RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 ALKBH7Q9BT30 221 aaPredicted RBP7.88□□□□□ -1.15
CPSF1-204ENST00000529288 LINC00173Q6ZV60 143 aa7.87□□□□□ -1.15
CPSF1-204ENST00000529288 SVBPQ8N300 66 aa7.87□□□□□ -1.15
CPSF1-204ENST00000529288 YPEL4Q96NS1 127 aa7.87□□□□□ -1.15
CPSF1-204ENST00000529288 NXT2Q9NPJ8 142 aaKnown RBP7.87□□□□□ -1.15
CPSF1-204ENST00000529288 LINC01546A6NGU7 62 aa7.86□□□□□ -1.15
CPSF1-204ENST00000529288 IGIPA6NJ69 53 aa7.86□□□□□ -1.15
CPSF1-204ENST00000529288 K7EMI3 77 aa7.86□□□□□ -1.15
CPSF1-204ENST00000529288 LINC01561Q8N1V8 128 aa7.86□□□□□ -1.15
CPSF1-204ENST00000529288 AMELXQ99217 191 aa7.86□□□□□ -1.15
CPSF1-204ENST00000529288 SNAPINO95295 136 aa7.85□□□□□ -1.15
CPSF1-204ENST00000529288 COX19Q49B96 90 aa7.85□□□□□ -1.15
CPSF1-204ENST00000529288 MRPL18Q9H0U6 180 aaKnown RBP7.85□□□□□ -1.15
CPSF1-204ENST00000529288 GEMIN7Q9H840 131 aaKnown RBP7.85□□□□□ -1.15
CPSF1-204ENST00000529288 XAGE1AQ9HD64 81 aa7.85□□□□□ -1.15
CPSF1-204ENST00000529288 IGLV1-50A0A075B6I6 118 aa7.83□□□□□ -1.16
CPSF1-204ENST00000529288 NDUFA5Q16718 116 aa7.83□□□□□ -1.16
CPSF1-204ENST00000529288 Q8IZM0 81 aa7.83□□□□□ -1.16
CPSF1-204ENST00000529288 TOMM6Q96B49 74 aa7.83□□□□□ -1.16
CPSF1-204ENST00000529288 CDKN2A-AS1Q9UH64 79 aa7.83□□□□□ -1.16
CPSF1-204ENST00000529288 C22orf24Q9Y442 160 aa7.83□□□□□ -1.16
CPSF1-204ENST00000529288 LPAP08519 4548 aa7.82□□□□□ -1.16
CPSF1-204ENST00000529288 NPSP0C0P6 89 aa7.82□□□□□ -1.16
CPSF1-204ENST00000529288 G0S2P27469 103 aa7.82□□□□□ -1.16
CPSF1-204ENST00000529288 HERVK_113P63121 156 aa7.82□□□□□ -1.16
CPSF1-204ENST00000529288 SEC11AP67812 179 aa7.82□□□□□ -1.16
CPSF1-204ENST00000529288 FABP9Q0Z7S8 132 aa7.82□□□□□ -1.16
CPSF1-204ENST00000529288 PAPPA-AS1Q5QFB9 102 aa7.82□□□□□ -1.16
CPSF1-204ENST00000529288 SLC7A5P1Q8MH63 180 aa7.82□□□□□ -1.16
CPSF1-204ENST00000529288 URB1-AS1Q96HZ7 61 aa7.82□□□□□ -1.16
CPSF1-204ENST00000529288 LBHQ53QV2 105 aaPredicted RBP7.81□□□□□ -1.16
CPSF1-204ENST00000529288 SCGB3A1Q96QR1 104 aa7.81□□□□□ -1.16
CPSF1-204ENST00000529288 F8VRH5 84 aa7.8□□□□□ -1.16
CPSF1-204ENST00000529288 KRTAP1-4P0C5Y4 121 aa7.8□□□□□ -1.16
CPSF1-204ENST00000529288 PRR4Q16378 134 aa7.8□□□□□ -1.16
CPSF1-204ENST00000529288 FAM19A3Q7Z5A8 133 aa7.8□□□□□ -1.16
CPSF1-204ENST00000529288 C18orf32Q8TCD1 76 aa7.8□□□□□ -1.16
CPSF1-204ENST00000529288 TIMM17AQ99595 171 aa7.8□□□□□ -1.16
CPSF1-204ENST00000529288 A0A096LNJ9 63 aa7.79□□□□□ -1.16
CPSF1-204ENST00000529288 ZNF861PO60384 105 aa7.79□□□□□ -1.16
CPSF1-204ENST00000529288 CBLN2Q8IUK8 224 aa7.79□□□□□ -1.16
CPSF1-204ENST00000529288 TRAPPC1Q9Y5R8 145 aa7.79□□□□□ -1.16
CPSF1-204ENST00000529288 NUPR1O60356 82 aa7.78□□□□□ -1.16
CPSF1-204ENST00000529288 RPL13AP40429 203 aaKnown RBP7.78□□□□□ -1.16
CPSF1-204ENST00000529288 RAB5BP61020 215 aa7.78□□□□□ -1.16
CPSF1-204ENST00000529288 ERASQ7Z444 233 aa7.78□□□□□ -1.16
CPSF1-204ENST00000529288 GAGE10A6NGK3 116 aa7.77□□□□□ -1.17
CPSF1-204ENST00000529288 RPL37AP8A6NKH3 93 aa7.77□□□□□ -1.17
CPSF1-204ENST00000529288 TSPAN13O95857 204 aa7.77□□□□□ -1.17
CPSF1-204ENST00000529288 MRPL55Q7Z7F7 128 aaKnown RBP7.77□□□□□ -1.17
CPSF1-204ENST00000529288 COX7B2Q8TF08 81 aa7.77□□□□□ -1.17
CPSF1-204ENST00000529288 SPINK8P0C7L1 97 aa7.76□□□□□ -1.17
CPSF1-204ENST00000529288 CXCL5P42830 114 aa7.76□□□□□ -1.17
CPSF1-204ENST00000529288 FA2HQ7L5A8 372 aa7.76□□□□□ -1.17
CPSF1-204ENST00000529288 SMIM1B2RUZ4 78 aa7.75□□□□□ -1.17
CPSF1-204ENST00000529288 PDZD11Q5EBL8 140 aa7.75□□□□□ -1.17
CPSF1-204ENST00000529288 TINCRA0A1B0GVN0 87 aa7.74□□□□□ -1.17
CPSF1-204ENST00000529288 BCE1O60756 84 aa7.74□□□□□ -1.17
CPSF1-204ENST00000529288 LINC00614P0C842 121 aa7.74□□□□□ -1.17
CPSF1-204ENST00000529288 RPL28P46779 137 aaKnown RBP7.74□□□□□ -1.17
CPSF1-204ENST00000529288 LINC00167Q96N53 147 aa7.74□□□□□ -1.17
CPSF1-204ENST00000529288 CST9LQ9H4G1 147 aa7.74□□□□□ -1.17
CPSF1-204ENST00000529288 SMCO4Q9NRQ5 59 aa7.74□□□□□ -1.17
CPSF1-204ENST00000529288 LINC01549A6NIU2 74 aa7.73□□□□□ -1.17
CPSF1-204ENST00000529288 NDUFA6P56556 154 aa7.73□□□□□ -1.17
CPSF1-204ENST00000529288 TP73-AS1Q9UF72 201 aa7.73□□□□□ -1.17
CPSF1-204ENST00000529288 IGLV5-45A0A087WSX0 123 aa7.72□□□□□ -1.17
CPSF1-204ENST00000529288 PMCHL1Q16048 86 aa7.72□□□□□ -1.17
CPSF1-204ENST00000529288 NKAPP1Q8N9T2 125 aa7.72□□□□□ -1.17
CPSF1-204ENST00000529288 UBE2AP49459 152 aa7.71□□□□□ -1.18
CPSF1-204ENST00000529288 PMVKQ15126 192 aa7.71□□□□□ -1.18
CPSF1-204ENST00000529288 TYMSOSQ8TAI1 123 aa7.71□□□□□ -1.18
CPSF1-204ENST00000529288 ANAPC11Q9NYG5 84 aa7.71□□□□□ -1.18
CPSF1-204ENST00000529288 A0A087X002 238 aa7.7□□□□□ -1.18
CPSF1-204ENST00000529288 H3BRM9 83 aa7.7□□□□□ -1.18
CPSF1-204ENST00000529288 SCO1O75880 301 aa7.7□□□□□ -1.18
CPSF1-204ENST00000529288 ATP5LO75964 103 aa7.7□□□□□ -1.18
CPSF1-204ENST00000529288 HBDP02042 147 aa7.7□□□□□ -1.18
CPSF1-204ENST00000529288 CRYGAP11844 174 aa7.7□□□□□ -1.18
CPSF1-204ENST00000529288 PFN2P35080 140 aa7.7□□□□□ -1.18
CPSF1-204ENST00000529288 COLCA2A8K830 154 aa7.69□□□□□ -1.18
CPSF1-204ENST00000529288 LINC00310P59036 64 aa7.69□□□□□ -1.18
CPSF1-204ENST00000529288 IGKV2-28A0A075B6P5 120 aa7.68□□□□□ -1.18
CPSF1-204ENST00000529288 IGKV2D-28P01615 120 aa7.68□□□□□ -1.18
CPSF1-204ENST00000529288 TRGC2P03986 189 aa7.68□□□□□ -1.18
CPSF1-204ENST00000529288 IGLC3P0DOY3 106 aa7.67□□□□□ -1.18
CPSF1-204ENST00000529288 CHCHD1Q96BP2 118 aaKnown RBP7.67□□□□□ -1.18
CPSF1-204ENST00000529288 ZNF625Q96I27 306 aaPredicted RBP7.66□□□□□ -1.18
CPSF1-204ENST00000529288 IGLV5-37A0A075B6J1 123 aa7.65□□□□□ -1.18
CPSF1-204ENST00000529288 ZNF22P17026 224 aaPredicted RBP7.64□□□□□ -1.19
CPSF1-204ENST00000529288 PRLHP81277 87 aa7.64□□□□□ -1.19
CPSF1-204ENST00000529288 FAM19A1Q7Z5A9 133 aa7.64□□□□□ -1.19
CPSF1-204ENST00000529288 IGLV5-39A0A0G2JS06 123 aa7.63□□□□□ -1.19
CPSF1-204ENST00000529288 C11orf86A6NJI1 115 aa7.63□□□□□ -1.19
CPSF1-204ENST00000529288 SND1-IT1Q9HBX3 110 aa7.63□□□□□ -1.19
CPSF1-204ENST00000529288 ERG28Q9UKR5 140 aa7.63□□□□□ -1.19
CPSF1-204ENST00000529288 TMEM238C9JI98 176 aa7.62□□□□□ -1.19
CPSF1-204ENST00000529288 SERF1AO75920 110 aa7.62□□□□□ -1.19
CPSF1-204ENST00000529288 RPL24P83731 157 aaKnown RBP7.62□□□□□ -1.19
CPSF1-204ENST00000529288 KRTAP13-2Q52LG2 175 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 162.3 ms