RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 PRO0255Q9UI72 69 aa4.33□□□□□ -1.72
SF3B1-209ENST00000479532 COL7A1Q02388 2944 aa4.33□□□□□ -1.72
SF3B1-209ENST00000479532 MUC4Q99102 2169 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 IGKV2D-26A0A0A0MRZ7 120 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 IGHV3-73A0A0B4J1V6 119 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 TRBV10-2A0A0K0K1G8 114 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 F8VRH5 84 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 H3BNG1 76 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 NXPH4O95158 308 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 MGPP08493 103 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 IFI27P40305 119 aaPredicted RBP4.32□□□□□ -1.72
SF3B1-209ENST00000479532 HIST1H4AP62805 103 aaKnown RBP4.32□□□□□ -1.72
SF3B1-209ENST00000479532 RHOHQ15669 191 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 ATXN8Q156A1 80 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 ZNF56Q15929 161 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 ZC2HC1BQ5TFG8 222 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 LINC00643Q86TS7 51 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 ICOSQ9Y6W8 199 aa4.32□□□□□ -1.72
SF3B1-209ENST00000479532 TENM3Q9P273 2699 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 IGLV5-52A0A0A0MRZ9 124 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 A0A0J9YY99 117 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 TRBV6-4A0A1B0GX49 114 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 H7C1H1 209 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 K7EQD1 137 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 TCL1BO95988 128 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 PSMB2P49721 201 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 C14orf178Q8N769 122 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-209ENST00000479532 COPS9Q8WXC6 57 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 UBE2WQ96B02 151 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 PLEKHB2Q96CS7 222 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 DPH3P1Q9H4G8 78 aa4.31□□□□□ -1.72
SF3B1-209ENST00000479532 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.3□□□□□ -1.72
SF3B1-209ENST00000479532 TRBV30A0A0K0K1B3 111 aa4.3□□□□□ -1.72
SF3B1-209ENST00000479532 D6R8Y8 96 aa4.3□□□□□ -1.72
SF3B1-209ENST00000479532 GATA1P15976 413 aaPredicted RBP4.3□□□□□ -1.72
SF3B1-209ENST00000479532 GAGE2AQ6NT46 116 aa4.3□□□□□ -1.72
SF3B1-209ENST00000479532 C5orf38Q86SI9 138 aa4.3□□□□□ -1.72
SF3B1-209ENST00000479532 UBE2DNLQ8IWF7 75 aa4.3□□□□□ -1.72
SF3B1-209ENST00000479532 Q8N8P6 123 aa4.3□□□□□ -1.72
SF3B1-209ENST00000479532 JPT2Q9H910 190 aa4.3□□□□□ -1.72
SF3B1-209ENST00000479532 PRO1854Q9UHT4 67 aa4.3□□□□□ -1.72
SF3B1-209ENST00000479532 TGP01266 2768 aa4.29□□□□□ -1.72
SF3B1-209ENST00000479532 TRBV10-1A0A0K0K1A3 114 aa4.29□□□□□ -1.72
SF3B1-209ENST00000479532 EPM2AB3EWF7 344 aa4.29□□□□□ -1.72
SF3B1-209ENST00000479532 TRACP01848 142 aa4.29□□□□□ -1.72
SF3B1-209ENST00000479532 CCL18P55774 89 aa4.29□□□□□ -1.72
SF3B1-209ENST00000479532 MRPS36P82909 103 aaKnown RBP4.29□□□□□ -1.72
SF3B1-209ENST00000479532 RPL36AP83881 106 aaKnown RBP4.29□□□□□ -1.72
SF3B1-209ENST00000479532 SLC25A29Q8N8R3 303 aa4.29□□□□□ -1.72
SF3B1-209ENST00000479532 APLNQ9ULZ1 77 aa4.29□□□□□ -1.72
SF3B1-209ENST00000479532 NACAE9PAV3 2078 aa4.29□□□□□ -1.72
SF3B1-209ENST00000479532 DNAH7Q8WXX0 4024 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 LOC107984156A0A0G2JMH3 177 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 BCE1O60756 84 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 NDUFC2O95298 119 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 PRSS1P07477 247 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 PRSS2P07478 247 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 CKS2P33552 79 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 HERVK_113P61574 105 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 LINC01620Q4KN68 170 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 MRPL51Q4U2R6 128 aaKnown RBP4.28□□□□□ -1.72
SF3B1-209ENST00000479532 ARL17AQ8IVW1 177 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 DPH3Q96FX2 82 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 VSIG2Q96IQ7 327 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 STAB2Q8WWQ8 2551 aa4.28□□□□□ -1.72
SF3B1-209ENST00000479532 IGLV2-18A0A075B6J9 118 aa4.27□□□□□ -1.73
SF3B1-209ENST00000479532 A0A096LPF7 62 aa4.27□□□□□ -1.73
SF3B1-209ENST00000479532 FAM236AA0A1B0GUQ0 79 aa4.27□□□□□ -1.73
SF3B1-209ENST00000479532 FAM236BA0A1B0GV22 79 aa4.27□□□□□ -1.73
SF3B1-209ENST00000479532 LY6G6CO95867 125 aa4.27□□□□□ -1.73
SF3B1-209ENST00000479532 PPP1R17O96001 155 aa4.27□□□□□ -1.73
SF3B1-209ENST00000479532 ORMDL2Q53FV1 153 aa4.27□□□□□ -1.73
SF3B1-209ENST00000479532 Q75L30 129 aa4.27□□□□□ -1.73
SF3B1-209ENST00000479532 DAND5Q8N907 189 aa4.27□□□□□ -1.73
SF3B1-209ENST00000479532 KIF25-AS1Q9Y6Z4 181 aa4.27□□□□□ -1.73
SF3B1-209ENST00000479532 IGLV5-37A0A075B6J1 123 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 LOC100131303A0A0U1RQF7 123 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 IGHV3-30P01768 117 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 COX6CP09669 75 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 CFC1BP0CG36 223 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 CFC1P0CG37 223 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 IGHV3-30-5P0DP03 117 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 SEC61GP60059 68 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 SRSF9Q13242 221 aaKnown RBP eCLIP4.26□□□□□ -1.73
SF3B1-209ENST00000479532 LAGE3Q14657 143 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 Q5XG85 94 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 DAZ4Q86SG3 579 aaKnown RBP4.26□□□□□ -1.73
SF3B1-209ENST00000479532 MAPKAPK5-AS1Q8N8E1 139 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 C2orf48Q96LS8 159 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 DAZ3Q9NR90 486 aaKnown RBP4.26□□□□□ -1.73
SF3B1-209ENST00000479532 MRPL35Q9NZE8 188 aaKnown RBP4.26□□□□□ -1.73
SF3B1-209ENST00000479532 V9GYY9 64 aa4.26□□□□□ -1.73
SF3B1-209ENST00000479532 TINCRA0A1B0GVN0 87 aa4.25□□□□□ -1.73
SF3B1-209ENST00000479532 SDHAF1A6NFY7 115 aa4.25□□□□□ -1.73
SF3B1-209ENST00000479532 M0QY20 66 aa4.25□□□□□ -1.73
SF3B1-209ENST00000479532 IGHV3-33P01772 117 aa4.25□□□□□ -1.73
SF3B1-209ENST00000479532 LINC00315P59091 139 aa4.25□□□□□ -1.73
SF3B1-209ENST00000479532 C6orf226Q5I0X4 101 aa4.25□□□□□ -1.73
SF3B1-209ENST00000479532 LYPD5Q6UWN5 251 aa4.25□□□□□ -1.73
SF3B1-209ENST00000479532 SERP2Q8N6R1 65 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms