RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 C16orf95Q9H693 158 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 SPG11Q96JI7 2443 aa4.11□□□□□ -1.75
VPS41-214ENST00000490924 TRGV1A0A0A0MS02 117 aa4.1□□□□□ -1.75
VPS41-214ENST00000490924 IGHV3-73A0A0B4J1V6 119 aa4.1□□□□□ -1.75
VPS41-214ENST00000490924 IGHV3OR16-9A0A0B4J2B5 98 aa4.1□□□□□ -1.75
VPS41-214ENST00000490924 UBE2L6O14933 153 aa4.1□□□□□ -1.75
VPS41-214ENST00000490924 HIST1H4AP62805 103 aaKnown RBP4.1□□□□□ -1.75
VPS41-214ENST00000490924 COX6A2Q02221 97 aa4.1□□□□□ -1.75
VPS41-214ENST00000490924 COX17Q14061 63 aa4.1□□□□□ -1.75
VPS41-214ENST00000490924 ATP5EP2Q5VTU8 51 aa4.1□□□□□ -1.75
VPS41-214ENST00000490924 LINC00612Q8N6U2 182 aa4.1□□□□□ -1.75
VPS41-214ENST00000490924 KIR2DL5BQ8NHK3 375 aa4.1□□□□□ -1.75
VPS41-214ENST00000490924 COX7B2Q8TF08 81 aa4.1□□□□□ -1.75
VPS41-214ENST00000490924 NACAE9PAV3 2078 aa4.09□□□□□ -1.75
VPS41-214ENST00000490924 TRBV6-8A0A0A6YYG3 113 aa4.09□□□□□ -1.75
VPS41-214ENST00000490924 PLAC8L1A1L4L8 177 aa4.09□□□□□ -1.75
VPS41-214ENST00000490924 UQCRQO14949 82 aa4.09□□□□□ -1.75
VPS41-214ENST00000490924 NDUFC2O95298 119 aa4.09□□□□□ -1.75
VPS41-214ENST00000490924 BAALC-AS2P0C853 105 aa4.09□□□□□ -1.75
VPS41-214ENST00000490924 HTN1P15515 57 aa4.09□□□□□ -1.75
VPS41-214ENST00000490924 MALP21145 153 aa4.09□□□□□ -1.75
VPS41-214ENST00000490924 S100A7L2Q5SY68 101 aa4.09□□□□□ -1.75
VPS41-214ENST00000490924 SOSTDC1Q6X4U4 206 aa4.09□□□□□ -1.75
VPS41-214ENST00000490924 LINC00167Q96N53 147 aa4.09□□□□□ -1.75
VPS41-214ENST00000490924 TRAV13-1A0A0B4J241 112 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 SMIM9A6NGZ8 99 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 CCL24O00175 119 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 ATOX1O00244 68 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 DNAL4O96015 105 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 IGLV1-51P01701 117 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 RNASE13Q5GAN3 156 aaKnown RBP4.08□□□□□ -1.76
VPS41-214ENST00000490924 Q6ZSV7 163 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 Q8IZM0 81 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 CSNK1G2-AS1Q8NCQ2 148 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 LINC00526Q96FQ7 95 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 SND1-IT1Q9HBX3 110 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 FAM30AQ9NZY2 134 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 XCL2Q9UBD3 114 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 Q9UF83 564 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 HIVEP1P15822 2718 aa4.08□□□□□ -1.76
VPS41-214ENST00000490924 IGKV2-28A0A075B6P5 120 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 IGHV4-28A0A0C4DH34 117 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 IGHV3-38A0A0C4DH36 116 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 TRBV10-3A0A0K0K1G6 114 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 A8MZ25 164 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 JMJD7-PLA2G4BH0Y9G9 81 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 BCE1O60756 84 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 IGKV2D-28P01615 120 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 GIG44P09565 113 aaPredicted RBP4.07□□□□□ -1.76
VPS41-214ENST00000490924 DEFB136Q30KP8 78 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 Q6JHZ5 121 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 Q6ZTI0 123 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 DEFB104AQ8WTQ1 72 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 C22orf24Q9Y442 160 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 SVEP1Q4LDE5 3571 aa4.07□□□□□ -1.76
VPS41-214ENST00000490924 TRGV2A0A075B6R0 118 aa4.06□□□□□ -1.76
VPS41-214ENST00000490924 NDUFA7O95182 113 aa4.06□□□□□ -1.76
VPS41-214ENST00000490924 CRYGAP11844 174 aa4.06□□□□□ -1.76
VPS41-214ENST00000490924 RPS28P62857 69 aaKnown RBP4.06□□□□□ -1.76
VPS41-214ENST00000490924 C18orf65Q6ZTR6 163 aa4.06□□□□□ -1.76
VPS41-214ENST00000490924 C3orf22Q8N5N4 141 aa4.06□□□□□ -1.76
VPS41-214ENST00000490924 MIR7-3HGQ8N6C7 128 aa4.06□□□□□ -1.76
VPS41-214ENST00000490924 LINC00337Q8N6G1 96 aa4.06□□□□□ -1.76
VPS41-214ENST00000490924 KLK5Q9Y337 293 aaPredicted RBP4.06□□□□□ -1.76
VPS41-214ENST00000490924 MTORP42345 2549 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 LOC100131303A0A0U1RQF7 123 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 FAM236AA0A1B0GUQ0 79 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 FAM236BA0A1B0GV22 79 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 CCDC179H3BU77 68 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 COX7CP15954 63 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 PDE6GP18545 87 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 CCL18P55774 89 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 SMIM11BQ8TCY0 68 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 FAM218AQ96MZ4 157 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 NOP10Q9NPE3 64 aaKnown RBP4.05□□□□□ -1.76
VPS41-214ENST00000490924 NIPBLQ6KC79 2804 aaeCLIP4.05□□□□□ -1.76
VPS41-214ENST00000490924 F8P00451 2351 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 SORL1Q92673 2214 aa4.05□□□□□ -1.76
VPS41-214ENST00000490924 TRGV4A0A0C4DH28 118 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 LINC00959A0A1B0GUT2 108 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 LYRM9A8MSI8 78 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 TMEM256-PLSCR3K7ERE1 68 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 NPC2P61916 151 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 RPL18AQ02543 176 aaKnown RBP4.04□□□□□ -1.76
VPS41-214ENST00000490924 SS18Q15532 418 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 KHDC1LQ5JSQ8 128 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 LCE1AQ5T7P2 110 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 LYPD5Q6UWN5 251 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 SPATA3Q8NHX4 192 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 ORMDL1Q9P0S3 153 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 APCP25054 2843 aa4.04□□□□□ -1.76
VPS41-214ENST00000490924 MXRA5Q9NR99 2828 aa4.03□□□□□ -1.76
VPS41-214ENST00000490924 LINC00158P58513 81 aa4.03□□□□□ -1.76
VPS41-214ENST00000490924 CD164L2Q6UWJ8 174 aa4.03□□□□□ -1.76
VPS41-214ENST00000490924 SMCR5Q8TEV8 140 aa4.03□□□□□ -1.76
VPS41-214ENST00000490924 CHCHD5Q9BSY4 110 aa4.03□□□□□ -1.76
VPS41-214ENST00000490924 SS18L2Q9UHA2 77 aa4.03□□□□□ -1.76
VPS41-214ENST00000490924 PRO0255Q9UI72 69 aa4.03□□□□□ -1.76
VPS41-214ENST00000490924 GVQW2A0A096LPI5 108 aaPredicted RBP4.02□□□□□ -1.77
VPS41-214ENST00000490924 NDUFC2-KCTD14E9PQ53 114 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms