896 TRGV1A0A0A0MS02 117 aa4.49□□□□□ -1.69
SYNE1-233ENST00000535896 IGHV3-38A0A0C4DH36 116 aa4.49□□□□□ -1.69
SYNE1-233ENST00000535896 A0A1B0GX51 115 aa4.49□□□□□ -1.69
SYNE1-233ENST00000535896 A0A1W2PRX2 142 aa4.49□□□□□ -1.69
SYNE1-233ENST00000535896 A8MZ25 164 aa4.49□□□□□ -1.69
SYNE1-233ENST00000535896 IBA57-AS1B1ANH7 110 aa4.49□□□□□ -1.69
SYNE1-233ENST00000535896 COX6A2Q02221 97 aa4.49□□□□□ -1.69
SYNE1-233ENST00000535896 SORL1Q92673 2214 aa4.48□□□□□ -1.69
SYNE1-233ENST00000535896 LINC00694P0DN24 101 aa4.48□□□□□ -1.69
SYNE1-233ENST00000535896 NPC2P61916 151 aa4.48□□□□□ -1.69
SYNE1-233ENST00000535896 DEFB136Q30KP8 78 aa4.48□□□□□ -1.69
SYNE1-233ENST00000535896 SOSTDC1Q6X4U4 206 aa4.48□□□□□ -1.69
SYNE1-233ENST00000535896 NTM-AS1Q6ZSK4 140 aa4.48□□□□□ -1.69
SYNE1-233ENST00000535896 C11orf44Q8N8P7 122 aa4.48□□□□□ -1.69
SYNE1-233ENST00000535896 LINC01006Q8NI28 216 aa4.48□□□□□ -1.69
SYNE1-233ENST00000535896 COX7B2Q8TF08 81 aa4.48□□□□□ -1.69
SYNE1-233ENST00000535896 Q9UF83 564 aa4.48□□□□□ -1.69
SYNE1-233ENST00000535896 DNHD1Q96M86 4753 aa4.47□□□□□ -1.69
SYNE1-233ENST00000535896 A0A087WZ39 114 aa4.47□□□□□ -1.69
SYNE1-233ENST00000535896 TRAV13-1A0A0B4J241 112 aa4.47□□□□□ -1.69
SYNE1-233ENST00000535896 B5MCH6 92 aa4.47□□□□□ -1.69
SYNE1-233ENST00000535896 DNAL4O96015 105 aa4.47□□□□□ -1.69
SYNE1-233ENST00000535896 BAALC-AS2P0C853 105 aa4.47□□□□□ -1.69
SYNE1-233ENST00000535896 MUC7Q8TAX7 377 aa4.47□□□□□ -1.69
SYNE1-233ENST00000535896 XCL2Q9UBD3 114 aa4.47□□□□□ -1.69
SYNE1-233ENST00000535896 UQCRQO14949 82 aa4.46□□□□□ -1.7
SYNE1-233ENST00000535896 MALP21145 153 aa4.46□□□□□ -1.7
SYNE1-233ENST00000535896 KRTAP10-2P60368 255 aa4.46□□□□□ -1.7
SYNE1-233ENST00000535896 KHDC1LQ5JSQ8 128 aa4.46□□□□□ -1.7
SYNE1-233ENST00000535896 Q6ZTI0 123 aa4.46□□□□□ -1.7
SYNE1-233ENST00000535896 C18orf65Q6ZTR6 163 aa4.46□□□□□ -1.7
SYNE1-233ENST00000535896 C5orf38Q86SI9 138 aa4.46□□□□□ -1.7
SYNE1-233ENST00000535896 SPATA3Q8NHX4 192 aa4.46□□□□□ -1.7
SYNE1-233ENST00000535896 OBSCN-AS1Q96MR7 158 aa4.46□□□□□ -1.7
SYNE1-233ENST00000535896 SND1-IT1Q9HBX3 110 aa4.46□□□□□ -1.7
SYNE1-233ENST00000535896 TRBV6-8A0A0A6YYG3 113 aa4.45□□□□□ -1.7
SYNE1-233ENST00000535896 IGHV3OR16-9A0A0B4J2B5 98 aa4.45□□□□□ -1.7
SYNE1-233ENST00000535896 PLAC8L1A1L4L8 177 aa4.45□□□□□ -1.7
SYNE1-233ENST00000535896 CCDC179H3BU77 68 aa4.45□□□□□ -1.7
SYNE1-233ENST00000535896 CCL24O00175 119 aa4.45□□□□□ -1.7
SYNE1-233ENST00000535896 ATOX1O00244 68 aa4.45□□□□□ -1.7
SYNE1-233ENST00000535896 HIST1H4AP62805 103 aaKnown RBP4.45□□□□□ -1.7
SYNE1-233ENST00000535896 ATP5EP2Q5VTU8 51 aa4.45□□□□□ -1.7
SYNE1-233ENST00000535896 C3orf56Q8N813 242 aa4.45□□□□□ -1.7
SYNE1-233ENST00000535896 MGAM2Q2M2H8 2515 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 FAM236AA0A1B0GUQ0 79 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 A0A1B0GUV1 79 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 FAM236BA0A1B0GV22 79 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 COX17Q14061 63 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 S100A7L2Q5SY68 101 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 Q6JHZ5 121 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 Q8IZM0 81 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 MIR7-3HGQ8N6C7 128 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 LINC00337Q8N6G1 96 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 LINC00612Q8N6U2 182 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 KIR2DL5BQ8NHK3 375 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 SS18L2Q9UHA2 77 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 WNK1Q9H4A3 2382 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 TRRAPQ9Y4A5 3859 aa4.44□□□□□ -1.7
SYNE1-233ENST00000535896 IGKV2-28A0A075B6P5 120 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 TRGV2A0A075B6R0 118 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 TRGV4A0A0C4DH28 118 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 NDUFC2O95298 119 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 IGKV2D-28P01615 120 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 IGLV1-51P01701 117 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 PRM2P04554 102 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 C3orf22Q8N5N4 141 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 CSNK1G2-AS1Q8NCQ2 148 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 LINC00526Q96FQ7 95 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 LINC00167Q96N53 147 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 NOP10Q9NPE3 64 aaKnown RBP4.43□□□□□ -1.7
SYNE1-233ENST00000535896 C22orf24Q9Y442 160 aa4.43□□□□□ -1.7
SYNE1-233ENST00000535896 SMIM9A6NGZ8 99 aa4.42□□□□□ -1.7
SYNE1-233ENST00000535896 JMJD7-PLA2G4BH0Y9G9 81 aa4.42□□□□□ -1.7
SYNE1-233ENST00000535896 H3BQ85 93 aa4.42□□□□□ -1.7
SYNE1-233ENST00000535896 GIG44P09565 113 aaPredicted RBP4.42□□□□□ -1.7
SYNE1-233ENST00000535896 CCL18P55774 89 aa4.42□□□□□ -1.7
SYNE1-233ENST00000535896 SMIM11BQ8TCY0 68 aa4.42□□□□□ -1.7
SYNE1-233ENST00000535896 SMCR5Q8TEV8 140 aa4.42□□□□□ -1.7
SYNE1-233ENST00000535896 FAM218AQ96MZ4 157 aa4.42□□□□□ -1.7
SYNE1-233ENST00000535896 KLK5Q9Y337 293 aaPredicted RBP4.42□□□□□ -1.7
SYNE1-233ENST00000535896 VWFP04275 2813 aa4.42□□□□□ -1.7
SYNE1-233ENST00000535896 CRYGAP11844 174 aa4.41□□□□□ -1.7
SYNE1-233ENST00000535896 COX7CP15954 63 aa4.41□□□□□ -1.7
SYNE1-233ENST00000535896 LINC00158P58513 81 aa4.41□□□□□ -1.7
SYNE1-233ENST00000535896 FHL2Q14192 279 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms