RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 BPESC1Q9GZL8 116 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 NAA60Q9H7X0 242 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 NXT2Q9NPJ8 142 aaKnown RBP0.68□□□□□ -2.3
SMC4-218ENST00000486711 GNG13Q9P2W3 67 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 LSM2Q9Y333 95 aaKnown RBP0.68□□□□□ -2.3
SMC4-218ENST00000486711 BTAF1O14981 1849 aa0.68□□□□□ -2.3
SMC4-218ENST00000486711 PLXNA1Q9UIW2 1896 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 UBE2L5PA0A1B0GUS4 154 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 RBAKDNA6NC62 111 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 CRYM-AS1A6NIL9 109 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 CPSF4LA6NMK7 179 aaKnown RBP0.67□□□□□ -2.3
SMC4-218ENST00000486711 CEBPZOSA8MTT3 80 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 OOSP1A8MZH6 123 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 H3BUA1 57 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 M0R135 149 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 HMGN4O00479 90 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 DLEU1O43261 78 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 SSSCA1O60232 199 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 BCE1O60756 84 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 NDUFB1O75438 58 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 NMBP08949 121 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 SMIM13P0DJ93 91 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 CCL3L1P16619 93 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 CKS1BP61024 79 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 UBE2L3P68036 154 aaKnown RBP0.67□□□□□ -2.3
SMC4-218ENST00000486711 HSD52Q0P140 79 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 Q5BKY6 102 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 C10orf128Q5T292 105 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 BVES-AS1Q5T3Y7 98 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 ATP5EP2Q5VTU8 51 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 C10orf113Q5VZT2 155 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 HEPN1Q6WQI6 88 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 C6orf201Q7Z4U5 140 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 TTC9CQ8N5M4 171 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 TSKUQ8WUA8 353 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 IFI27L1Q96BM0 104 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 COX14Q96I36 57 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 DSCR8Q96T75 97 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 PSENENQ9NZ42 101 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 IER3IP1Q9Y5U9 82 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 ATG2AQ2TAZ0 1938 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 PAPPA2Q9BXP8 1791 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 ZNF462Q96JM2 2506 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 UBR3Q6ZT12 1888 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 NRXN2Q9P2S2 1712 aa0.67□□□□□ -2.3
SMC4-218ENST00000486711 COL4A6Q14031 1691 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 TRAV12-2A0A075B6T6 113 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 TRBV7-1A0A0A6YYK4 115 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 TRAV13-2A0A0B4J235 113 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 TRBV6-1A0A0K0K1D8 114 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 A0A1B0GUT8 65 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 LOC105371267A0A1B0GV96 52 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 A0A1B0GWA3 101 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 C7orf77A4D0Y5 90 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 A6NIN4 97 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 TMEM14DPA8MWL7 114 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 H0YGX0 51 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 K7EP13 123 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 M0R2P5 195 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 ATOX1O00244 68 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 TFF1P04155 84 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 IFITM1P13164 125 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 CBLN1P23435 193 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 IFI27P40305 119 aaPredicted RBP0.66□□□□□ -2.3
SMC4-218ENST00000486711 ATXN8Q156A1 80 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 Q56UQ5 140 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 MINOS1Q5TGZ0 78 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 NDUFA11Q86Y39 141 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 USMG5Q96IX5 58 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 C20orf78Q9BR46 151 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 RPRMQ9NS64 109 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 HIGD1BQ9P298 99 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 ERG28Q9UKR5 140 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 MDN1Q9NU22 5596 aa0.66□□□□□ -2.3
SMC4-218ENST00000486711 PLXNA2O75051 1894 aa0.65□□□□□ -2.3
SMC4-218ENST00000486711 TANC1Q9C0D5 1861 aa0.65□□□□□ -2.3
SMC4-218ENST00000486711 TRAV21A0A0B4J279 112 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 TRBV10-3A0A0K0K1G6 114 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 SPTY2D1-AS1A0A0U1RR47 76 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 A0A1B0GV90 55 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 SMIM27A0A1W2PRY6 76 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 hADV29S1A0JD25 119 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 FAM223BA6NKX1 122 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 H0YGG7 62 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 CCDC179H3BU77 68 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 M0R3E3 92 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 GNG7O60262 68 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 COX8AP10176 69 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 CD52P31358 61 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 EDDM3BP56851 147 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 PRCDQ00LT1 54 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 COX17Q14061 63 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 NMSQ5H8A3 153 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 TMEM170BQ5T4T1 132 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 SPANXN1Q5VSR9 72 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 FAM223AQ8IWN6 122 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 TRGV9Q99603 122 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 WFDC6Q9BQY6 131 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 UBL5Q9BZL1 73 aa0.65□□□□□ -2.31
SMC4-218ENST00000486711 SPCS1Q9Y6A9 102 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms