RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 MT1HL1P0DM35 61 aa7.11□□□□□ -1.27
VCAN-212ENST00000515397 NDUFA6P56556 154 aa7.11□□□□□ -1.27
VCAN-212ENST00000515397 HERVK_113P63121 156 aa7.11□□□□□ -1.27
VCAN-212ENST00000515397 FAM19A3Q7Z5A8 133 aa7.11□□□□□ -1.27
VCAN-212ENST00000515397 KRTAP7-1Q8IUC3 87 aa7.11□□□□□ -1.27
VCAN-212ENST00000515397 LINC01561Q8N1V8 128 aa7.11□□□□□ -1.27
VCAN-212ENST00000515397 SVBPQ8N300 66 aa7.11□□□□□ -1.27
VCAN-212ENST00000515397 C18orf32Q8TCD1 76 aa7.11□□□□□ -1.27
VCAN-212ENST00000515397 PACRGQ96M98 296 aaPredicted RBP7.11□□□□□ -1.27
VCAN-212ENST00000515397 A0A096LNJ9 63 aa7.1□□□□□ -1.27
VCAN-212ENST00000515397 SPINK8P0C7L1 97 aa7.1□□□□□ -1.27
VCAN-212ENST00000515397 CKS1BP61024 79 aa7.1□□□□□ -1.27
VCAN-212ENST00000515397 ODF1Q14990 250 aa7.1□□□□□ -1.27
VCAN-212ENST00000515397 NDUFA5Q16718 116 aa7.1□□□□□ -1.27
VCAN-212ENST00000515397 PSORS1C2Q9UIG4 136 aa7.1□□□□□ -1.27
VCAN-212ENST00000515397 TRBV30A0A0K0K1B3 111 aa7.09□□□□□ -1.27
VCAN-212ENST00000515397 LINC00614P0C842 121 aa7.09□□□□□ -1.27
VCAN-212ENST00000515397 TLX1NBP0CAT3 122 aa7.09□□□□□ -1.27
VCAN-212ENST00000515397 C9orf129Q5T035 196 aaKnown RBP7.09□□□□□ -1.27
VCAN-212ENST00000515397 SLC7A5P1Q8MH63 180 aa7.09□□□□□ -1.27
VCAN-212ENST00000515397 TINCRA0A1B0GVN0 87 aa7.08□□□□□ -1.28
VCAN-212ENST00000515397 SMIM1B2RUZ4 78 aa7.08□□□□□ -1.28
VCAN-212ENST00000515397 NDUFC2-KCTD14E9PQ53 114 aa7.08□□□□□ -1.28
VCAN-212ENST00000515397 SEC11AP67812 179 aa7.08□□□□□ -1.28
VCAN-212ENST00000515397 SRSF9Q13242 221 aaKnown RBP eCLIP7.08□□□□□ -1.28
VCAN-212ENST00000515397 PMVKQ15126 192 aa7.08□□□□□ -1.28
VCAN-212ENST00000515397 CBLN2Q8IUK8 224 aa7.08□□□□□ -1.28
VCAN-212ENST00000515397 Q8IZM0 81 aa7.08□□□□□ -1.28
VCAN-212ENST00000515397 YPEL4Q96NS1 127 aa7.08□□□□□ -1.28
VCAN-212ENST00000515397 XAGE1AQ9HD64 81 aa7.08□□□□□ -1.28
VCAN-212ENST00000515397 C1orf137Q5JT78 98 aa7.07□□□□□ -1.28
VCAN-212ENST00000515397 RAB5BP61020 215 aa7.06□□□□□ -1.28
VCAN-212ENST00000515397 SERTAD4-AS1Q5TG53 156 aa7.06□□□□□ -1.28
VCAN-212ENST00000515397 COX7B2Q8TF08 81 aa7.06□□□□□ -1.28
VCAN-212ENST00000515397 IGLV5-45A0A087WSX0 123 aa7.05□□□□□ -1.28
VCAN-212ENST00000515397 M0QXV9 152 aa7.05□□□□□ -1.28
VCAN-212ENST00000515397 HBDP02042 147 aa7.05□□□□□ -1.28
VCAN-212ENST00000515397 SPINK6Q6UWN8 80 aa7.05□□□□□ -1.28
VCAN-212ENST00000515397 TNXBP22105 4242 aa7.04□□□□□ -1.28
VCAN-212ENST00000515397 F8VRH5 84 aa7.04□□□□□ -1.28
VCAN-212ENST00000515397 UBE2BP63146 152 aa7.04□□□□□ -1.28
VCAN-212ENST00000515397 PDZD11Q5EBL8 140 aa7.04□□□□□ -1.28
VCAN-212ENST00000515397 LINC01549A6NIU2 74 aa7.03□□□□□ -1.28
VCAN-212ENST00000515397 BAGE3Q86Y29 109 aa7.03□□□□□ -1.28
VCAN-212ENST00000515397 LINC01600Q96MT4 127 aa7.03□□□□□ -1.28
VCAN-212ENST00000515397 IGLC3P0DOY3 106 aa7.02□□□□□ -1.29
VCAN-212ENST00000515397 ZNF22P17026 224 aaPredicted RBP7.02□□□□□ -1.29
VCAN-212ENST00000515397 C22orf24Q9Y442 160 aa7.02□□□□□ -1.29
VCAN-212ENST00000515397 C11orf86A6NJI1 115 aa7.01□□□□□ -1.29
VCAN-212ENST00000515397 H3BRM9 83 aa7.01□□□□□ -1.29
VCAN-212ENST00000515397 TRGC2P03986 189 aa7.01□□□□□ -1.29
VCAN-212ENST00000515397 IGLV7-43P04211 117 aa7.01□□□□□ -1.29
VCAN-212ENST00000515397 REG3GQ6UW15 175 aa7.01□□□□□ -1.29
VCAN-212ENST00000515397 FAM19A2Q8N3H0 131 aa7.01□□□□□ -1.29
VCAN-212ENST00000515397 ATP5LO75964 103 aa7□□□□□ -1.29
VCAN-212ENST00000515397 CXCL5P42830 114 aa7□□□□□ -1.29
VCAN-212ENST00000515397 KRTAP10-8P60410 259 aa7□□□□□ -1.29
VCAN-212ENST00000515397 TMEM170BQ5T4T1 132 aa7□□□□□ -1.29
VCAN-212ENST00000515397 ZNF625Q96I27 306 aaPredicted RBP7□□□□□ -1.29
VCAN-212ENST00000515397 PLA2G2DQ9UNK4 145 aa7□□□□□ -1.29
VCAN-212ENST00000515397 HMCN2Q8NDA2 5059 aa7□□□□□ -1.29
VCAN-212ENST00000515397 GAGE10A6NGK3 116 aa6.99□□□□□ -1.29
VCAN-212ENST00000515397 PFN2P35080 140 aa6.99□□□□□ -1.29
VCAN-212ENST00000515397 CHTOPQ9Y3Y2 248 aaKnown RBP6.99□□□□□ -1.29
VCAN-212ENST00000515397 IGLV5-39A0A0G2JS06 123 aa6.98□□□□□ -1.29
VCAN-212ENST00000515397 RPL37AP8A6NKH3 93 aa6.98□□□□□ -1.29
VCAN-212ENST00000515397 SCO1O75880 301 aa6.98□□□□□ -1.29
VCAN-212ENST00000515397 IFI27L1Q96BM0 104 aa6.98□□□□□ -1.29
VCAN-212ENST00000515397 H0Y8G0 127 aa6.97□□□□□ -1.29
VCAN-212ENST00000515397 NUPR1O60356 82 aa6.97□□□□□ -1.29
VCAN-212ENST00000515397 CHCHD1Q96BP2 118 aaKnown RBP6.97□□□□□ -1.29
VCAN-212ENST00000515397 LINC00310P59036 64 aa6.96□□□□□ -1.3
VCAN-212ENST00000515397 PRR26Q8N8Z3 221 aa6.96□□□□□ -1.3
VCAN-212ENST00000515397 LINC00167Q96N53 147 aa6.96□□□□□ -1.3
VCAN-212ENST00000515397 A0A0U1RRA0 63 aa6.95□□□□□ -1.3
VCAN-212ENST00000515397 COLCA2A8K830 154 aa6.95□□□□□ -1.3
VCAN-212ENST00000515397 HSBP1O75506 76 aa6.95□□□□□ -1.3
VCAN-212ENST00000515397 SERF1AO75920 110 aa6.95□□□□□ -1.3
VCAN-212ENST00000515397 LBHQ53QV2 105 aaPredicted RBP6.95□□□□□ -1.3
VCAN-212ENST00000515397 MRPL55Q7Z7F7 128 aaKnown RBP6.95□□□□□ -1.3
VCAN-212ENST00000515397 DIRC1Q969H9 104 aa6.95□□□□□ -1.3
VCAN-212ENST00000515397 H0Y9J4 135 aa6.94□□□□□ -1.3
VCAN-212ENST00000515397 ERG28Q9UKR5 140 aa6.94□□□□□ -1.3
VCAN-212ENST00000515397 TRAV12-1A0A0B4J245 112 aa6.93□□□□□ -1.3
VCAN-212ENST00000515397 TMEM223A0PJW6 202 aa6.93□□□□□ -1.3
VCAN-212ENST00000515397 FABP4P15090 132 aa6.93□□□□□ -1.3
VCAN-212ENST00000515397 Q8NDZ9 215 aa6.93□□□□□ -1.3
VCAN-212ENST00000515397 SND1-IT1Q9HBX3 110 aa6.93□□□□□ -1.3
VCAN-212ENST00000515397 NKAPP1Q8N9T2 125 aa6.92□□□□□ -1.3
VCAN-212ENST00000515397 PMCHL2Q9BQD1 86 aa6.92□□□□□ -1.3
VCAN-212ENST00000515397 IGKV2-28A0A075B6P5 120 aa6.91□□□□□ -1.3
VCAN-212ENST00000515397 ZNF861PO60384 105 aa6.91□□□□□ -1.3
VCAN-212ENST00000515397 IGKV2D-28P01615 120 aa6.91□□□□□ -1.3
VCAN-212ENST00000515397 KRTAP1-4P0C5Y4 121 aa6.91□□□□□ -1.3
VCAN-212ENST00000515397 LINC00158P58513 81 aa6.91□□□□□ -1.3
VCAN-212ENST00000515397 TP73-AS1Q9UF72 201 aa6.91□□□□□ -1.3
VCAN-212ENST00000515397 UBR4Q5T4S7 5183 aa6.91□□□□□ -1.3
VCAN-212ENST00000515397 LEPROTL1O95214 131 aa6.9□□□□□ -1.3
VCAN-212ENST00000515397 IGLV5-37A0A075B6J1 123 aa6.89□□□□□ -1.31
VCAN-212ENST00000515397 BCE1O60756 84 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 152.1 ms