RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 TRBV10-3A0A0K0K1G6 114 aa6.37□□□□□ -1.39
SYNE1-224ENST00000478916 GAS8-AS1O95177 125 aa6.37□□□□□ -1.39
SYNE1-224ENST00000478916 AVPP01185 164 aa6.37□□□□□ -1.39
SYNE1-224ENST00000478916 LRP4O75096 1905 aa6.37□□□□□ -1.39
SYNE1-224ENST00000478916 PRR9Q5T870 116 aa6.37□□□□□ -1.39
SYNE1-224ENST00000478916 CIRBP-AS1Q8TBR5 109 aa6.37□□□□□ -1.39
SYNE1-224ENST00000478916 COL5A1P20908 1838 aaPredicted RBP6.37□□□□□ -1.39
SYNE1-224ENST00000478916 PIEZO1Q92508 2521 aa6.37□□□□□ -1.39
SYNE1-224ENST00000478916 RPS28P62857 69 aaKnown RBP6.36□□□□□ -1.39
SYNE1-224ENST00000478916 LINC00242Q5T6M2 205 aa6.36□□□□□ -1.39
SYNE1-224ENST00000478916 C11orf21Q9P2W6 132 aa6.36□□□□□ -1.39
SYNE1-224ENST00000478916 MUC4Q99102 2169 aa6.36□□□□□ -1.39
SYNE1-224ENST00000478916 A0A1B0GU69 56 aa6.36□□□□□ -1.39
SYNE1-224ENST00000478916 SMIM1B2RUZ4 78 aa6.36□□□□□ -1.39
SYNE1-224ENST00000478916 EGFEM1PQ0D2K5 195 aa6.36□□□□□ -1.39
SYNE1-224ENST00000478916 NAV3Q8IVL0 2385 aa6.36□□□□□ -1.39
SYNE1-224ENST00000478916 C4orf26Q17RF5 130 aa6.35□□□□□ -1.39
SYNE1-224ENST00000478916 RETNLBQ9BQ08 111 aa6.35□□□□□ -1.39
SYNE1-224ENST00000478916 LINC00846Q9NV44 126 aa6.35□□□□□ -1.39
SYNE1-224ENST00000478916 C1orf64Q8NEQ6 169 aa6.35□□□□□ -1.39
SYNE1-224ENST00000478916 IGLV1-51P01701 117 aa6.34□□□□□ -1.39
SYNE1-224ENST00000478916 LINC00310P59036 64 aa6.34□□□□□ -1.39
SYNE1-224ENST00000478916 UNQ6190/PRO20217Q6UXQ8 127 aa6.34□□□□□ -1.39
SYNE1-224ENST00000478916 EXPH5Q8NEV8 1989 aa6.34□□□□□ -1.39
SYNE1-224ENST00000478916 COX6A2Q02221 97 aa6.34□□□□□ -1.39
SYNE1-224ENST00000478916 CDIP1Q9H305 208 aa6.34□□□□□ -1.4
SYNE1-224ENST00000478916 TSPEAR-AS2P59090 65 aa6.33□□□□□ -1.4
SYNE1-224ENST00000478916 Q9BRP9 147 aa6.33□□□□□ -1.4
SYNE1-224ENST00000478916 CHCHD7Q9BUK0 85 aa6.33□□□□□ -1.4
SYNE1-224ENST00000478916 HIVEP3Q5T1R4 2406 aa6.33□□□□□ -1.4
SYNE1-224ENST00000478916 PRR3P79522 188 aaKnown RBP6.33□□□□□ -1.4
SYNE1-224ENST00000478916 URB1-AS1Q96HZ7 61 aa6.33□□□□□ -1.4
SYNE1-224ENST00000478916 ZNF580Q9UK33 172 aa6.33□□□□□ -1.4
SYNE1-224ENST00000478916 ADAMTSL4-AS1Q5T5F5 129 aa6.33□□□□□ -1.4
SYNE1-224ENST00000478916 C8orf87E5RJ46 101 aa6.33□□□□□ -1.4
SYNE1-224ENST00000478916 C9orf116Q5BN46 136 aaPredicted RBP6.33□□□□□ -1.4
SYNE1-224ENST00000478916 ODF3L2Q3SX64 289 aa6.32□□□□□ -1.4
SYNE1-224ENST00000478916 NCOR2Q9Y618 2525 aa6.32□□□□□ -1.4
SYNE1-224ENST00000478916 BCE1O60756 84 aa6.32□□□□□ -1.4
SYNE1-224ENST00000478916 A0A087WSZ3 146 aa6.32□□□□□ -1.4
SYNE1-224ENST00000478916 SBSPONQ8IVN8 264 aa6.32□□□□□ -1.4
SYNE1-224ENST00000478916 PTPRSQ13332 1948 aa6.31□□□□□ -1.4
SYNE1-224ENST00000478916 BRI3O95415 125 aa6.31□□□□□ -1.4
SYNE1-224ENST00000478916 ACYP2P14621 99 aa6.31□□□□□ -1.4
SYNE1-224ENST00000478916 SPINT4Q6UDR6 99 aa6.31□□□□□ -1.4
SYNE1-224ENST00000478916 DEFB116Q30KQ4 102 aa6.31□□□□□ -1.4
SYNE1-224ENST00000478916 F8WDY8 70 aa6.3□□□□□ -1.4
SYNE1-224ENST00000478916 C7orf65Q6ZTY9 151 aa6.3□□□□□ -1.4
SYNE1-224ENST00000478916 Q9UF83 564 aa6.3□□□□□ -1.4
SYNE1-224ENST00000478916 AMELXQ99217 191 aa6.3□□□□□ -1.4
SYNE1-224ENST00000478916 CCDC168Q8NDH2 2452 aa6.3□□□□□ -1.4
SYNE1-224ENST00000478916 IGLV5-52A0A0A0MRZ9 124 aa6.3□□□□□ -1.4
SYNE1-224ENST00000478916 PRM2P04554 102 aa6.3□□□□□ -1.4
SYNE1-224ENST00000478916 IGF2RP11717 2491 aa6.3□□□□□ -1.4
SYNE1-224ENST00000478916 Q6ZTC4 211 aa6.29□□□□□ -1.4
SYNE1-224ENST00000478916 NHLRC4P0CG21 123 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-224ENST00000478916 C6orf223Q8N319 242 aa6.29□□□□□ -1.4
SYNE1-224ENST00000478916 SMIM29Q86T20 159 aa6.29□□□□□ -1.4
SYNE1-224ENST00000478916 PRLHP81277 87 aa6.29□□□□□ -1.4
SYNE1-224ENST00000478916 TP53AIP1Q9HCN2 124 aa6.28□□□□□ -1.4
SYNE1-224ENST00000478916 A0A1W2PPR1 153 aa6.27□□□□□ -1.41
SYNE1-224ENST00000478916 FSHBP01225 129 aa6.26□□□□□ -1.41
SYNE1-224ENST00000478916 ATP11AUNQ6ZP68 121 aa6.26□□□□□ -1.41
SYNE1-224ENST00000478916 LINC01561Q8N1V8 128 aa6.26□□□□□ -1.41
SYNE1-224ENST00000478916 IGLV4-60A0A075B6I1 120 aa6.26□□□□□ -1.41
SYNE1-224ENST00000478916 EDN2P20800 178 aa6.26□□□□□ -1.41
SYNE1-224ENST00000478916 C1orf134Q5TEV5 83 aa6.26□□□□□ -1.41
SYNE1-224ENST00000478916 RAI1Q7Z5J4 1906 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-224ENST00000478916 IGKV2D-30A0A075B6S6 120 aa6.25□□□□□ -1.41
SYNE1-224ENST00000478916 IGKV2-30P06310 120 aa6.25□□□□□ -1.41
SYNE1-224ENST00000478916 MYO18BQ8IUG5 2567 aa6.25□□□□□ -1.41
SYNE1-224ENST00000478916 H3BPC8 53 aa6.24□□□□□ -1.41
SYNE1-224ENST00000478916 PLA2G1BP04054 148 aaKnown RBP6.24□□□□□ -1.41
SYNE1-224ENST00000478916 LINC01556Q5JQF7 62 aa6.24□□□□□ -1.41
SYNE1-224ENST00000478916 FHL2Q14192 279 aa6.24□□□□□ -1.41
SYNE1-224ENST00000478916 C6orf48Q9UBA6 75 aa6.24□□□□□ -1.41
SYNE1-224ENST00000478916 C2orf48Q96LS8 159 aa6.24□□□□□ -1.41
SYNE1-224ENST00000478916 TET2Q6N021 2002 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-224ENST00000478916 A0A096LNJ9 63 aa6.23□□□□□ -1.41
SYNE1-224ENST00000478916 SPATA3Q8NHX4 192 aa6.23□□□□□ -1.41
SYNE1-224ENST00000478916 ADAMTS20P59510 1910 aa6.23□□□□□ -1.41
SYNE1-224ENST00000478916 A8MTW9 85 aa6.22□□□□□ -1.41
SYNE1-224ENST00000478916 LINC00337Q8N6G1 96 aa6.22□□□□□ -1.41
SYNE1-224ENST00000478916 A0A1B0GUV1 79 aa6.22□□□□□ -1.41
SYNE1-224ENST00000478916 COX8CQ7Z4L0 72 aa6.22□□□□□ -1.41
SYNE1-224ENST00000478916 ABCA2Q9BZC7 2435 aa6.22□□□□□ -1.41
SYNE1-224ENST00000478916 A0A1B0GW54 56 aa6.21□□□□□ -1.42
SYNE1-224ENST00000478916 KIAA0087Q14695 138 aa6.21□□□□□ -1.42
SYNE1-224ENST00000478916 PIEZO2Q9H5I5 2752 aa6.2□□□□□ -1.42
SYNE1-224ENST00000478916 Q8N2B8 174 aa6.2□□□□□ -1.42
SYNE1-224ENST00000478916 FHL3Q13643 280 aa6.2□□□□□ -1.42
SYNE1-224ENST00000478916 CPAMD8Q8IZJ3 1885 aa6.19□□□□□ -1.42
SYNE1-224ENST00000478916 LYPD5Q6UWN5 251 aa6.19□□□□□ -1.42
SYNE1-224ENST00000478916 SMCR5Q8TEV8 140 aa6.19□□□□□ -1.42
SYNE1-224ENST00000478916 SMCPP49901 116 aaPredicted RBP6.18□□□□□ -1.42
SYNE1-224ENST00000478916 CYP4F30PQ9H0H9 118 aa6.18□□□□□ -1.42
SYNE1-224ENST00000478916 SSBP3-AS1Q7Z2R9 100 aa6.17□□□□□ -1.42
SYNE1-224ENST00000478916 LINC01546A6NGU7 62 aa6.16□□□□□ -1.42
SYNE1-224ENST00000478916 Q6ZRU5 148 aa6.16□□□□□ -1.42
SYNE1-224ENST00000478916 C11orf72Q8NBR9 251 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms