RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ORMDL2Q53FV1 153 aa7.04□□□□□ -1.28
COL6A3-213ENST00000493475 C6orf226Q5I0X4 101 aa7.04□□□□□ -1.28
COL6A3-213ENST00000493475 VCX2Q9H322 139 aa7.04□□□□□ -1.28
COL6A3-213ENST00000493475 A0A1B0GXF2 115 aa7.03□□□□□ -1.28
COL6A3-213ENST00000493475 FAM168BA1KXE4 195 aa7.03□□□□□ -1.28
COL6A3-213ENST00000493475 LINC00242Q5T6M2 205 aa7.03□□□□□ -1.28
COL6A3-213ENST00000493475 C10orf25Q5T742 122 aa7.03□□□□□ -1.28
COL6A3-213ENST00000493475 CARHSP1Q9Y2V2 147 aaKnown RBP7.03□□□□□ -1.28
COL6A3-213ENST00000493475 IGLV4-3A0A075B6K6 122 aa7.02□□□□□ -1.29
COL6A3-213ENST00000493475 NUPR1O60356 82 aa7.02□□□□□ -1.29
COL6A3-213ENST00000493475 IFITM2Q01629 132 aa7.02□□□□□ -1.29
COL6A3-213ENST00000493475 TOMM7Q9P0U1 55 aa7.02□□□□□ -1.29
COL6A3-213ENST00000493475 A0A0U1RQV1 116 aa7.01□□□□□ -1.29
COL6A3-213ENST00000493475 LOC389332A0A1B0GUA5 103 aa7.01□□□□□ -1.29
COL6A3-213ENST00000493475 HERVK_113P63121 156 aa7.01□□□□□ -1.29
COL6A3-213ENST00000493475 PNRC1Q12796 327 aaPredicted RBP7.01□□□□□ -1.29
COL6A3-213ENST00000493475 ALKBH7Q9BT30 221 aaPredicted RBP7.01□□□□□ -1.29
COL6A3-213ENST00000493475 PRSS47A8MTI9 375 aa7□□□□□ -1.29
COL6A3-213ENST00000493475 MT-ND4LP03901 98 aa7□□□□□ -1.29
COL6A3-213ENST00000493475 CXCL5P42830 114 aa7□□□□□ -1.29
COL6A3-213ENST00000493475 KIAA0087Q14695 138 aa7□□□□□ -1.29
COL6A3-213ENST00000493475 PRR4Q16378 134 aa7□□□□□ -1.29
COL6A3-213ENST00000493475 C2orf66Q6UXQ4 117 aa7□□□□□ -1.29
COL6A3-213ENST00000493475 Q8IZM0 81 aa7□□□□□ -1.29
COL6A3-213ENST00000493475 Q8N8P6 123 aa7□□□□□ -1.29
COL6A3-213ENST00000493475 GEMIN7Q9H840 131 aaKnown RBP7□□□□□ -1.29
COL6A3-213ENST00000493475 NXT2Q9NPJ8 142 aaKnown RBP7□□□□□ -1.29
COL6A3-213ENST00000493475 ZNF861PO60384 105 aa6.99□□□□□ -1.29
COL6A3-213ENST00000493475 RPL28P46779 137 aaKnown RBP6.99□□□□□ -1.29
COL6A3-213ENST00000493475 C2orf82Q6UX34 121 aa6.99□□□□□ -1.29
COL6A3-213ENST00000493475 FAM104AQ969W3 186 aa6.99□□□□□ -1.29
COL6A3-213ENST00000493475 ANAPC16Q96DE5 110 aa6.99□□□□□ -1.29
COL6A3-213ENST00000493475 LINC01549A6NIU2 74 aa6.98□□□□□ -1.29
COL6A3-213ENST00000493475 C9JQL5 133 aa6.98□□□□□ -1.29
COL6A3-213ENST00000493475 F8VRH5 84 aa6.98□□□□□ -1.29
COL6A3-213ENST00000493475 RAB14P61106 215 aa6.98□□□□□ -1.29
COL6A3-213ENST00000493475 SRSF3P84103 164 aaKnown RBP6.97□□□□□ -1.29
COL6A3-213ENST00000493475 C9orf129Q5T035 196 aaKnown RBP6.97□□□□□ -1.29
COL6A3-213ENST00000493475 KRTAP5-3Q6L8H2 238 aa6.97□□□□□ -1.29
COL6A3-213ENST00000493475 CTDSP1Q9GZU7 261 aa6.97□□□□□ -1.29
COL6A3-213ENST00000493475 TP73-AS1Q9UF72 201 aa6.97□□□□□ -1.29
COL6A3-213ENST00000493475 AMELXQ99217 191 aa6.96□□□□□ -1.3
COL6A3-213ENST00000493475 C22orf24Q9Y442 160 aa6.96□□□□□ -1.3
COL6A3-213ENST00000493475 KRTAP1-4P0C5Y4 121 aa6.95□□□□□ -1.3
COL6A3-213ENST00000493475 CLLU1Q5K131 121 aa6.95□□□□□ -1.3
COL6A3-213ENST00000493475 FAM19A3Q7Z5A8 133 aa6.95□□□□□ -1.3
COL6A3-213ENST00000493475 MRPL55Q7Z7F7 128 aaKnown RBP6.95□□□□□ -1.3
COL6A3-213ENST00000493475 TIMM17AQ99595 171 aa6.95□□□□□ -1.3
COL6A3-213ENST00000493475 CRYGAP11844 174 aa6.94□□□□□ -1.3
COL6A3-213ENST00000493475 KRTAP11-1Q8IUC1 163 aa6.94□□□□□ -1.3
COL6A3-213ENST00000493475 LINC00469Q8N7U9 141 aa6.94□□□□□ -1.3
COL6A3-213ENST00000493475 XAGE1AQ9HD64 81 aa6.94□□□□□ -1.3
COL6A3-213ENST00000493475 IGIPA6NJ69 53 aa6.93□□□□□ -1.3
COL6A3-213ENST00000493475 BCE1O60756 84 aa6.93□□□□□ -1.3
COL6A3-213ENST00000493475 NKAPP1Q8N9T2 125 aa6.93□□□□□ -1.3
COL6A3-213ENST00000493475 LINC00173Q6ZV60 143 aa6.92□□□□□ -1.3
COL6A3-213ENST00000493475 ERASQ7Z444 233 aa6.92□□□□□ -1.3
COL6A3-213ENST00000493475 KRTAP7-1Q8IUC3 87 aa6.92□□□□□ -1.3
COL6A3-213ENST00000493475 TYMSOSQ8TAI1 123 aa6.92□□□□□ -1.3
COL6A3-213ENST00000493475 SCGB3A1Q96QR1 104 aa6.92□□□□□ -1.3
COL6A3-213ENST00000493475 CDKN2A-AS1Q9UH64 79 aa6.92□□□□□ -1.3
COL6A3-213ENST00000493475 H3BRM9 83 aa6.91□□□□□ -1.3
COL6A3-213ENST00000493475 UBE2AP49459 152 aa6.91□□□□□ -1.3
COL6A3-213ENST00000493475 PDZD11Q5EBL8 140 aa6.91□□□□□ -1.3
COL6A3-213ENST00000493475 TOMM6Q96B49 74 aa6.91□□□□□ -1.3
COL6A3-213ENST00000493475 TINCRA0A1B0GVN0 87 aa6.9□□□□□ -1.3
COL6A3-213ENST00000493475 ATP5LO75964 103 aa6.9□□□□□ -1.3
COL6A3-213ENST00000493475 COX7B2Q8TF08 81 aa6.9□□□□□ -1.3
COL6A3-213ENST00000493475 TSPAN13O95857 204 aa6.89□□□□□ -1.31
COL6A3-213ENST00000493475 S100PP25815 95 aa6.89□□□□□ -1.31
COL6A3-213ENST00000493475 ZC2HC1BQ5TFG8 222 aa6.89□□□□□ -1.31
COL6A3-213ENST00000493475 TRAV9-1A0A075B6T8 112 aa6.88□□□□□ -1.31
COL6A3-213ENST00000493475 SMCO4Q9NRQ5 59 aa6.88□□□□□ -1.31
COL6A3-213ENST00000493475 SMIM1B2RUZ4 78 aa6.87□□□□□ -1.31
COL6A3-213ENST00000493475 IGKV2D-26A0A0A0MRZ7 120 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 GAGE10A6NGK3 116 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 RPL37AP8A6NKH3 93 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 RAB5BP61020 215 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 PMVKQ15126 192 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 COX19Q49B96 90 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 SFTA2Q6UW10 78 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 UQCC3Q6UW78 93 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 FA2HQ7L5A8 372 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 COMMD7Q86VX2 200 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 LINC00167Q96N53 147 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 LPAP08519 4548 aa6.86□□□□□ -1.31
COL6A3-213ENST00000493475 CTAG1AP78358 180 aa6.85□□□□□ -1.31
COL6A3-213ENST00000493475 RPL24P83731 157 aaKnown RBP6.85□□□□□ -1.31
COL6A3-213ENST00000493475 FAM229BQ4G0N7 80 aa6.85□□□□□ -1.31
COL6A3-213ENST00000493475 IGLV5-37A0A075B6J1 123 aa6.84□□□□□ -1.31
COL6A3-213ENST00000493475 IGLV5-45A0A087WSX0 123 aa6.84□□□□□ -1.31
COL6A3-213ENST00000493475 GNB1LQ9BYB4 327 aa6.84□□□□□ -1.31
COL6A3-213ENST00000493475 CST9LQ9H4G1 147 aa6.84□□□□□ -1.31
COL6A3-213ENST00000493475 A0A087X002 238 aa6.83□□□□□ -1.32
COL6A3-213ENST00000493475 SPINK8P0C7L1 97 aa6.83□□□□□ -1.32
COL6A3-213ENST00000493475 KIAA1644Q3SXP7 199 aa6.83□□□□□ -1.32
COL6A3-213ENST00000493475 LINC00304Q8N9R0 145 aa6.83□□□□□ -1.32
COL6A3-213ENST00000493475 TMEM218A2RU14 115 aa6.82□□□□□ -1.32
COL6A3-213ENST00000493475 COX17Q14061 63 aa6.82□□□□□ -1.32
COL6A3-213ENST00000493475 IGKV2-28A0A075B6P5 120 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms