RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 UQCR10Q9UDW1 63 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 NDUFA12Q9UI09 145 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 STARD9Q9P2P6 4700 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 NYNRINQ9P2P1 1898 aaKnown RBP1.49□□□□□ -2.17
VPS41-213ENST00000485955 HMCN2Q8NDA2 5059 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 A0A087WSZ3 146 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 hADV29S1A0JD25 119 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 IGLC7A0M8Q6 106 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 ODF3BA8MYP8 253 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 E7EUB6 86 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 ATOX1O00244 68 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 ERC2-IT1O76042 136 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 IGKCP01834 107 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 APOC3P02656 99 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 MIFP14174 115 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 CBLN1P23435 193 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 RBM3P98179 157 aaKnown RBP1.48□□□□□ -2.17
VPS41-213ENST00000485955 KRTAP25-1Q3LHN0 102 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 TDRG1Q3Y452 100 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 SLC48A1Q6P1K1 146 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 SPINT4Q6UDR6 99 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 TMEM136Q6ZRR5 245 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 ZCCHC23Q6ZST2 131 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 TMEM254Q8TBM7 123 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 MYOZ3Q8TDC0 251 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 TSLPQ969D9 159 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 TMEM141Q96I45 108 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 SMCO4Q9NRQ5 59 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 USF3Q68DE3 2245 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 SORL1Q92673 2214 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 MYH4Q9Y623 1939 aa1.48□□□□□ -2.17
VPS41-213ENST00000485955 NCOA6Q14686 2063 aaPredicted RBP1.47□□□□□ -2.17
VPS41-213ENST00000485955 HSPG2P98160 4391 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 PKHD1P08F94 4074 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 RNF213Q63HN8 5207 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 FCGBPQ9Y6R7 5405 aaPredicted RBP1.47□□□□□ -2.17
VPS41-213ENST00000485955 PSCAO43653 123 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 CCKP06307 115 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 KRTDAPP60985 99 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 DEFA5Q01523 94 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 Q1T7F1 81 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 DEFB113Q30KQ7 82 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 Q5BKY6 102 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 RPL7L1Q6DKI1 246 aaKnown RBP1.47□□□□□ -2.17
VPS41-213ENST00000485955 OR8B3Q8NGG8 313 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 S100A16Q96FQ6 103 aaKnown RBP1.47□□□□□ -2.17
VPS41-213ENST00000485955 C20orf78Q9BR46 151 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 MRPL35Q9NZE8 188 aaKnown RBP1.47□□□□□ -2.17
VPS41-213ENST00000485955 PLXNA2O75051 1894 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 MUC4Q99102 2169 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 PLIN4Q96Q06 1357 aa1.47□□□□□ -2.17
VPS41-213ENST00000485955 DYNC1H1Q14204 4646 aaKnown RBP1.46□□□□□ -2.18
VPS41-213ENST00000485955 DNAH10Q8IVF4 4471 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 TRAV10A0A0B4J240 114 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 TRAV17A0A0B4J275 112 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 TRBV10-3A0A0K0K1G6 114 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 NAP1L6A6NFF2 107 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 PDCD5O14737 125 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 ASAH2BP0C7U1 165 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 CXCL8P10145 99 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 FAUP35544 74 aaKnown RBP1.46□□□□□ -2.18
VPS41-213ENST00000485955 HINT1P49773 126 aaPredicted RBP1.46□□□□□ -2.18
VPS41-213ENST00000485955 LINC00299Q6ZSB3 139 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 Q8TAT8 98 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 FAM213BQ8TBF2 198 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 PPDPFLQ8WWR9 84 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 MGST2Q99735 147 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 HIGD2AQ9BW72 106 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 RABAC1Q9UI14 185 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 SPCS1Q9Y6A9 102 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 ANAPC1Q9H1A4 1944 aa1.46□□□□□ -2.18
VPS41-213ENST00000485955 MYO7BQ6PIF6 2116 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 MYOFQ9NZM1 2061 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 TMSB15BA0A087X1C1 80 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 TRAV12-1A0A0B4J245 112 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 TCRBV4S1A1TA0A5B7 111 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 CRYM-AS1A6NIL9 109 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 PRB4P10163 310 aaPredicted RBP1.45□□□□□ -2.18
VPS41-213ENST00000485955 GNG11P61952 73 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 UBE2G1P62253 170 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 SEC11AP67812 179 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 CCL8P80075 99 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 ERHP84090 104 aaKnown RBP1.45□□□□□ -2.18
VPS41-213ENST00000485955 MIR22HGQ0VDD5 57 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 ADIRFQ15847 76 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 C9orf116Q5BN46 136 aaPredicted RBP1.45□□□□□ -2.18
VPS41-213ENST00000485955 C2orf82Q6UX34 121 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 ZNF833PQ6ZTB9 187 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 ST20Q9HBF5 79 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 LINC00474Q9P2X8 69 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 CACFD1Q9UGQ2 172 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 PRR14LQ5THK1 2151 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 ROS1P08922 2347 aa1.45□□□□□ -2.18
VPS41-213ENST00000485955 PLECQ15149 4684 aaKnown RBP1.45□□□□□ -2.18
VPS41-213ENST00000485955 MDC1Q14676 2089 aaKnown RBP1.44□□□□□ -2.18
VPS41-213ENST00000485955 CR1P17927 2039 aa1.44□□□□□ -2.18
VPS41-213ENST00000485955 MYCBP2O75592 4640 aa1.44□□□□□ -2.18
VPS41-213ENST00000485955 TRBV7-1A0A0A6YYK4 115 aa1.44□□□□□ -2.18
VPS41-213ENST00000485955 TRAV13-2A0A0B4J235 113 aa1.44□□□□□ -2.18
VPS41-213ENST00000485955 A6NIN4 97 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 174.9 ms