RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TACC2O95359 2948 aa8.43□□□□□ -1.06
SYNPO-204ENST00000519664 OXLD1Q5BKU9 147 aa8.43□□□□□ -1.06
SYNPO-204ENST00000519664 CHCHD7Q9BUK0 85 aa8.43□□□□□ -1.06
SYNPO-204ENST00000519664 IGLV4-60A0A075B6I1 120 aa8.42□□□□□ -1.06
SYNPO-204ENST00000519664 NDUFC2-KCTD14E9PQ53 114 aa8.42□□□□□ -1.06
SYNPO-204ENST00000519664 DIRC1Q969H9 104 aa8.42□□□□□ -1.06
SYNPO-204ENST00000519664 IGKV2-24A0A0C4DH68 120 aa8.42□□□□□ -1.06
SYNPO-204ENST00000519664 LINC00959A0A1B0GUT2 108 aa8.42□□□□□ -1.06
SYNPO-204ENST00000519664 IBA57-AS1B1ANH7 110 aa8.42□□□□□ -1.06
SYNPO-204ENST00000519664 KLK5Q9Y337 293 aaPredicted RBP8.42□□□□□ -1.06
SYNPO-204ENST00000519664 ATP5EP2Q5VTU8 51 aa8.42□□□□□ -1.06
SYNPO-204ENST00000519664 RMI2Q96E14 147 aa8.42□□□□□ -1.06
SYNPO-204ENST00000519664 HILS1P60008 231 aa8.42□□□□□ -1.06
SYNPO-204ENST00000519664 COL27A1Q8IZC6 1860 aaPredicted RBP8.42□□□□□ -1.06
SYNPO-204ENST00000519664 TRBV7-7A0A0K0K1E9 115 aa8.41□□□□□ -1.06
SYNPO-204ENST00000519664 C1orf195Q5TG92 126 aa8.41□□□□□ -1.06
SYNPO-204ENST00000519664 C11orf45Q8TAV5 145 aa8.41□□□□□ -1.06
SYNPO-204ENST00000519664 LYRM9A8MSI8 78 aa8.41□□□□□ -1.06
SYNPO-204ENST00000519664 PRR3P79522 188 aaKnown RBP8.41□□□□□ -1.06
SYNPO-204ENST00000519664 COL12A1Q99715 3063 aa8.41□□□□□ -1.06
SYNPO-204ENST00000519664 C9orf116Q5BN46 136 aaPredicted RBP8.41□□□□□ -1.06
SYNPO-204ENST00000519664 SMIM1B2RUZ4 78 aa8.4□□□□□ -1.06
SYNPO-204ENST00000519664 LINC00315P59091 139 aa8.4□□□□□ -1.06
SYNPO-204ENST00000519664 TMEM256-PLSCR3K7ERE1 68 aa8.4□□□□□ -1.06
SYNPO-204ENST00000519664 SCXQ7RTU7 201 aa8.4□□□□□ -1.07
SYNPO-204ENST00000519664 SPTBN5Q9NRC6 3674 aaKnown RBP8.4□□□□□ -1.07
SYNPO-204ENST00000519664 DEFB131BA0A096LNP1 70 aa8.39□□□□□ -1.07
SYNPO-204ENST00000519664 SMIM11BQ8TCY0 68 aa8.39□□□□□ -1.07
SYNPO-204ENST00000519664 RPS28P62857 69 aaKnown RBP8.39□□□□□ -1.07
SYNPO-204ENST00000519664 UPK3BQ9BT76 320 aa8.39□□□□□ -1.07
SYNPO-204ENST00000519664 NREPQ16612 68 aa8.39□□□□□ -1.07
SYNPO-204ENST00000519664 TEX15Q9BXT5 2789 aa8.38□□□□□ -1.07
SYNPO-204ENST00000519664 FLNCQ14315 2725 aa8.38□□□□□ -1.07
SYNPO-204ENST00000519664 CDK2AP2O75956 126 aa8.38□□□□□ -1.07
SYNPO-204ENST00000519664 SMIM26A0A096LP01 95 aa8.38□□□□□ -1.07
SYNPO-204ENST00000519664 FUSP35637 526 aaKnown RBP eCLIP8.37□□□□□ -1.07
SYNPO-204ENST00000519664 A0A096LNI7 61 aa8.37□□□□□ -1.07
SYNPO-204ENST00000519664 IGLV1-51P01701 117 aa8.37□□□□□ -1.07
SYNPO-204ENST00000519664 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.37□□□□□ -1.07
SYNPO-204ENST00000519664 AMELXQ99217 191 aa8.37□□□□□ -1.07
SYNPO-204ENST00000519664 COX7BP24311 80 aa8.36□□□□□ -1.07
SYNPO-204ENST00000519664 Q6JHZ5 121 aa8.36□□□□□ -1.07
SYNPO-204ENST00000519664 TIMM17BO60830 172 aa8.36□□□□□ -1.07
SYNPO-204ENST00000519664 BRI3O95415 125 aa8.36□□□□□ -1.07
SYNPO-204ENST00000519664 SBSPONQ8IVN8 264 aa8.36□□□□□ -1.07
SYNPO-204ENST00000519664 LOC400499M0QZD8 3231 aa8.36□□□□□ -1.07
SYNPO-204ENST00000519664 CD164L2Q6UWJ8 174 aa8.36□□□□□ -1.07
SYNPO-204ENST00000519664 MPLKIPQ8TAP9 179 aa8.36□□□□□ -1.07
SYNPO-204ENST00000519664 MIFP14174 115 aa8.35□□□□□ -1.07
SYNPO-204ENST00000519664 UNQ6190/PRO20217Q6UXQ8 127 aa8.35□□□□□ -1.07
SYNPO-204ENST00000519664 Q6ZQY7 126 aa8.35□□□□□ -1.07
SYNPO-204ENST00000519664 SERP1Q9Y6X1 66 aa8.35□□□□□ -1.07
SYNPO-204ENST00000519664 IGKV2-28A0A075B6P5 120 aa8.35□□□□□ -1.07
SYNPO-204ENST00000519664 IGKV2D-28P01615 120 aa8.35□□□□□ -1.07
SYNPO-204ENST00000519664 ATP5EP56381 51 aaPredicted RBP8.35□□□□□ -1.07
SYNPO-204ENST00000519664 KPRPQ5T749 579 aaPredicted RBP8.35□□□□□ -1.07
SYNPO-204ENST00000519664 ENHOQ6UWT2 76 aa8.35□□□□□ -1.07
SYNPO-204ENST00000519664 NDUFC1O43677 76 aa8.34□□□□□ -1.07
SYNPO-204ENST00000519664 HIGD2AQ9BW72 106 aa8.34□□□□□ -1.07
SYNPO-204ENST00000519664 RETNQ9HD89 108 aa8.34□□□□□ -1.07
SYNPO-204ENST00000519664 PRO0628Q9UI54 55 aa8.34□□□□□ -1.07
SYNPO-204ENST00000519664 IGHV4-30-4P0DP06 118 aa8.34□□□□□ -1.07
SYNPO-204ENST00000519664 CRYGAP11844 174 aa8.33□□□□□ -1.08
SYNPO-204ENST00000519664 FHL2Q14192 279 aa8.33□□□□□ -1.08
SYNPO-204ENST00000519664 MRPL55Q7Z7F7 128 aaKnown RBP8.33□□□□□ -1.08
SYNPO-204ENST00000519664 GCN1Q92616 2671 aaKnown RBP8.33□□□□□ -1.08
SYNPO-204ENST00000519664 LRBAP50851 2863 aa8.33□□□□□ -1.08
SYNPO-204ENST00000519664 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.32□□□□□ -1.08
SYNPO-204ENST00000519664 CYSRT1A8MQ03 144 aa8.32□□□□□ -1.08
SYNPO-204ENST00000519664 NHLRC4P0CG21 123 aaPredicted RBP8.32□□□□□ -1.08
SYNPO-204ENST00000519664 NBEAL2Q6ZNJ1 2754 aa8.32□□□□□ -1.08
SYNPO-204ENST00000519664 LINC01546A6NGU7 62 aa8.32□□□□□ -1.08
SYNPO-204ENST00000519664 ITPR1Q14643 2758 aa8.32□□□□□ -1.08
SYNPO-204ENST00000519664 BEAN1Q3B7T3 259 aa8.32□□□□□ -1.08
SYNPO-204ENST00000519664 WFDC9Q8NEX5 89 aa8.31□□□□□ -1.08
SYNPO-204ENST00000519664 PDE6GP18545 87 aa8.31□□□□□ -1.08
SYNPO-204ENST00000519664 C11orf72Q8NBR9 251 aa8.31□□□□□ -1.08
SYNPO-204ENST00000519664 UBR5O95071 2799 aaPredicted RBP8.31□□□□□ -1.08
SYNPO-204ENST00000519664 FAM19A4Q96LR4 140 aa8.3□□□□□ -1.08
SYNPO-204ENST00000519664 NOTCH1P46531 2555 aa8.3□□□□□ -1.08
SYNPO-204ENST00000519664 H3BQ85 93 aa8.3□□□□□ -1.08
SYNPO-204ENST00000519664 NANOS2P60321 138 aaKnown RBP8.3□□□□□ -1.08
SYNPO-204ENST00000519664 NTM-AS1Q6ZSK4 140 aa8.3□□□□□ -1.08
SYNPO-204ENST00000519664 A8MTW9 85 aa8.29□□□□□ -1.08
SYNPO-204ENST00000519664 SYCNQ0VAF6 134 aa8.29□□□□□ -1.08
SYNPO-204ENST00000519664 A0A087WZ39 114 aa8.29□□□□□ -1.08
SYNPO-204ENST00000519664 FHL3Q13643 280 aa8.29□□□□□ -1.08
SYNPO-204ENST00000519664 C3orf84H3BNL1 204 aa8.29□□□□□ -1.08
SYNPO-204ENST00000519664 LELP1Q5T871 98 aa8.29□□□□□ -1.08
SYNPO-204ENST00000519664 NBEAL1Q6ZS30 2694 aa8.28□□□□□ -1.08
SYNPO-204ENST00000519664 C6orf223Q8N319 242 aa8.28□□□□□ -1.08
SYNPO-204ENST00000519664 SETXQ7Z333 2677 aaKnown RBP8.28□□□□□ -1.08
SYNPO-204ENST00000519664 ASH1LQ9NR48 2969 aaKnown RBP8.28□□□□□ -1.08
SYNPO-204ENST00000519664 A0A087WVE0 104 aa8.28□□□□□ -1.08
SYNPO-204ENST00000519664 A0A087WYN8 130 aa8.28□□□□□ -1.08
SYNPO-204ENST00000519664 NDUFS5O43920 106 aa8.28□□□□□ -1.08
SYNPO-204ENST00000519664 RPL37AP8A6NKH3 93 aa8.28□□□□□ -1.08
SYNPO-204ENST00000519664 SNURFQ9Y675 71 aa8.27□□□□□ -1.08
SYNPO-204ENST00000519664 UBE2AP49459 152 aa8.27□□□□□ -1.09
SYNPO-204ENST00000519664 IGSF10Q6WRI0 2623 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms