RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 LINC01600Q96MT4 127 aa10.9□□□□□ -0.66
COL9A3-212ENST00000481800 SMCO4Q9NRQ5 59 aa10.9□□□□□ -0.66
COL9A3-212ENST00000481800 PSORS1C2Q9UIG4 136 aa10.9□□□□□ -0.66
COL9A3-212ENST00000481800 FAM168BA1KXE4 195 aa10.89□□□□□ -0.67
COL9A3-212ENST00000481800 FAM19A5Q7Z5A7 132 aaPredicted RBP10.89□□□□□ -0.67
COL9A3-212ENST00000481800 Q8IZM0 81 aa10.89□□□□□ -0.67
COL9A3-212ENST00000481800 CDKN2A-AS1Q9UH64 79 aa10.89□□□□□ -0.67
COL9A3-212ENST00000481800 C1orf137Q5JT78 98 aa10.88□□□□□ -0.67
COL9A3-212ENST00000481800 LINC01546A6NGU7 62 aa10.87□□□□□ -0.67
COL9A3-212ENST00000481800 LINC00469Q8N7U9 141 aa10.87□□□□□ -0.67
COL9A3-212ENST00000481800 TINCRA0A1B0GVN0 87 aa10.84□□□□□ -0.67
COL9A3-212ENST00000481800 M0QXV9 152 aa10.84□□□□□ -0.67
COL9A3-212ENST00000481800 APOC3P02656 99 aa10.84□□□□□ -0.67
COL9A3-212ENST00000481800 UBE2BP63146 152 aa10.84□□□□□ -0.67
COL9A3-212ENST00000481800 NDUFA5Q16718 116 aa10.84□□□□□ -0.67
COL9A3-212ENST00000481800 CST9LQ9H4G1 147 aa10.84□□□□□ -0.67
COL9A3-212ENST00000481800 TRAPPC1Q9Y5R8 145 aa10.84□□□□□ -0.67
COL9A3-212ENST00000481800 F8VRH5 84 aa10.83□□□□□ -0.68
COL9A3-212ENST00000481800 CXCL5P42830 114 aa10.83□□□□□ -0.68
COL9A3-212ENST00000481800 HMCN2Q8NDA2 5059 aa10.82□□□□□ -0.68
COL9A3-212ENST00000481800 PMVKQ15126 192 aa10.82□□□□□ -0.68
COL9A3-212ENST00000481800 PDZD11Q5EBL8 140 aa10.82□□□□□ -0.68
COL9A3-212ENST00000481800 C9orf129Q5T035 196 aaKnown RBP10.82□□□□□ -0.68
COL9A3-212ENST00000481800 SMIM1B2RUZ4 78 aa10.81□□□□□ -0.68
COL9A3-212ENST00000481800 SNAPINO95295 136 aa10.81□□□□□ -0.68
COL9A3-212ENST00000481800 IGLV7-43P04211 117 aa10.81□□□□□ -0.68
COL9A3-212ENST00000481800 SVBPQ8N300 66 aa10.81□□□□□ -0.68
COL9A3-212ENST00000481800 KRTAP7-1Q8IUC3 87 aa10.8□□□□□ -0.68
COL9A3-212ENST00000481800 COX7B2Q8TF08 81 aa10.8□□□□□ -0.68
COL9A3-212ENST00000481800 IGLV5-45A0A087WSX0 123 aa10.79□□□□□ -0.68
COL9A3-212ENST00000481800 LINC00614P0C842 121 aa10.79□□□□□ -0.68
COL9A3-212ENST00000481800 KRTAP10-8P60410 259 aa10.79□□□□□ -0.68
COL9A3-212ENST00000481800 KRTAP11-1Q8IUC1 163 aa10.79□□□□□ -0.68
COL9A3-212ENST00000481800 DIRC1Q969H9 104 aa10.79□□□□□ -0.68
COL9A3-212ENST00000481800 H3BRM9 83 aa10.78□□□□□ -0.68
COL9A3-212ENST00000481800 SPINK8P0C7L1 97 aa10.78□□□□□ -0.68
COL9A3-212ENST00000481800 NDUFA6P56556 154 aa10.78□□□□□ -0.68
COL9A3-212ENST00000481800 C18orf32Q8TCD1 76 aa10.78□□□□□ -0.68
COL9A3-212ENST00000481800 XAGE1AQ9HD64 81 aa10.78□□□□□ -0.68
COL9A3-212ENST00000481800 RAB5BP61020 215 aa10.77□□□□□ -0.69
COL9A3-212ENST00000481800 HBDP02042 147 aa10.76□□□□□ -0.69
COL9A3-212ENST00000481800 LBHQ53QV2 105 aaPredicted RBP10.75□□□□□ -0.69
COL9A3-212ENST00000481800 C22orf24Q9Y442 160 aa10.75□□□□□ -0.69
COL9A3-212ENST00000481800 A0A096LNJ9 63 aa10.74□□□□□ -0.69
COL9A3-212ENST00000481800 URB1-AS1Q96HZ7 61 aa10.74□□□□□ -0.69
COL9A3-212ENST00000481800 IGLC3P0DOY3 106 aa10.73□□□□□ -0.69
COL9A3-212ENST00000481800 PMCHL1Q16048 86 aa10.73□□□□□ -0.69
COL9A3-212ENST00000481800 H0Y9J4 135 aa10.72□□□□□ -0.69
COL9A3-212ENST00000481800 ATP5LO75964 103 aa10.72□□□□□ -0.69
COL9A3-212ENST00000481800 ODF1Q14990 250 aa10.72□□□□□ -0.69
COL9A3-212ENST00000481800 MRPL55Q7Z7F7 128 aaKnown RBP10.7□□□□□ -0.7
COL9A3-212ENST00000481800 BAGE3Q86Y29 109 aa10.7□□□□□ -0.7
COL9A3-212ENST00000481800 TP73-AS1Q9UF72 201 aa10.7□□□□□ -0.7
COL9A3-212ENST00000481800 NUPR1O60356 82 aa10.69□□□□□ -0.7
COL9A3-212ENST00000481800 ZNF22P17026 224 aaPredicted RBP10.69□□□□□ -0.7
COL9A3-212ENST00000481800 TNXBP22105 4242 aa10.69□□□□□ -0.7
COL9A3-212ENST00000481800 IGLV5-39A0A0G2JS06 123 aa10.67□□□□□ -0.7
COL9A3-212ENST00000481800 PRR26Q8N8Z3 221 aa10.67□□□□□ -0.7
COL9A3-212ENST00000481800 TMEM170BQ5T4T1 132 aa10.66□□□□□ -0.7
COL9A3-212ENST00000481800 CHCHD1Q96BP2 118 aaKnown RBP10.66□□□□□ -0.7
COL9A3-212ENST00000481800 YPEL4Q96NS1 127 aa10.66□□□□□ -0.7
COL9A3-212ENST00000481800 ZNF861PO60384 105 aa10.65□□□□□ -0.7
COL9A3-212ENST00000481800 PFN2P35080 140 aa10.65□□□□□ -0.7
COL9A3-212ENST00000481800 NKAPP1Q8N9T2 125 aa10.65□□□□□ -0.7
COL9A3-212ENST00000481800 LINC00167Q96N53 147 aa10.65□□□□□ -0.7
COL9A3-212ENST00000481800 C11orf86A6NJI1 115 aa10.64□□□□□ -0.71
COL9A3-212ENST00000481800 CHTOPQ9Y3Y2 248 aaKnown RBP10.64□□□□□ -0.71
COL9A3-212ENST00000481800 IGLV1-50A0A075B6I6 118 aa10.63□□□□□ -0.71
COL9A3-212ENST00000481800 GAGE10A6NGK3 116 aa10.63□□□□□ -0.71
COL9A3-212ENST00000481800 RPL37AP8A6NKH3 93 aa10.63□□□□□ -0.71
COL9A3-212ENST00000481800 BCE1O60756 84 aa10.62□□□□□ -0.71
COL9A3-212ENST00000481800 RPL28P46779 137 aaKnown RBP10.62□□□□□ -0.71
COL9A3-212ENST00000481800 SFTA2Q6UW10 78 aa10.62□□□□□ -0.71
COL9A3-212ENST00000481800 CBLN2Q8IUK8 224 aa10.62□□□□□ -0.71
COL9A3-212ENST00000481800 IFI27L1Q96BM0 104 aa10.62□□□□□ -0.71
COL9A3-212ENST00000481800 ERG28Q9UKR5 140 aa10.62□□□□□ -0.71
COL9A3-212ENST00000481800 IGLV5-37A0A075B6J1 123 aa10.61□□□□□ -0.71
COL9A3-212ENST00000481800 KRTAP1-4P0C5Y4 121 aa10.61□□□□□ -0.71
COL9A3-212ENST00000481800 ZNF625Q96I27 306 aaPredicted RBP10.61□□□□□ -0.71
COL9A3-212ENST00000481800 UBR4Q5T4S7 5183 aa10.61□□□□□ -0.71
COL9A3-212ENST00000481800 HSBP1O75506 76 aa10.6□□□□□ -0.71
COL9A3-212ENST00000481800 COX17Q14061 63 aa10.6□□□□□ -0.71
COL9A3-212ENST00000481800 TRAV12-1A0A0B4J245 112 aa10.59□□□□□ -0.71
COL9A3-212ENST00000481800 RPL13AP40429 203 aaKnown RBP10.59□□□□□ -0.71
COL9A3-212ENST00000481800 SND1-IT1Q9HBX3 110 aa10.59□□□□□ -0.71
COL9A3-212ENST00000481800 RPL24P83731 157 aaKnown RBP10.57□□□□□ -0.72
COL9A3-212ENST00000481800 TRGC2P03986 189 aa10.56□□□□□ -0.72
COL9A3-212ENST00000481800 FAM19A2Q8N3H0 131 aa10.56□□□□□ -0.72
COL9A3-212ENST00000481800 IGKV2-28A0A075B6P5 120 aa10.55□□□□□ -0.72
COL9A3-212ENST00000481800 TMEM223A0PJW6 202 aa10.55□□□□□ -0.72
COL9A3-212ENST00000481800 SCO1O75880 301 aa10.55□□□□□ -0.72
COL9A3-212ENST00000481800 IGKV2D-28P01615 120 aa10.55□□□□□ -0.72
COL9A3-212ENST00000481800 UBE2AP49459 152 aa10.55□□□□□ -0.72
COL9A3-212ENST00000481800 LINC00158P58513 81 aa10.55□□□□□ -0.72
COL9A3-212ENST00000481800 VPREB1P12018 145 aa10.54□□□□□ -0.72
COL9A3-212ENST00000481800 SLC7A5P1Q8MH63 180 aa10.53□□□□□ -0.72
COL9A3-212ENST00000481800 H0Y8G0 127 aa10.52□□□□□ -0.73
COL9A3-212ENST00000481800 ATP6V1G1O75348 118 aa10.52□□□□□ -0.73
COL9A3-212ENST00000481800 A0A0U1RRA0 63 aa10.51□□□□□ -0.73
COL9A3-212ENST00000481800 LEPROTL1O95214 131 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms