RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 GAGE2DQ9UEU5 116 aa18.27■□□□□ 0.52
SYNPO-203ENST00000518872 FAM168BA1KXE4 195 aa18.26■□□□□ 0.51
SYNPO-203ENST00000518872 FABP9Q0Z7S8 132 aa18.26■□□□□ 0.51
SYNPO-203ENST00000518872 PLA2G2DQ9UNK4 145 aa18.26■□□□□ 0.51
SYNPO-203ENST00000518872 C6orf226Q5I0X4 101 aa18.25■□□□□ 0.51
SYNPO-203ENST00000518872 TOMM7Q9P0U1 55 aa18.25■□□□□ 0.51
SYNPO-203ENST00000518872 CKS1BP61024 79 aa18.24■□□□□ 0.51
SYNPO-203ENST00000518872 FA2HQ7L5A8 372 aa18.23■□□□□ 0.51
SYNPO-203ENST00000518872 IGLV5-45A0A087WSX0 123 aa18.22■□□□□ 0.51
SYNPO-203ENST00000518872 TINCRA0A1B0GVN0 87 aa18.22■□□□□ 0.51
SYNPO-203ENST00000518872 KRTAP7-1Q8IUC3 87 aa18.22■□□□□ 0.51
SYNPO-203ENST00000518872 SMCO4Q9NRQ5 59 aa18.21■□□□□ 0.51
SYNPO-203ENST00000518872 CXCL5P42830 114 aa18.2■□□□□ 0.5
SYNPO-203ENST00000518872 C1orf137Q5JT78 98 aa18.2■□□□□ 0.5
SYNPO-203ENST00000518872 C9orf129Q5T035 196 aaKnown RBP18.2■□□□□ 0.5
SYNPO-203ENST00000518872 FAM19A5Q7Z5A7 132 aaPredicted RBP18.2■□□□□ 0.5
SYNPO-203ENST00000518872 LINC00469Q8N7U9 141 aa18.19■□□□□ 0.5
SYNPO-203ENST00000518872 CST9LQ9H4G1 147 aa18.19■□□□□ 0.5
SYNPO-203ENST00000518872 SMIM1B2RUZ4 78 aa18.18■□□□□ 0.5
SYNPO-203ENST00000518872 F8VRH5 84 aa18.18■□□□□ 0.5
SYNPO-203ENST00000518872 KRTAP10-8P60410 259 aa18.18■□□□□ 0.5
SYNPO-203ENST00000518872 PMVKQ15126 192 aa18.18■□□□□ 0.5
SYNPO-203ENST00000518872 ODF1Q14990 250 aa18.17■□□□□ 0.5
SYNPO-203ENST00000518872 PDZD11Q5EBL8 140 aa18.17■□□□□ 0.5
SYNPO-203ENST00000518872 M0QXV9 152 aa18.16■□□□□ 0.5
SYNPO-203ENST00000518872 SNAPINO95295 136 aa18.15■□□□□ 0.5
SYNPO-203ENST00000518872 APOC3P02656 99 aa18.15■□□□□ 0.5
SYNPO-203ENST00000518872 KRTAP11-1Q8IUC1 163 aa18.15■□□□□ 0.5
SYNPO-203ENST00000518872 TRAPPC1Q9Y5R8 145 aa18.15■□□□□ 0.5
SYNPO-203ENST00000518872 IGLV7-43P04211 117 aa18.14■□□□□ 0.49
SYNPO-203ENST00000518872 SVBPQ8N300 66 aa18.14■□□□□ 0.49
SYNPO-203ENST00000518872 C18orf32Q8TCD1 76 aa18.14■□□□□ 0.49
SYNPO-203ENST00000518872 NDUFA5Q16718 116 aa18.13■□□□□ 0.49
SYNPO-203ENST00000518872 A0A096LNJ9 63 aa18.12■□□□□ 0.49
SYNPO-203ENST00000518872 URB1-AS1Q96HZ7 61 aa18.12■□□□□ 0.49
SYNPO-203ENST00000518872 LINC00614P0C842 121 aa18.1■□□□□ 0.49
SYNPO-203ENST00000518872 COX7B2Q8TF08 81 aa18.1■□□□□ 0.49
SYNPO-203ENST00000518872 DIRC1Q969H9 104 aa18.08■□□□□ 0.48
SYNPO-203ENST00000518872 UBE2BP63146 152 aa18.07■□□□□ 0.48
SYNPO-203ENST00000518872 HBDP02042 147 aa18.06■□□□□ 0.48
SYNPO-203ENST00000518872 IGLC3P0DOY3 106 aa18.06■□□□□ 0.48
SYNPO-203ENST00000518872 H3BRM9 83 aa18.05■□□□□ 0.48
SYNPO-203ENST00000518872 XAGE1AQ9HD64 81 aa18.05■□□□□ 0.48
SYNPO-203ENST00000518872 SPINK8P0C7L1 97 aa18.04■□□□□ 0.48
SYNPO-203ENST00000518872 RAB5BP61020 215 aa18.04■□□□□ 0.48
SYNPO-203ENST00000518872 TP73-AS1Q9UF72 201 aa18.03■□□□□ 0.48
SYNPO-203ENST00000518872 H0Y9J4 135 aa18.02■□□□□ 0.48
SYNPO-203ENST00000518872 YPEL4Q96NS1 127 aa18.02■□□□□ 0.48
SYNPO-203ENST00000518872 C22orf24Q9Y442 160 aa18.02■□□□□ 0.48
SYNPO-203ENST00000518872 IGLV5-39A0A0G2JS06 123 aa18■□□□□ 0.47
SYNPO-203ENST00000518872 LBHQ53QV2 105 aaPredicted RBP18■□□□□ 0.47
SYNPO-203ENST00000518872 ATP5LO75964 103 aa17.99■□□□□ 0.47
SYNPO-203ENST00000518872 ZNF22P17026 224 aaPredicted RBP17.97■□□□□ 0.47
SYNPO-203ENST00000518872 NUPR1O60356 82 aa17.96■□□□□ 0.47
SYNPO-203ENST00000518872 NDUFA6P56556 154 aa17.96■□□□□ 0.47
SYNPO-203ENST00000518872 PMCHL1Q16048 86 aa17.96■□□□□ 0.47
SYNPO-203ENST00000518872 MRPL55Q7Z7F7 128 aaKnown RBP17.94■□□□□ 0.46
SYNPO-203ENST00000518872 CHCHD1Q96BP2 118 aaKnown RBP17.91■□□□□ 0.46
SYNPO-203ENST00000518872 UBR4Q5T4S7 5183 aa17.9■□□□□ 0.46
SYNPO-203ENST00000518872 IGLV5-37A0A075B6J1 123 aa17.9■□□□□ 0.46
SYNPO-203ENST00000518872 ZNF861PO60384 105 aa17.9■□□□□ 0.46
SYNPO-203ENST00000518872 KRTAP1-4P0C5Y4 121 aa17.9■□□□□ 0.46
SYNPO-203ENST00000518872 BAGE3Q86Y29 109 aa17.9■□□□□ 0.46
SYNPO-203ENST00000518872 IGLV1-50A0A075B6I6 118 aa17.88■□□□□ 0.45
SYNPO-203ENST00000518872 C11orf86A6NJI1 115 aa17.88■□□□□ 0.45
SYNPO-203ENST00000518872 PRR26Q8N8Z3 221 aa17.87■□□□□ 0.45
SYNPO-203ENST00000518872 SFTA2Q6UW10 78 aa17.86■□□□□ 0.45
SYNPO-203ENST00000518872 LINC00167Q96N53 147 aa17.85■□□□□ 0.45
SYNPO-203ENST00000518872 LRP2P98164 4655 aa17.85■□□□□ 0.45
SYNPO-203ENST00000518872 COX17Q14061 63 aa17.84■□□□□ 0.45
SYNPO-203ENST00000518872 TRAV12-1A0A0B4J245 112 aa17.83■□□□□ 0.44
SYNPO-203ENST00000518872 CHTOPQ9Y3Y2 248 aaKnown RBP17.83■□□□□ 0.44
SYNPO-203ENST00000518872 BCE1O60756 84 aa17.82■□□□□ 0.44
SYNPO-203ENST00000518872 TMEM170BQ5T4T1 132 aa17.82■□□□□ 0.44
SYNPO-203ENST00000518872 CBLN2Q8IUK8 224 aa17.82■□□□□ 0.44
SYNPO-203ENST00000518872 ERG28Q9UKR5 140 aa17.82■□□□□ 0.44
SYNPO-203ENST00000518872 PFN2P35080 140 aa17.8■□□□□ 0.44
SYNPO-203ENST00000518872 IFI27L1Q96BM0 104 aa17.8■□□□□ 0.44
SYNPO-203ENST00000518872 NKAPP1Q8N9T2 125 aa17.79■□□□□ 0.44
SYNPO-203ENST00000518872 ZNF625Q96I27 306 aaPredicted RBP17.78■□□□□ 0.44
SYNPO-203ENST00000518872 RPL13AP40429 203 aaKnown RBP17.77■□□□□ 0.44
SYNPO-203ENST00000518872 RPL28P46779 137 aaKnown RBP17.77■□□□□ 0.44
SYNPO-203ENST00000518872 RPL37AP8A6NKH3 93 aa17.76■□□□□ 0.43
SYNPO-203ENST00000518872 SND1-IT1Q9HBX3 110 aa17.76■□□□□ 0.43
SYNPO-203ENST00000518872 TMEM223A0PJW6 202 aa17.74■□□□□ 0.43
SYNPO-203ENST00000518872 HSBP1O75506 76 aa17.74■□□□□ 0.43
SYNPO-203ENST00000518872 GAGE10A6NGK3 116 aa17.73■□□□□ 0.43
SYNPO-203ENST00000518872 VPREB1P12018 145 aa17.73■□□□□ 0.43
SYNPO-203ENST00000518872 TRGC2P03986 189 aa17.71■□□□□ 0.43
SYNPO-203ENST00000518872 RPL24P83731 157 aaKnown RBP17.7■□□□□ 0.42
SYNPO-203ENST00000518872 KRTAP13-1Q8IUC0 172 aa17.7■□□□□ 0.42
SYNPO-203ENST00000518872 FAM19A2Q8N3H0 131 aa17.69■□□□□ 0.42
SYNPO-203ENST00000518872 SCO1O75880 301 aa17.65■□□□□ 0.42
SYNPO-203ENST00000518872 LINC00310P59036 64 aa17.65■□□□□ 0.42
SYNPO-203ENST00000518872 IGKV2-28A0A075B6P5 120 aa17.64■□□□□ 0.41
SYNPO-203ENST00000518872 IGKV2D-28P01615 120 aa17.64■□□□□ 0.41
SYNPO-203ENST00000518872 SLC7A5P1Q8MH63 180 aa17.64■□□□□ 0.41
SYNPO-203ENST00000518872 SERF1AO75920 110 aa17.62■□□□□ 0.41
SYNPO-203ENST00000518872 Q8NDZ9 215 aa17.62■□□□□ 0.41
SYNPO-203ENST00000518872 LEPROTL1O95214 131 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms