RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 ACACBO00763 2458 aa8.44□□□□□ -1.06
COL3A1-206ENST00000487010 A0A1B0GX51 115 aa8.44□□□□□ -1.06
COL3A1-206ENST00000487010 GYPEP15421 78 aa8.44□□□□□ -1.06
COL3A1-206ENST00000487010 NANOS2P60321 138 aaKnown RBP8.44□□□□□ -1.06
COL3A1-206ENST00000487010 KIR2DL5BQ8NHK3 375 aa8.44□□□□□ -1.06
COL3A1-206ENST00000487010 LINC01006Q8NI28 216 aa8.44□□□□□ -1.06
COL3A1-206ENST00000487010 FAM208BQ5VWN6 2430 aa8.44□□□□□ -1.06
COL3A1-206ENST00000487010 CENPEQ02224 2701 aa8.43□□□□□ -1.06
COL3A1-206ENST00000487010 A0A087WVE0 104 aa8.42□□□□□ -1.06
COL3A1-206ENST00000487010 hADV29S1A0JD25 119 aa8.42□□□□□ -1.06
COL3A1-206ENST00000487010 ZNF843Q8N446 348 aa8.42□□□□□ -1.06
COL3A1-206ENST00000487010 LINC00612Q8N6U2 182 aa8.42□□□□□ -1.06
COL3A1-206ENST00000487010 Q8N814 137 aa8.42□□□□□ -1.06
COL3A1-206ENST00000487010 WFDC11Q8NEX6 87 aa8.42□□□□□ -1.06
COL3A1-206ENST00000487010 ZNF469Q96JG9 3925 aaPredicted RBP8.42□□□□□ -1.06
COL3A1-206ENST00000487010 JMJD7-PLA2G4BH0Y9G9 81 aa8.42□□□□□ -1.06
COL3A1-206ENST00000487010 PRR3P79522 188 aaKnown RBP8.42□□□□□ -1.06
COL3A1-206ENST00000487010 CLPSL2Q6UWE3 100 aa8.42□□□□□ -1.06
COL3A1-206ENST00000487010 C16orf95Q9H693 158 aa8.42□□□□□ -1.06
COL3A1-206ENST00000487010 NDUFC2O95298 119 aa8.41□□□□□ -1.06
COL3A1-206ENST00000487010 SERP2Q8N6R1 65 aa8.41□□□□□ -1.06
COL3A1-206ENST00000487010 NAV2Q8IVL1 2488 aa8.41□□□□□ -1.06
COL3A1-206ENST00000487010 PTPN13Q12923 2485 aa8.41□□□□□ -1.06
COL3A1-206ENST00000487010 USP17L23D6RBM5 183 aa8.4□□□□□ -1.06
COL3A1-206ENST00000487010 TMEM256-PLSCR3K7ERE1 68 aa8.4□□□□□ -1.06
COL3A1-206ENST00000487010 KIAA0087Q14695 138 aa8.4□□□□□ -1.06
COL3A1-206ENST00000487010 CYSTM1Q9H1C7 97 aa8.4□□□□□ -1.06
COL3A1-206ENST00000487010 UBR5O95071 2799 aaPredicted RBP8.4□□□□□ -1.06
COL3A1-206ENST00000487010 ZNF462Q96JM2 2506 aa8.4□□□□□ -1.07
COL3A1-206ENST00000487010 LOC107984640A0A0U1RRK4 108 aa8.39□□□□□ -1.07
COL3A1-206ENST00000487010 COX17Q14061 63 aa8.39□□□□□ -1.07
COL3A1-206ENST00000487010 S100A7L2Q5SY68 101 aa8.39□□□□□ -1.07
COL3A1-206ENST00000487010 ABCA12Q86UK0 2595 aa8.39□□□□□ -1.07
COL3A1-206ENST00000487010 UPK3BQ9BT76 320 aa8.39□□□□□ -1.07
COL3A1-206ENST00000487010 EPG5Q9HCE0 2579 aa8.38□□□□□ -1.07
COL3A1-206ENST00000487010 J3KT08 172 aa8.38□□□□□ -1.07
COL3A1-206ENST00000487010 CD164L2Q6UWJ8 174 aa8.38□□□□□ -1.07
COL3A1-206ENST00000487010 PRO0255Q9UI72 69 aa8.38□□□□□ -1.07
COL3A1-206ENST00000487010 SETXQ7Z333 2677 aaKnown RBP8.38□□□□□ -1.07
COL3A1-206ENST00000487010 NBPF19A0A087WUL8 3843 aa8.38□□□□□ -1.07
COL3A1-206ENST00000487010 A0A096LPF7 62 aa8.38□□□□□ -1.07
COL3A1-206ENST00000487010 RNASE1P07998 156 aaKnown RBP8.38□□□□□ -1.07
COL3A1-206ENST00000487010 CFAP161Q6P656 301 aa8.38□□□□□ -1.07
COL3A1-206ENST00000487010 LRRK2Q5S007 2527 aa8.37□□□□□ -1.07
COL3A1-206ENST00000487010 TLN2Q9Y4G6 2542 aa8.37□□□□□ -1.07
COL3A1-206ENST00000487010 IGHV4-28A0A0C4DH34 117 aa8.37□□□□□ -1.07
COL3A1-206ENST00000487010 ATP5EP2Q5VTU8 51 aa8.37□□□□□ -1.07
COL3A1-206ENST00000487010 LINC00269Q8N2A0 174 aa8.37□□□□□ -1.07
COL3A1-206ENST00000487010 CUBNO60494 3623 aa8.36□□□□□ -1.07
COL3A1-206ENST00000487010 RPS28P62857 69 aaKnown RBP8.36□□□□□ -1.07
COL3A1-206ENST00000487010 JMJD1CQ15652 2540 aa8.36□□□□□ -1.07
COL3A1-206ENST00000487010 LYPD5Q6UWN5 251 aa8.36□□□□□ -1.07
COL3A1-206ENST00000487010 CHCHD10Q8WYQ3 142 aaPredicted RBP8.36□□□□□ -1.07
COL3A1-206ENST00000487010 X6R8D5 127 aa8.36□□□□□ -1.07
COL3A1-206ENST00000487010 C6orf99Q4VX62 202 aa8.35□□□□□ -1.07
COL3A1-206ENST00000487010 C9orf116Q5BN46 136 aaPredicted RBP8.35□□□□□ -1.07
COL3A1-206ENST00000487010 SONP18583 2426 aaKnown RBP8.34□□□□□ -1.07
COL3A1-206ENST00000487010 HILS1P60008 231 aa8.34□□□□□ -1.07
COL3A1-206ENST00000487010 TMEM258P61165 79 aa8.34□□□□□ -1.07
COL3A1-206ENST00000487010 Q8NDZ9 215 aa8.34□□□□□ -1.07
COL3A1-206ENST00000487010 ITPR3Q14573 2671 aa8.34□□□□□ -1.07
COL3A1-206ENST00000487010 IGLV10-54A0A075B6I4 117 aa8.33□□□□□ -1.08
COL3A1-206ENST00000487010 SMIM9A6NGZ8 99 aa8.33□□□□□ -1.08
COL3A1-206ENST00000487010 KRTAP1-1Q07627 177 aa8.33□□□□□ -1.08
COL3A1-206ENST00000487010 LINC00575Q6W349 94 aa8.33□□□□□ -1.08
COL3A1-206ENST00000487010 WFDC9Q8NEX5 89 aa8.33□□□□□ -1.08
COL3A1-206ENST00000487010 NF1P21359 2839 aa8.33□□□□□ -1.08
COL3A1-206ENST00000487010 APCP25054 2843 aa8.33□□□□□ -1.08
COL3A1-206ENST00000487010 ANGP03950 147 aaKnown RBP8.33□□□□□ -1.08
COL3A1-206ENST00000487010 REG3AQ06141 175 aa8.33□□□□□ -1.08
COL3A1-206ENST00000487010 FAM19A5Q7Z5A7 132 aaPredicted RBP8.33□□□□□ -1.08
COL3A1-206ENST00000487010 ENHOQ6UWT2 76 aa8.32□□□□□ -1.08
COL3A1-206ENST00000487010 FAM19A1Q7Z5A9 133 aa8.32□□□□□ -1.08
COL3A1-206ENST00000487010 Q8N3U1 123 aa8.32□□□□□ -1.08
COL3A1-206ENST00000487010 UBL5Q9BZL1 73 aa8.32□□□□□ -1.08
COL3A1-206ENST00000487010 USP24Q9UPU5 2620 aa8.32□□□□□ -1.08
COL3A1-206ENST00000487010 ZFYVE26Q68DK2 2539 aa8.32□□□□□ -1.08
COL3A1-206ENST00000487010 NIPBLQ6KC79 2804 aaeCLIP8.31□□□□□ -1.08
COL3A1-206ENST00000487010 TRBV10-3A0A0K0K1G6 114 aa8.31□□□□□ -1.08
COL3A1-206ENST00000487010 DPH3Q96FX2 82 aa8.31□□□□□ -1.08
COL3A1-206ENST00000487010 GHRHP01286 108 aa8.31□□□□□ -1.08
COL3A1-206ENST00000487010 TRAV23DV6A0A075B6W5 121 aa8.3□□□□□ -1.08
COL3A1-206ENST00000487010 LYRM9A8MSI8 78 aa8.3□□□□□ -1.08
COL3A1-206ENST00000487010 Q6ZQT0 140 aa8.3□□□□□ -1.08
COL3A1-206ENST00000487010 RBM3P98179 157 aaKnown RBP8.3□□□□□ -1.08
COL3A1-206ENST00000487010 LOC110117498A0A087WWA1 95 aa8.29□□□□□ -1.08
COL3A1-206ENST00000487010 ZNF561-AS1K7EIQ3 104 aa8.29□□□□□ -1.08
COL3A1-206ENST00000487010 C10orf25Q5T742 122 aa8.29□□□□□ -1.08
COL3A1-206ENST00000487010 UNQ6190/PRO20217Q6UXQ8 127 aa8.28□□□□□ -1.08
COL3A1-206ENST00000487010 C6orf223Q8N319 242 aa8.28□□□□□ -1.08
COL3A1-206ENST00000487010 MUC7Q8TAX7 377 aa8.28□□□□□ -1.08
COL3A1-206ENST00000487010 ANK3Q12955 4377 aaKnown RBP8.27□□□□□ -1.09
COL3A1-206ENST00000487010 IGLV6-57P01721 117 aa8.27□□□□□ -1.09
COL3A1-206ENST00000487010 SPAG11BQ08648 103 aa8.27□□□□□ -1.09
COL3A1-206ENST00000487010 LINC00482Q8N8I6 264 aa8.27□□□□□ -1.09
COL3A1-206ENST00000487010 A0A0J9YWU9 116 aa8.26□□□□□ -1.09
COL3A1-206ENST00000487010 DEFB4AO15263 64 aa8.26□□□□□ -1.09
COL3A1-206ENST00000487010 IGHV4-30-4P0DP06 118 aa8.26□□□□□ -1.09
COL3A1-206ENST00000487010 KRTAP10-3P60369 221 aa8.26□□□□□ -1.09
COL3A1-206ENST00000487010 LAMTOR3Q9UHA4 124 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms