RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 WIPF1O43516 503 aa8.88□□□□□ -0.99
SHROOM3-208ENST00000486758 SOSTDC1Q6X4U4 206 aa8.88□□□□□ -0.99
SHROOM3-208ENST00000486758 IGLV10-54A0A075B6I4 117 aa8.87□□□□□ -0.99
SHROOM3-208ENST00000486758 TMEM86BQ8N661 226 aa8.87□□□□□ -0.99
SHROOM3-208ENST00000486758 FAM240AA0A1B0GVK7 77 aa8.87□□□□□ -0.99
SHROOM3-208ENST00000486758 A0A087WYN8 130 aa8.86□□□□□ -0.99
SHROOM3-208ENST00000486758 COX7B2Q8TF08 81 aa8.86□□□□□ -0.99
SHROOM3-208ENST00000486758 COX7CP15954 63 aa8.86□□□□□ -0.99
SHROOM3-208ENST00000486758 C1orf43Q9BWL3 253 aa8.86□□□□□ -0.99
SHROOM3-208ENST00000486758 SMIM1B2RUZ4 78 aa8.86□□□□□ -0.99
SHROOM3-208ENST00000486758 C4orf3Q8WVX3 66 aa8.86□□□□□ -0.99
SHROOM3-208ENST00000486758 LY6G6DO95868 133 aa8.85□□□□□ -0.99
SHROOM3-208ENST00000486758 ODF3L2Q3SX64 289 aa8.85□□□□□ -0.99
SHROOM3-208ENST00000486758 S100A7L2Q5SY68 101 aa8.85□□□□□ -0.99
SHROOM3-208ENST00000486758 SMIM11BQ8TCY0 68 aa8.85□□□□□ -0.99
SHROOM3-208ENST00000486758 NOTCH1P46531 2555 aa8.85□□□□□ -0.99
SHROOM3-208ENST00000486758 C20orf197Q8N268 126 aa8.85□□□□□ -0.99
SHROOM3-208ENST00000486758 TMEM89A2RUT3 159 aa8.84□□□□□ -0.99
SHROOM3-208ENST00000486758 K7EQD1 137 aa8.84□□□□□ -0.99
SHROOM3-208ENST00000486758 TRBV7-7A0A0K0K1E9 115 aa8.84□□□□□ -1
SHROOM3-208ENST00000486758 KIR2DL5BQ8NHK3 375 aa8.84□□□□□ -1
SHROOM3-208ENST00000486758 GHRHP01286 108 aa8.83□□□□□ -1
SHROOM3-208ENST00000486758 PRR3P79522 188 aaKnown RBP8.83□□□□□ -1
SHROOM3-208ENST00000486758 ORMDL1Q9P0S3 153 aa8.83□□□□□ -1
SHROOM3-208ENST00000486758 USP17L23D6RBM5 183 aa8.83□□□□□ -1
SHROOM3-208ENST00000486758 CXCL5P42830 114 aa8.83□□□□□ -1
SHROOM3-208ENST00000486758 ENHOQ6UWT2 76 aa8.82□□□□□ -1
SHROOM3-208ENST00000486758 LINC00337Q8N6G1 96 aa8.82□□□□□ -1
SHROOM3-208ENST00000486758 IMUPQ9GZP8 106 aa8.82□□□□□ -1
SHROOM3-208ENST00000486758 LINC00846Q9NV44 126 aa8.82□□□□□ -1
SHROOM3-208ENST00000486758 HILS1P60008 231 aa8.82□□□□□ -1
SHROOM3-208ENST00000486758 LINC00482Q8N8I6 264 aa8.82□□□□□ -1
SHROOM3-208ENST00000486758 HRCT1Q6UXD1 115 aa8.81□□□□□ -1
SHROOM3-208ENST00000486758 LINC00526Q96FQ7 95 aa8.81□□□□□ -1
SHROOM3-208ENST00000486758 UBL5Q9BZL1 73 aa8.81□□□□□ -1
SHROOM3-208ENST00000486758 TIMM17BO60830 172 aa8.81□□□□□ -1
SHROOM3-208ENST00000486758 RPL18AQ02543 176 aaKnown RBP8.81□□□□□ -1
SHROOM3-208ENST00000486758 OVOL2Q9BRP0 275 aa8.81□□□□□ -1
SHROOM3-208ENST00000486758 PKIGQ9Y2B9 76 aa8.8□□□□□ -1
SHROOM3-208ENST00000486758 GYPEP15421 78 aa8.8□□□□□ -1
SHROOM3-208ENST00000486758 F8WDY8 70 aa8.79□□□□□ -1
SHROOM3-208ENST00000486758 DEFB135Q30KP9 77 aa8.79□□□□□ -1
SHROOM3-208ENST00000486758 LINC01006Q8NI28 216 aa8.79□□□□□ -1
SHROOM3-208ENST00000486758 CCL18P55774 89 aa8.79□□□□□ -1
SHROOM3-208ENST00000486758 SEC61GP60059 68 aa8.79□□□□□ -1
SHROOM3-208ENST00000486758 C1orf158Q8N1D5 194 aa8.79□□□□□ -1
SHROOM3-208ENST00000486758 H0YGX0 51 aa8.78□□□□□ -1
SHROOM3-208ENST00000486758 C9orf129Q5T035 196 aaKnown RBP8.78□□□□□ -1
SHROOM3-208ENST00000486758 SCXQ7RTU7 201 aa8.78□□□□□ -1
SHROOM3-208ENST00000486758 ANGP03950 147 aaKnown RBP8.77□□□□□ -1.01
SHROOM3-208ENST00000486758 LRRC75A-AS1Q8N1F1 130 aa8.77□□□□□ -1.01
SHROOM3-208ENST00000486758 CDC42SE2Q9NRR3 84 aa8.77□□□□□ -1.01
SHROOM3-208ENST00000486758 SERP2Q8N6R1 65 aa8.76□□□□□ -1.01
SHROOM3-208ENST00000486758 FAM19A1Q7Z5A9 133 aa8.76□□□□□ -1.01
SHROOM3-208ENST00000486758 MRAPQ8TCY5 172 aa8.76□□□□□ -1.01
SHROOM3-208ENST00000486758 VWFP04275 2813 aa8.76□□□□□ -1.01
SHROOM3-208ENST00000486758 IGLV4-60A0A075B6I1 120 aa8.75□□□□□ -1.01
SHROOM3-208ENST00000486758 SS18Q15532 418 aa8.75□□□□□ -1.01
SHROOM3-208ENST00000486758 C4orf26Q17RF5 130 aa8.75□□□□□ -1.01
SHROOM3-208ENST00000486758 NTM-AS1Q6ZSK4 140 aa8.75□□□□□ -1.01
SHROOM3-208ENST00000486758 SNURFQ9Y675 71 aa8.75□□□□□ -1.01
SHROOM3-208ENST00000486758 A8MTW9 85 aa8.73□□□□□ -1.01
SHROOM3-208ENST00000486758 KLK9Q2XQG4 91 aa8.73□□□□□ -1.01
SHROOM3-208ENST00000486758 FAM104AQ969W3 186 aa8.73□□□□□ -1.01
SHROOM3-208ENST00000486758 UPK3BQ9BT76 320 aa8.73□□□□□ -1.01
SHROOM3-208ENST00000486758 C16orf74Q96GX8 76 aa8.73□□□□□ -1.01
SHROOM3-208ENST00000486758 DAD1P61803 113 aa8.72□□□□□ -1.01
SHROOM3-208ENST00000486758 RBM3P98179 157 aaKnown RBP8.72□□□□□ -1.01
SHROOM3-208ENST00000486758 RPL28P46779 137 aaKnown RBP8.72□□□□□ -1.01
SHROOM3-208ENST00000486758 PDZD2O15018 2839 aa8.72□□□□□ -1.01
SHROOM3-208ENST00000486758 C9orf116Q5BN46 136 aaPredicted RBP8.72□□□□□ -1.01
SHROOM3-208ENST00000486758 C11orf72Q8NBR9 251 aa8.72□□□□□ -1.01
SHROOM3-208ENST00000486758 IGLV5-39A0A0G2JS06 123 aa8.71□□□□□ -1.01
SHROOM3-208ENST00000486758 C6orf99Q4VX62 202 aa8.71□□□□□ -1.01
SHROOM3-208ENST00000486758 LINC00269Q8N2A0 174 aa8.71□□□□□ -1.02
SHROOM3-208ENST00000486758 CYSTM1Q9H1C7 97 aa8.7□□□□□ -1.02
SHROOM3-208ENST00000486758 PRB2P02812 416 aaPredicted RBP8.7□□□□□ -1.02
SHROOM3-208ENST00000486758 TRBV10-1A0A0K0K1A3 114 aa8.7□□□□□ -1.02
SHROOM3-208ENST00000486758 IGKV2-28A0A075B6P5 120 aa8.69□□□□□ -1.02
SHROOM3-208ENST00000486758 IGKV2D-28P01615 120 aa8.69□□□□□ -1.02
SHROOM3-208ENST00000486758 DEFB121Q5J5C9 76 aa8.69□□□□□ -1.02
SHROOM3-208ENST00000486758 FAM222AQ5U5X8 452 aa8.69□□□□□ -1.02
SHROOM3-208ENST00000486758 TMEM258P61165 79 aa8.69□□□□□ -1.02
SHROOM3-208ENST00000486758 V9GYY9 64 aa8.68□□□□□ -1.02
SHROOM3-208ENST00000486758 CMC4P56277 68 aaPredicted RBP8.68□□□□□ -1.02
SHROOM3-208ENST00000486758 Q6JHZ5 121 aa8.67□□□□□ -1.02
SHROOM3-208ENST00000486758 A0A096LNT2 108 aa8.67□□□□□ -1.02
SHROOM3-208ENST00000486758 IBA57-AS1B1ANH7 110 aa8.67□□□□□ -1.02
SHROOM3-208ENST00000486758 TRBV6-8A0A0A6YYG3 113 aa8.66□□□□□ -1.02
SHROOM3-208ENST00000486758 JMJD7-PLA2G4BH0Y9G9 81 aa8.66□□□□□ -1.02
SHROOM3-208ENST00000486758 IGLV5-45A0A087WSX0 123 aa8.66□□□□□ -1.02
SHROOM3-208ENST00000486758 TMEM256-PLSCR3K7ERE1 68 aa8.66□□□□□ -1.02
SHROOM3-208ENST00000486758 CRYGAP11844 174 aa8.66□□□□□ -1.02
SHROOM3-208ENST00000486758 DPH3Q96FX2 82 aa8.66□□□□□ -1.02
SHROOM3-208ENST00000486758 MDFIQ99750 246 aa8.66□□□□□ -1.02
SHROOM3-208ENST00000486758 CR1P17927 2039 aa8.66□□□□□ -1.02
SHROOM3-208ENST00000486758 FAM236DA0A1B0GTK5 79 aa8.66□□□□□ -1.02
SHROOM3-208ENST00000486758 FAM236CP0DP71 79 aa8.66□□□□□ -1.02
SHROOM3-208ENST00000486758 LINC01561Q8N1V8 128 aa8.65□□□□□ -1.02
SHROOM3-208ENST00000486758 XAGE1AQ9HD64 81 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms